mRNA_Ecto-sp13_S_contig13147.2558.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13147.2558.1
Unique NamemRNA_Ecto-sp13_S_contig13147.2558.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13147.2558.1 vs. uniprot
Match: A0A6H5JDT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDT9_9PHAE)

HSP 1 Score: 229 bits (585), Expect = 2.520e-67
Identity = 113/116 (97.41%), Postives = 114/116 (98.28%), Query Frame = 1 
Query:    1 VVARAPRAVERRLVGPLAVEGEAERLRVLTETLGQQTAAGNLKLKFELHVDHWAFGERELMCQWRVFTRNAGVCGGRRELETRGMMALRLWTSEDGEAPVVEPKTKASTWAILGSP 348
            VVA APRAVERRLVGPLAVEGEAERLRVLTETLGQQTAAGNLKLKF+LHVDHWAFGERELMCQWRVFTRNAGVCGGRRELETRGMMALRLWTSEDGEAPVVEPKTK STWAILGSP
Sbjct:   91 VVATAPRAVERRLVGPLAVEGEAERLRVLTETLGQQTAAGNLKLKFQLHVDHWAFGERELMCQWRVFTRNAGVCGGRRELETRGMMALRLWTSEDGEAPVVEPKTKTSTWAILGSP 206
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BLAST of mRNA_Ecto-sp13_S_contig13147.2558.1 vs. uniprot
Match: D7FWR6_ECTSI (Putative 2-hydroxy-6-oxo-2,4-heptadienoate hydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWR6_ECTSI)

HSP 1 Score: 216 bits (551), Expect = 1.150e-62
Identity = 107/109 (98.17%), Postives = 108/109 (99.08%), Query Frame = 1 
Query:    1 VVARAPRAVERRLVGPLAVEGEAERLRVLTETLGQQTAAGNLKLKFELHVDHWAFGERELMCQWRVFTRNAGVCGGRRELETRGMMALRLWTSEDGEAPVVEPKTKAST 327
            VVARAPRAVERRLVGPLAVEGEAERLRVLTETLGQQTAAGN+KLKFELHVDHWAFGERELMCQWRVFTRN GVCGGRRELETRGMMALRLWTSEDGEAPVVEPKTKAST
Sbjct:  971 VVARAPRAVERRLVGPLAVEGEAERLRVLTETLGQQTAAGNIKLKFELHVDHWAFGERELMCQWRVFTRNVGVCGGRRELETRGMMALRLWTSEDGEAPVVEPKTKAST 1079
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13147.2558.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JDT9_9PHAE2.520e-6797.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWR6_ECTSI1.150e-6298.17Putative 2-hydroxy-6-oxo-2,4-heptadienoate hydrola... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13147contigEcto-sp13_S_contig13147:866..2126 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size403
Hectar predicted targeting categoryother localisation
Exons2
Cds size402
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462703.8738115-CDS-Ecto-sp13_S_contig13147:866..11211681462703.8738115-CDS-Ecto-sp13_S_contig13147:866..1121Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13147 867..1121 -
1681462703.8867214-CDS-Ecto-sp13_S_contig13147:1979..21261681462703.8867214-CDS-Ecto-sp13_S_contig13147:1979..2126Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13147 1980..2126 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13147.2558.1prot_Ecto-sp13_S_contig13147.2558.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13147 867..2126 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13147.2558.1

>prot_Ecto-sp13_S_contig13147.2558.1 ID=prot_Ecto-sp13_S_contig13147.2558.1|Name=mRNA_Ecto-sp13_S_contig13147.2558.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=134bp
VVARAPRAVERRLVGPLAVEGEAERLRVLTETLGQQTAAGNLKLKFELHV
DHWAFGERELMCQWRVFTRNAGVCGGRRELETRGMMALRLWTSEDGEAPV
VEPKTKASTWAILGSPPPPPPPPPQEKAQATAAH
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mRNA from alignment at Ecto-sp13_S_contig13147:866..2126-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13147.2558.1 ID=mRNA_Ecto-sp13_S_contig13147.2558.1|Name=mRNA_Ecto-sp13_S_contig13147.2558.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1261bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13147:866..2126- (Ectocarpus species13 EcNAP12_S_4_19m)
GTCGTTGCAAGAGCTCCCCGAGCGGTAGAGCGGCGGCTGGTGGGCCCCCT
GGCCGTGGAGGGGGAGGCGGAGCGGCTGAGGGTCCTGACGGAAACCCTGG
GTCAGCAGACCGCCGCCGGCAACCTCAAGCTCAAGTTCGAACTCCACGTG
AGATGACACGAGAGAAGAATTTTCACGGCCGCGTTTTTTCATTTTTTTAT
GAGATGAGAAGAGATGAGAGGGCATTTTAGCGGACAGCTTTTTTTCATGA
GATAGGATCAGATGCACTTTTAACCGTAACACGTCCGCTTTGTGTTGCTT
TTTTGGGGTGAAGGAGTGGTTTTTCATCGGATGGGTCAAATGAGGCTCCA
TGTCCAGCGAAACGTAGCCGTTGAAGGCTTTCGACTATGCGCATAGATTG
TGTGAGGAGGAGCAATCCCCAACGACCTGCAGCAGGCAAGATACCCTGTG
TGTACACGGCGCCATTTGTTTATGGGCCTAGCGTAAGAGGAAGGGTTCCT
TACCACTTTGACTGCAGGATCTGCTGTTGTTGTTGTTGTTGTTGCTGTTG
TTGTTCAAACCTCAGGTTCTCGCGCAAACGTGCTGCACAGATGTCGTTGT
ATGTGATGGAATTTATCCTGCTTTCAGCCCATGGCAGAGCTCCGCCATTT
TTCCGCGAGCCTCTTGTGTCTAGAGCCCTGGCCAACCGTATACGACACAA
GATAACACACACCCTGGACTGATTTTCGGAGCTCGATTTCTCAACAGCAG
AAAGAGTCAAAAGCGCCGATCACGGCCGCGTTGAAGCCGTTCCGTCGAGA
TCTTTCCGAAAATGTATCGTTTCACATATGTATCCTCTTGGTCGTGACGC
AATCGAGCTTTGGAAATCGGTCCAGCGGGTGTGTTATCTTCCGTCGAGTA
CGGTACCCTCGCTCTGGACGGGTCCAACAAAGTTGTCAATGATTCTCAAC
ACTAGATCATCTAAACCCAAGACCTTGGCTCAACCCTTTCCCTCGCGACG
CCCAGGTGGACCACTGGGCCTTCGGCGAGCGGGAGCTCATGTGCCAGTGG
CGTGTCTTCACGCGCAACGCCGGCGTCTGCGGCGGCCGGCGGGAGCTAGA
GACCCGCGGGATGATGGCCCTGCGTCTGTGGACGAGCGAGGACGGGGAAG
CGCCGGTGGTGGAGCCGAAAACAAAGGCCTCCACGTGGGCCATCCTGGGC
TCGCCGCCGCCGCCACCGCCGCCCCCGCCGCAGGAGAAGGCTCAAGCGAC
GGCTGCCCACA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13147:866..2126-

>mRNA_Ecto-sp13_S_contig13147.2558.1 ID=mRNA_Ecto-sp13_S_contig13147.2558.1|Name=mRNA_Ecto-sp13_S_contig13147.2558.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=402bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13147:866..2126- (Ectocarpus species13 EcNAP12_S_4_19m)
GTCGTTGCAAGAGCTCCCCGAGCGGTAGAGCGGCGGCTGGTGGGCCCCCT
GGCCGTGGAGGGGGAGGCGGAGCGGCTGAGGGTCCTGACGGAAACCCTGG
GTCAGCAGACCGCCGCCGGCAACCTCAAGCTCAAGTTCGAACTCCACGTG
GACCACTGGGCCTTCGGCGAGCGGGAGCTCATGTGCCAGTGGCGTGTCTT
CACGCGCAACGCCGGCGTCTGCGGCGGCCGGCGGGAGCTAGAGACCCGCG
GGATGATGGCCCTGCGTCTGTGGACGAGCGAGGACGGGGAAGCGCCGGTG
GTGGAGCCGAAAACAAAGGCCTCCACGTGGGCCATCCTGGGCTCGCCGCC
GCCGCCACCGCCGCCCCCGCCGCAGGAGAAGGCTCAAGCGACGGCTGCCC
AC
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