mRNA_Ecto-sp13_S_contig12989.2453.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig12989.2453.1 vs. uniprot
Match: D7G4X3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4X3_ECTSI) HSP 1 Score: 192 bits (489), Expect = 2.660e-54 Identity = 113/135 (83.70%), Postives = 116/135 (85.93%), Query Frame = 1
Query: 1 MEDGEGAALIGNSFIDVLGLVTSKTAAMDFDAGALSVSVPEGAINPTSVQGTRRRMATSSSSPAGRRINGRILQRRRMDSIAIASAKIMIASLQFSANGRPSSQVDAGVSSITITTSSEGQDIALSAPIRMTMRA 405
+EDGE AALIGNSFIDVLGLVTSKTAAMDFDAG+LSVSVPEGAINPTSVQ AGR INGRILQRRRMDSIA ASA I IASLQFSANGRPSSQVDAGVSSITITTSS GQDIALSAP+RMTMRA
Sbjct: 1127 LEDGEDAALIGNSFIDVLGLVTSKTAAMDFDAGSLSVSVPEGAINPTSVQRXXXXXXXXXXXXAGRIINGRILQRRRMDSIATASATITIASLQFSANGRPSSQVDAGVSSITITTSSGGQDIALSAPVRMTMRA 1261
BLAST of mRNA_Ecto-sp13_S_contig12989.2453.1 vs. uniprot
Match: A0A6H5JM67_9PHAE (GPS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM67_9PHAE) HSP 1 Score: 79.7 bits (195), Expect = 9.930e-15 Identity = 54/144 (37.50%), Postives = 85/144 (59.03%), Query Frame = 1
Query: 1 MEDGEGAALIGNSFIDVLGLVTSKTAAMDFDAGALSVSVPEGAINPTSVQGTRRRMATSSSSPAGRRING--RILQR------RRMDSIAIASAKIMIASLQ-FSANGRPSSQVDAGVSSITITTSSEGQDIALSAPIRMTMRA 405
MEDGEG I + ++ LVTS T ++ F G SVS +G I S TRRRM + + G R +R RR++S+++ S ++ + Q F+AN RPS+ V+ GV+ I ++++S+G+DIAL+ P+++TMRA
Sbjct: 369 MEDGEGVMTIESEYVQASCLVTSSTGSLSFATGTSSVSFEDGVIASPSSPSTRRRMTPEIDGGSKCKSGGCARSTRRMPKSSSRRLNSVSLTSTSTVVVTNQLFNANDRPSALVNGGVTQIKVSSTSDGEDIALAGPVQLTMRA 512
BLAST of mRNA_Ecto-sp13_S_contig12989.2453.1 vs. uniprot
Match: D7G398_ECTSI (GPS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G398_ECTSI) HSP 1 Score: 79.7 bits (195), Expect = 1.050e-14 Identity = 56/144 (38.89%), Postives = 86/144 (59.72%), Query Frame = 1
Query: 1 MEDGEGAALIGNSFIDVLGLVTSKTAAMDFDAGALSVSVPEGAINPTSVQGTRRRMATSSSS----PAGR--RINGRILQR--RRMDSIAIASAKIMIASLQ-FSANGRPSSQVDAGVSSITITTSSEGQDIALSAPIRMTMRA 405
MEDGEG I + ++ LVTS T ++ FD G SVS +G I S TRRRM +GR R R+ + RR++S++ S ++ + Q F+AN RPS+ V+ GV+ I ++++S+G+DIAL+ P+++TMRA
Sbjct: 1054 MEDGEGVMTIESEYVQASCLVTSSTGSLSFDTGTSSVSFEDGVIASPSSPSTRRRMTPEIDGGLKCKSGRCARSTRRMPKSSSRRLNSVSSTSTSTVVVTNQLFNANDRPSALVNGGVTQIKVSSTSDGEDIALAGPVQLTMRA 1197
BLAST of mRNA_Ecto-sp13_S_contig12989.2453.1 vs. uniprot
Match: D7G3A0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3A0_ECTSI) HSP 1 Score: 78.6 bits (192), Expect = 2.620e-14 Identity = 54/145 (37.24%), Postives = 85/145 (58.62%), Query Frame = 1
Query: 1 MEDGEGAALIGNSFIDVLGLVTSKTAAMDFDAGALSVSVPEGAINPTSVQGTRRRMATSSSSPAGRRINGRILQR---------RRMDSIAIASAKIMIASLQ-FSANGRPSSQVDAGVSSITITTSSEGQDIALSAPIRMTMRA 405
MEDGEG I + ++ LVTS T ++ FD G SVS +G + S TRRRM T + +GR + RR++S++ S ++ + Q F+AN RPS+ V+ GV+ I ++++S+G+DIAL+ P+++TMRA
Sbjct: 601 MEDGEGVMTIESEYVQASCLVTSSTGSLSFDTGTSSVSFEDGVLASPSSPSTRRRM-THEIDGGLKCKSGRCARSTRHMPKSSSRRLNSVSSTSTSTVVVTNQLFNANDRPSALVNGGVTQIKVSSTSDGEDIALAGPVQLTMRA 744
BLAST of mRNA_Ecto-sp13_S_contig12989.2453.1 vs. uniprot
Match: D7FLQ3_ECTSI (GPS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLQ3_ECTSI) HSP 1 Score: 74.7 bits (182), Expect = 4.030e-13 Identity = 51/144 (35.42%), Postives = 80/144 (55.56%), Query Frame = 1
Query: 1 MEDGEGAALIGNSFIDVLGLVTSKTAAMDFDAGALSVSVPEGAINPTSVQGTRRRMATSSSSPAGRRING--------RILQRRRMDSIAIASAKIMIASLQ-FSANGRPSSQVDAGVSSITITTSSEGQDIALSAPIRMTMRA 405
MEDGE I + + L+TS+T ++ FDAG SVS G I S TRRRM + + G R RR+ +++ AS ++ + Q F+A RPS+ V+ GV+ I ++++ +G+DIAL+ P+++TMRA
Sbjct: 24 MEDGEDVMTIESDHVQASCLITSRTGSLSFDAGTSSVSFENGVIGSPSPPSTRRRMTPEMDEGSKCKAGGCGSSTNRRRRPSSRRLSTVSPASTSTVLVTNQLFNAVSRPSALVNGGVTQIRVSSTDDGEDIALAGPVQLTMRA 167
BLAST of mRNA_Ecto-sp13_S_contig12989.2453.1 vs. uniprot
Match: D7G3A1_ECTSI (GPS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3A1_ECTSI) HSP 1 Score: 74.3 bits (181), Expect = 7.840e-13 Identity = 50/144 (34.72%), Postives = 80/144 (55.56%), Query Frame = 1
Query: 1 MEDGEGAALIGNSFIDVLGLVTSKTAAMDFDAGALSVSVPEGAINPTSVQGTRRRMATSSSSPAGRRING--------RILQRRRMDSIAIASAKIMIASLQ-FSANGRPSSQVDAGVSSITITTSSEGQDIALSAPIRMTMRA 405
MEDGE I + + L+TS+T ++ FDAG SVS G I S TRRRM + + G R RR+ +++ AS ++ + Q F+A RPS+ V+ G++ I ++++ +G+DIAL+ P+++TMRA
Sbjct: 646 MEDGEDVMTIESDHVQASCLITSRTGSLSFDAGTSSVSFENGVIGSPSPPSTRRRMTPEMDEGSKCKAGGCGSSTNRRRRPSSRRLSTVSPASTSTVLVTNQLFNAVSRPSALVNGGITQIRVSSTDDGEDIALAGPVQLTMRA 789
BLAST of mRNA_Ecto-sp13_S_contig12989.2453.1 vs. uniprot
Match: A0A6H5JLT2_9PHAE (GPS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLT2_9PHAE) HSP 1 Score: 62.4 bits (150), Expect = 1.150e-8 Identity = 32/41 (78.05%), Postives = 37/41 (90.24%), Query Frame = 1
Query: 1 MEDGEGAALIGNSFIDVLGLVTSKTAAMDFDAGA-LSVSVP 120
+EDGE AALIGNSFIDVLGLVTSKT+AMDFDAG +++S P
Sbjct: 242 LEDGEDAALIGNSFIDVLGLVTSKTSAMDFDAGEDITLSAP 282
BLAST of mRNA_Ecto-sp13_S_contig12989.2453.1 vs. uniprot
Match: D7FLQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLQ0_ECTSI) HSP 1 Score: 57.8 bits (138), Expect = 2.400e-7 Identity = 30/38 (78.95%), Postives = 32/38 (84.21%), Query Frame = 1
Query: 1 MEDGEGAALIGNSFIDVLGLVTSKTAAMDFDAGALSVS 114
+EDGE AALIGNSFIDVLGLVTSKTAAMD AG +S
Sbjct: 185 LEDGEDAALIGNSFIDVLGLVTSKTAAMDLAAGYCPLS 222 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12989.2453.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig12989.2453.1 >prot_Ecto-sp13_S_contig12989.2453.1 ID=prot_Ecto-sp13_S_contig12989.2453.1|Name=mRNA_Ecto-sp13_S_contig12989.2453.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=135bp MEDGEGAALIGNSFIDVLGLVTSKTAAMDFDAGALSVSVPEGAINPTSVQback to top mRNA from alignment at Ecto-sp13_S_contig12989:3928..4863- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig12989.2453.1 ID=mRNA_Ecto-sp13_S_contig12989.2453.1|Name=mRNA_Ecto-sp13_S_contig12989.2453.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=936bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12989:3928..4863- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12989:3928..4863- >mRNA_Ecto-sp13_S_contig12989.2453.1 ID=mRNA_Ecto-sp13_S_contig12989.2453.1|Name=mRNA_Ecto-sp13_S_contig12989.2453.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=405bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12989:3928..4863- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |