mRNA_Ecto-sp13_S_contig13181.2581.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13181.2581.1
Unique NamemRNA_Ecto-sp13_S_contig13181.2581.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13181.2581.1 vs. uniprot
Match: A0A6H5JT31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT31_9PHAE)

HSP 1 Score: 483 bits (1243), Expect = 1.120e-168
Identity = 239/239 (100.00%), Postives = 239/239 (100.00%), Query Frame = 1 
Query:    1 MDDRNKAVLATIEDSIDVFFAKREGGTEAWKNGVSAREVQGLVSLGASIPDPFAGFKLNPIPEADSGCFNLPEDIDKLASRCLEGAATSDGGGVGVPVVNEGKGACFWIALASGALNTRCSTGGAALALRTGAMRMALLKCEEFLSADGYLAEYRSGDLFDTKEHDMVMKLAGRVWPMNMSADVARLYYLCAIRSNCGPFKYSQQAVLPWAAEVLGLKVRVFHPAASVSLVGGKWNKKY 717
            MDDRNKAVLATIEDSIDVFFAKREGGTEAWKNGVSAREVQGLVSLGASIPDPFAGFKLNPIPEADSGCFNLPEDIDKLASRCLEGAATSDGGGVGVPVVNEGKGACFWIALASGALNTRCSTGGAALALRTGAMRMALLKCEEFLSADGYLAEYRSGDLFDTKEHDMVMKLAGRVWPMNMSADVARLYYLCAIRSNCGPFKYSQQAVLPWAAEVLGLKVRVFHPAASVSLVGGKWNKKY
Sbjct:    1 MDDRNKAVLATIEDSIDVFFAKREGGTEAWKNGVSAREVQGLVSLGASIPDPFAGFKLNPIPEADSGCFNLPEDIDKLASRCLEGAATSDGGGVGVPVVNEGKGACFWIALASGALNTRCSTGGAALALRTGAMRMALLKCEEFLSADGYLAEYRSGDLFDTKEHDMVMKLAGRVWPMNMSADVARLYYLCAIRSNCGPFKYSQQAVLPWAAEVLGLKVRVFHPAASVSLVGGKWNKKY 239
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13181.2581.1 vs. uniprot
Match: D7G0G8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0G8_ECTSI)

HSP 1 Score: 359 bits (922), Expect = 8.760e-124
Identity = 177/232 (76.29%), Postives = 199/232 (85.78%), Query Frame = 1 
Query:   22 VLATIEDSIDVFFAKREGGTEAWKNGVSAREVQGLVSLGASIPDPFAGFKLNPIPEADSGCFNLPEDIDKLASRCLEGAATSDGGGVGVPVVNEGKGACFWIALASGALNTRCSTGGAALALRTGAMRMALLKCEEFLSADGYLAEYRSGDLFDTKEHDMVMKLAGRVWPMNMSADVARLYYLCAIRSNCGPFKYSQQAVLPWAAEVLGLKVRVFHPAASVSLVGGKWNKKY 717
            +LA I+D+ID  FAKR G   AW+ GV+  EV+ LVS+ A + DPFAGFK+NPI + D+GCFNLPED D+LASRCLEGAATSDGG VG+PV N+G GAC WIALASGAL+ RCSTGGAALALRT AMRMALLK  EFLS DGYLAEYRS DLFD KEHDMV+KLAGR W  N+S DVAR+YYLCA+R+NCGPFKYSQQAV+PWAAEVLGLKVRVFHPAASVS VGGKWNK+Y
Sbjct:    1 MLARIKDAIDDLFAKRSG-ERAWEKGVTEAEVRHLVSMAAGLLDPFAGFKINPIRQGDTGCFNLPEDTDELASRCLEGAATSDGGQVGIPVANDGLGACVWIALASGALSERCSTGGAALALRTAAMRMALLKSPEFLSRDGYLAEYRSPDLFDLKEHDMVLKLAGREWTENISPDVARMYYLCAVRNNCGPFKYSQQAVIPWAAEVLGLKVRVFHPAASVSPVGGKWNKRY 231
[Close]
BLAST of mRNA_Ecto-sp13_S_contig13181.2581.1 vs. uniprot
Match: D7FV00_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV00_ECTSI)

HSP 1 Score: 229 bits (585), Expect = 1.900e-73
Identity = 118/167 (70.66%), Postives = 132/167 (79.04%), Query Frame = 1 
Query:   22 VLATIEDSIDVFFAKREGGTEAWKNGVSAREVQGLVSLGASIPDPFAGFKLNPIPEADSGCFNLPEDIDKLASRCLEGAATSDGGGVGVPVVNEGKGACFWIALASGALNTRCSTGGAALALRTGAMRMALLKCEEFLSADGYLAEYRSGDLFDTKEHDMVMKLAGR 522
            + A I D+I   FA+R G   AW  GV+  +V+ LVS  AS+P PFAGFK+NPI + D+GCFNLPED D+LASRCLEGAATSDGG VGVPV N+  GAC WIALASG LN RCSTGG ALALRT AMRMALLK  EFLS DGYLAEYRS +LFD KEHDMV+KLAGR
Sbjct:    3 MFARIRDAIGDLFARRSG-ERAWGKGVNEAKVRHLVSTAASLPGPFAGFKINPIRQGDTGCFNLPEDTDELASRCLEGAATSDGGRVGVPVANDWSGACVWIALASGELNERCSTGGGALALRTAAMRMALLKSPEFLSRDGYLAEYRSPNLFDLKEHDMVLKLAGR 168
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13181.2581.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JT31_9PHAE1.120e-168100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0G8_ECTSI8.760e-12476.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FV00_ECTSI1.900e-7370.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13181contigEcto-sp13_S_contig13181:2485..3628 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size717
Hectar predicted targeting categoryother localisation
Exons3
Cds size717
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462705.7426991-CDS-Ecto-sp13_S_contig13181:2484..25281681462705.7426991-CDS-Ecto-sp13_S_contig13181:2484..2528Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13181 2485..2528 -
1681462705.7518187-CDS-Ecto-sp13_S_contig13181:2679..31631681462705.7518187-CDS-Ecto-sp13_S_contig13181:2679..3163Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13181 2680..3163 -
1681462705.7604237-CDS-Ecto-sp13_S_contig13181:3439..36281681462705.7604237-CDS-Ecto-sp13_S_contig13181:3439..3628Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13181 3440..3628 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13181.2581.1prot_Ecto-sp13_S_contig13181.2581.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13181 2485..3628 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13181.2581.1

>prot_Ecto-sp13_S_contig13181.2581.1 ID=prot_Ecto-sp13_S_contig13181.2581.1|Name=mRNA_Ecto-sp13_S_contig13181.2581.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=239bp
MDDRNKAVLATIEDSIDVFFAKREGGTEAWKNGVSAREVQGLVSLGASIP
DPFAGFKLNPIPEADSGCFNLPEDIDKLASRCLEGAATSDGGGVGVPVVN
EGKGACFWIALASGALNTRCSTGGAALALRTGAMRMALLKCEEFLSADGY
LAEYRSGDLFDTKEHDMVMKLAGRVWPMNMSADVARLYYLCAIRSNCGPF
KYSQQAVLPWAAEVLGLKVRVFHPAASVSLVGGKWNKKY
back to top

mRNA from alignment at Ecto-sp13_S_contig13181:2485..3628-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13181.2581.1 ID=mRNA_Ecto-sp13_S_contig13181.2581.1|Name=mRNA_Ecto-sp13_S_contig13181.2581.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1144bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13181:2485..3628- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACGATCGAAACAAGGCGGTCTTGGCCACCATCGAAGACTCTATCGA
TGTTTTTTTCGCGAAGAGAGAGGGAGGTACGGAGGCGTGGAAGAATGGCG
TCTCTGCCCGAGAGGTTCAAGGTCTGGTTTCCTTGGGCGCCAGTATTCCC
GACCCCTTCGCCGGTTTCAAGCTGAATCCCATCCCGGAGGTGAGCACTAT
TTAGTCACCACGGCGCCATACTTATTCGAAATGGAACTGGAACCACGGAC
TTGGTCGGCACGAAAAACTTACACAAGCCTTTCGAAGCAACATGTCACAA
TGCTAATAAACCCTAGAGCAGCAGTGTGCGGCGGTTGGAAAAAGGTATTG
TCGTTTCTGTGGCAACAAGTCCGGTGTGTAGGTTGGGTGCACAGGATGCG
ACCTTAGCCATATCAGGATCCGTATGTTTTTTCTTCCCGTCGAAATCAAA
TCGGAAATACTTCAGGCAGATTCGGGGTGTTTCAACCTGCCTGAGGACAT
CGACAAGCTTGCCAGTCGCTGTTTGGAAGGGGCAGCGACATCTGATGGTG
GGGGGGTGGGTGTTCCCGTCGTAAACGAGGGGAAAGGCGCGTGTTTCTGG
ATCGCCCTTGCATCTGGGGCGCTCAACACCCGTTGTTCCACCGGGGGTGC
TGCGCTTGCTCTCCGGACCGGAGCCATGCGTATGGCACTGCTGAAGTGCG
AAGAGTTCCTGAGCGCTGACGGGTACCTGGCCGAGTACCGTTCTGGTGAC
CTCTTCGACACCAAGGAACACGACATGGTGATGAAGCTTGCAGGTCGTGT
GTGGCCGATGAACATGTCGGCGGACGTTGCCCGCCTGTACTATCTCTGTG
CTATCCGGAGTAACTGCGGGCCTTTCAAGTATAGTCAGCAGGCGGTCCTA
CCCTGGGCAGCGGAGGTGCTGGGCTTGAAAGTTCGAGTTTTTCACCCAGG
TGGGTGTTTGTGGGTTATTGAAGTGCGGAGTCATTTTCAGGGTAGTCCGG
TTGTCAGCGTACTCTTGGCGAGACTTTATGAAAACAGCCGTCGGTGAGCA
TATCTAACACCTAAATATTCTCGTGTGCACGCGTGATTGTCGTGCCGCAG
CCGCTTCAGTTTCTTTGGTGGGAGGGAAATGGAACAAGAAGTAT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13181:2485..3628-

>mRNA_Ecto-sp13_S_contig13181.2581.1 ID=mRNA_Ecto-sp13_S_contig13181.2581.1|Name=mRNA_Ecto-sp13_S_contig13181.2581.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=717bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13181:2485..3628- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACGATCGAAACAAGGCGGTCTTGGCCACCATCGAAGACTCTATCGA
TGTTTTTTTCGCGAAGAGAGAGGGAGGTACGGAGGCGTGGAAGAATGGCG
TCTCTGCCCGAGAGGTTCAAGGTCTGGTTTCCTTGGGCGCCAGTATTCCC
GACCCCTTCGCCGGTTTCAAGCTGAATCCCATCCCGGAGGCAGATTCGGG
GTGTTTCAACCTGCCTGAGGACATCGACAAGCTTGCCAGTCGCTGTTTGG
AAGGGGCAGCGACATCTGATGGTGGGGGGGTGGGTGTTCCCGTCGTAAAC
GAGGGGAAAGGCGCGTGTTTCTGGATCGCCCTTGCATCTGGGGCGCTCAA
CACCCGTTGTTCCACCGGGGGTGCTGCGCTTGCTCTCCGGACCGGAGCCA
TGCGTATGGCACTGCTGAAGTGCGAAGAGTTCCTGAGCGCTGACGGGTAC
CTGGCCGAGTACCGTTCTGGTGACCTCTTCGACACCAAGGAACACGACAT
GGTGATGAAGCTTGCAGGTCGTGTGTGGCCGATGAACATGTCGGCGGACG
TTGCCCGCCTGTACTATCTCTGTGCTATCCGGAGTAACTGCGGGCCTTTC
AAGTATAGTCAGCAGGCGGTCCTACCCTGGGCAGCGGAGGTGCTGGGCTT
GAAAGTTCGAGTTTTTCACCCAGCCGCTTCAGTTTCTTTGGTGGGAGGGA
AATGGAACAAGAAGTAT
back to top