mRNA_Ecto-sp13_S_contig13078.2517.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13078.2517.1
Unique NamemRNA_Ecto-sp13_S_contig13078.2517.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13078.2517.1 vs. uniprot
Match: D7FW05_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW05_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 1.510e-14
Identity = 35/44 (79.55%), Postives = 37/44 (84.09%), Query Frame = 2 
Query:   92 WGLWCLQMKVPAATTTHHDDRARQR-IAGAWSAPATWSASAANM 220
            WG WCLQ+K PAA TT HDDRARQR IAGAWSAPA  SASAA+M
Sbjct:    3 WGAWCLQVKAPAAATTEHDDRARQRRIAGAWSAPAGSSASAASM 46
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13078.2517.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FW05_ECTSI1.510e-1479.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13078contigEcto-sp13_S_contig13078:3615..4141 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size232
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_002870.1
Cds size210
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462700.5539217-CDS-Ecto-sp13_S_contig13078:3614..37111681462700.5539217-CDS-Ecto-sp13_S_contig13078:3614..3711Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13078 3615..3711 -
1681462700.5629196-CDS-Ecto-sp13_S_contig13078:4006..41191681462700.5629196-CDS-Ecto-sp13_S_contig13078:4006..4119Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13078 4007..4119 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462700.5710843-UTR-Ecto-sp13_S_contig13078:4119..41411681462700.5710843-UTR-Ecto-sp13_S_contig13078:4119..4141Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13078 4120..4141 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13078.2517.1prot_Ecto-sp13_S_contig13078.2517.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13078 3615..4119 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13078.2517.1

>prot_Ecto-sp13_S_contig13078.2517.1 ID=prot_Ecto-sp13_S_contig13078.2517.1|Name=mRNA_Ecto-sp13_S_contig13078.2517.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=70bp
MLLSTTAYHANTLNNYLSRCGLHWGLWCLQMKVPAATTTHHDDRARQRIA
GAWSAPATWSASAANMMSC*
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mRNA from alignment at Ecto-sp13_S_contig13078:3615..4141-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13078.2517.1 ID=mRNA_Ecto-sp13_S_contig13078.2517.1|Name=mRNA_Ecto-sp13_S_contig13078.2517.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=527bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13078:3615..4141- (Ectocarpus species13 EcNAP12_S_4_19m)
TCAAGACCTTGGAGAGGTCGCCATGCTGCTCTCCACAACAGCCTATCATG
CTAACACCCTAAACAACTACCTGAGTCGATGTGGGTTGCACTGGGGGCTC
TGGTGTCTCCAAATGAAGGTGCCAGCAGCAACAACGTGAGTAGATTGTTG
AAATCGATCAGTACATGCGACCCAAAATCACGAAAGCCAGCGAAGAGTGC
CAGCGAGCACCCCACAGGATTGCAGGATCGCTAGAGAGAGGCACGGGTCC
AGCAGAGAGGAGATAGTCCACACAGACTGACGTCAATGTGCTTGTCACAC
AGAATCCACGCAACCACCTTGCTCAGGTATGCTGACAAGCAGCTTGTGCA
CCCTGTTCCCCTGCCGTTCGCCTCCATGCTCGCCCGTGCACGTGATCTCC
GAAGAGATTTTTGCCAATTTTTGAAATCAGGACCCATCACGATGACCGAG
CACGACAGCGGATAGCAGGAGCTTGGAGCGCTCCAGCAACTTGGAGTGCC
TCAGCAGCGAACATGATGAGCTGCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13078:3615..4141-

>mRNA_Ecto-sp13_S_contig13078.2517.1 ID=mRNA_Ecto-sp13_S_contig13078.2517.1|Name=mRNA_Ecto-sp13_S_contig13078.2517.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=210bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13078:3615..4141- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGCTCTCCACAACAGCCTATCATGCTAACACCCTAAACAACTACCT
GAGTCGATGTGGGTTGCACTGGGGGCTCTGGTGTCTCCAAATGAAGGTGC
CAGCAGCAACAACGACCCATCACGATGACCGAGCACGACAGCGGATAGCA
GGAGCTTGGAGCGCTCCAGCAACTTGGAGTGCCTCAGCAGCGAACATGAT
GAGCTGCTGA
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