mRNA_Ecto-sp13_S_contig12978.2443.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12978.2443.1
Unique NamemRNA_Ecto-sp13_S_contig12978.2443.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12978.2443.1 vs. uniprot
Match: D7FMG0_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMG0_ECTSI)

HSP 1 Score: 191 bits (484), Expect = 2.430e-56
Identity = 95/137 (69.34%), Postives = 111/137 (81.02%), Query Frame = 2 
Query:    8 QAIMSHPILDRAFEKHVQDYLCLESYDFVKEVAQYVSDTDKESVEQLFVHFRRIVDVYILAGSELEINIETAMRQKVLEIGDREAFVKAATERRRDVFNPPKAEVLKILDDNLLPSFLASQHFLDASKNWQEALAAG 418
            + IMS+PILD+AFEKHVQDYLC ESYDFVKEV +YV+  + ES  +LFVHFRRIVD YI++GSELE+NIE AMR KVLEIG+R  FV+A  ER+R +FNPPK E  KILDDNLL SFL S++FLDA   WQE  AAG
Sbjct:   40 KVIMSNPILDQAFEKHVQDYLCSESYDFVKEVERYVTHAENESAAELFVHFRRIVDKYIVSGSELELNIENAMRNKVLEIGERMIFVEAGMERQRGIFNPPKEEAHKILDDNLLQSFLTSRNFLDACLRWQEVQAAG 176
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BLAST of mRNA_Ecto-sp13_S_contig12978.2443.1 vs. uniprot
Match: A0A6H5JPT6_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPT6_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 3.820e-45
Identity = 93/147 (63.27%), Postives = 101/147 (68.71%), Query Frame = 2 
Query:   11 AIMSHPILDRAFEKHVQDYLCLESYDFVKEVAQYVSDTDKESVEQLFVHFRRIVDVYILAGSELEINIETAMRQKVLEIGD-------------------REAFVKAATERRRDVFNPPKAEVLKILDDNLLPSFLASQHFLDASKN 394
            AIMSHPILDRAFEKHVQDYLCLESYDFVK                       IVD+YILAGSE+EINIETAMR+KVLE+ +                   +EAFVKA TERRRD+FNPPKAEVLKILDDNL+ SFLASQ FLDASKN
Sbjct:   41 AIMSHPILDRAFEKHVQDYLCLESYDFVK-----------------------IVDMYILAGSEMEINIETAMRKKVLEVCNMRSHVQFLAPANAAAVRVGKEAFVKAVTERRRDIFNPPKAEVLKILDDNLVQSFLASQQFLDASKN 164
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BLAST of mRNA_Ecto-sp13_S_contig12978.2443.1 vs. uniprot
Match: A0A6H5K6J1_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6J1_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 6.110e-41
Identity = 82/161 (50.93%), Postives = 102/161 (63.35%), Query Frame = 2 
Query:    8 QAIMSHPILDRAFEKHVQDYLCLESYDFVKEVAQYVSDTDKESVEQLFVHFRRIVDVYILAGSELEINIETAMRQKVLE------------------------IGDREAFVKAATERRRDVFNPPKAEVLKILDDNLLPSFLASQHFLDASKNWQEALAAG 418
            Q IMS+P+LD+AFEKH QDYLC ESYDF++EV  YV+  ++   E  F HF  IV+VYI AGS+LEINI TAMR  VLE                        IGDR  F++A  ER+RDVFNPP+ E+ K++D+NL+ SF   Q FLDA K W+E   AG
Sbjct:   39 QVIMSNPVLDQAFEKHAQDYLCSESYDFIQEVGCYVALAEQNPAEDRFAHFTNIVNVYISAGSKLEINIGTAMRTGVLERKARDNSTLFHDMCTSPNRSWFAKIGDRVRFLEATFERQRDVFNPPRMEISKMIDENLVHSFWTRQLFLDACKKWEEQQGAG 199
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BLAST of mRNA_Ecto-sp13_S_contig12978.2443.1 vs. uniprot
Match: A0A6H5LMC0_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LMC0_9PHAE)

HSP 1 Score: 138 bits (347), Expect = 8.820e-37
Identity = 69/107 (64.49%), Postives = 84/107 (78.50%), Query Frame = 2 
Query:   98 EVAQYVSDTDKESVEQLFVHFRRIVDVYILAGSELEINIETAMRQKVLEIGDREAFVKAATERRRDVFNPPKAEVLKILDDNLLPSFLASQHFLDASKNWQEALAAG 418
            +V +YV+  +KES  +LFVHFRRIVD YI++GSELE+NIE+AMR KVLE+G+R  FV+A  ER+R +FNP K E  KILDDNLL SFL S+ FLDA   WQEA AAG
Sbjct:    3 QVERYVAHAEKESAAELFVHFRRIVDKYIVSGSELELNIESAMRNKVLEVGERVIFVEAGMERQRGIFNPSKEEAHKILDDNLLQSFLTSRKFLDACLRWQEAQAAG 109
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BLAST of mRNA_Ecto-sp13_S_contig12978.2443.1 vs. uniprot
Match: A0A6H5KZ93_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ93_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 6.700e-7
Identity = 26/32 (81.25%), Postives = 29/32 (90.62%), Query Frame = 2 
Query:    8 QAIMSHPILDRAFEKHVQDYLCLESYDFVKEV 103
            + IMS+P+LD AFEKHVQDYLC ESYDFVKEV
Sbjct:   40 KVIMSNPMLDPAFEKHVQDYLCSESYDFVKEV 71
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BLAST of mRNA_Ecto-sp13_S_contig12978.2443.1 vs. uniprot
Match: A0A836CE15_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE15_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 7.970e-7
Identity = 39/120 (32.50%), Postives = 59/120 (49.17%), Query Frame = 2 
Query:   26 PILDRAFEKHVQDYLCLESYDFVKEVAQYVSDTDKESVEQLFVHFRRIVDVYILAGSELEINIETAMRQKVLEIGDREAFVKAATERRRDVFNPPKAEVLKILDDNLLPSFLASQHFLDA 385
            P L+ AF  HV+  LC ESY F+ E   Y S   ++  EQ +  F ++V   I   S  EI          ++  D   F+    E RR +F    AEV ++LD NL+ SF+ ++ ++ A
Sbjct:  292 PALNVAFAAHVERCLCYESYKFLAESMAYTSSAFEDPEEQ-YAAFEKVVATCIAVNSTFEI----------MKYRDETIFILLEPEARRTIFKEAAAEVARMLDQNLIASFVGTKQYIAA 400
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12978.2443.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FMG0_ECTSI2.430e-5669.34RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JPT6_9PHAE3.820e-4563.27RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K6J1_9PHAE6.110e-4150.93RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5LMC0_9PHAE8.820e-3764.49RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KZ93_9PHAE6.700e-781.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CE15_9STRA7.970e-732.50Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12978contigEcto-sp13_S_contig12978:1242..4244 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score61.6
Seed ortholog evalue3.4e-07
Seed eggNOG ortholog2880.D8LTR6
Model size1087
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.Regulator of G protein signaling domain
EggNOG OGs2D0MX@1,2SERP@2759
Cds size423
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12978.2443.1prot_Ecto-sp13_S_contig12978.2443.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12978 1258..3596 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462694.3441315-UTR-Ecto-sp13_S_contig12978:1241..12571681462694.3441315-UTR-Ecto-sp13_S_contig12978:1241..1257Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12978 1242..1257 +
1681462694.3849394-UTR-Ecto-sp13_S_contig12978:3596..42441681462694.3849394-UTR-Ecto-sp13_S_contig12978:3596..4244Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12978 3597..4244 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462694.3535814-CDS-Ecto-sp13_S_contig12978:1257..13411681462694.3535814-CDS-Ecto-sp13_S_contig12978:1257..1341Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12978 1258..1341 +
1681462694.361571-CDS-Ecto-sp13_S_contig12978:2078..22221681462694.361571-CDS-Ecto-sp13_S_contig12978:2078..2222Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12978 2079..2222 +
1681462694.3694477-CDS-Ecto-sp13_S_contig12978:2737..29091681462694.3694477-CDS-Ecto-sp13_S_contig12978:2737..2909Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12978 2738..2909 +
1681462694.3772202-CDS-Ecto-sp13_S_contig12978:3573..35961681462694.3772202-CDS-Ecto-sp13_S_contig12978:3573..3596Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12978 3574..3596 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12978.2443.1

>prot_Ecto-sp13_S_contig12978.2443.1 ID=prot_Ecto-sp13_S_contig12978.2443.1|Name=mRNA_Ecto-sp13_S_contig12978.2443.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=141bp
MSHPILDRAFEKHVQDYLCLESYDFVKEVAQYVSDTDKESVEQLFVHFRR
IVDVYILAGSELEINIETAMRQKVLEIGDREAFVKAATERRRDVFNPPKA
EVLKILDDNLLPSFLASQHFLDASKNWQEALAAGNQPHGT*
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mRNA from alignment at Ecto-sp13_S_contig12978:1242..4244+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12978.2443.1 ID=mRNA_Ecto-sp13_S_contig12978.2443.1|Name=mRNA_Ecto-sp13_S_contig12978.2443.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3003bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12978:1242..4244+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGGCTGGCAGGCAATCATGAGCCATCCGATTCTGGACCGAGCTTTCGAGA
AGCACGTCCAGGACTATCTTTGCCTAGAGTCCTATGACTTCGTCAAGGAG
GTCAGTACATGCAGACCTGAGGGTGACAATGGGCCTGTTTAGGAACGATG
TTCGAGAGTGCACGGAAGAATTCGGAACATCTCCCAGATCTACCTGTGTA
TTTGGGTTCTTGTTGTACCGCCCTGGAAGCGTATCGATGTGGGTCTCGTT
TCGATTTTCTGGGGTCCCACAAAGAGAAAGGTCTCACGGAGTTCTTATTC
TGCTCTCTTGCTGCTCCTGCAGCAACAGCCTTCATGGAAGCGTGTCCACT
GGACCCAAGGGCTACGTGATGAGGATGCACAGTGTGTAACACGCAGCACG
CTTCGGAGGGCAGCAGCTGAATAATACGTACATCGAACTTCGGTCCATAG
CCAGCAAACATGTCGTAGCTTTGCCACGTAAAGGTGTAGCATAGCATAGG
GTGTTTTCTGAATGGTAGTGCGTACCATTGGGAGACTCAGTCGTCCGAGA
CTGCTGCTGGAAAACAGTTTCGTCCCGTCTGGTAGTATCTGGAGGGGGAT
TTTGGTTTTTAGTAGCAGAGACGCGTTCGGATACCACAGAGGCTTTGCGC
CGTGCGGAACGTGTGGTACGGGGGAAGTCTCCCTCTCCAGGCCACAGTAT
ATATCAATCAAGGCAGTTCGAACGAAAAACAATAAAGTGCTGCTCCCTAA
ATATTGTGTTCTGATACATCAACTATATATAGTTGATACGGTTTCCCATA
ATTTAGACCAACCTGCCAACCGCCATTTTTATCACAGGTGGCACAATACG
TCAGCGACACAGACAAAGAATCCGTTGAACAACTTTTCGTTCACTTCCGA
AGAATCGTGGATGTGTACATCCTGGCGGGGTCGGAGCTGGAAATAAACAT
CGAAACCGCGATGCGACAAAAAGTGCTCGAGGTGTGTAACATGCGGCCAC
ACGACGTTCAGTCCTTGGCCCCAGCAAGTGTTGCCGCGGTTCGTGCGGGA
AAGTAAAACCTGCGAACAGCAAACATCGCAAAGGAGATTCGTTGAGAATG
GACGCCTATATGTAGGGGAAAAACCACTTTGAAACGTTGACCAGGTGCAC
TTGGTAACGACATATACCTACTCGGAGCCATGACGGCAAAGATTGGGAAG
GCGTGGTTTCATATGGTTGTACCCCCACCAAGAAGAGAAATAATACATTG
AGCACAAGAAAAGGCTTTGGTTTTGAGAGCAGCATACGAAACGGCGACGA
TTCGTCTGCAGACCCTTGGCGAAATCGTCATGATGCTCAATGGCTCGTTT
GAATACTGACCGATCCATACCCGTACCCCCGTGCGCTCCCAAGTAGACGG
GGAGTAGTCGGTAATTGTCATGCGGGATTGAATGTTGGCACGGCTTTGAA
CGCCCCAGCTCTCTTTCCTTGACACGTCAACATTTGTTTCTGAAAGATTG
GGGACAGGGAAGCCTTTGTGAAGGCTGCGACGGAAAGGCGAAGAGACGTC
TTCAACCCTCCGAAGGCAGAAGTCCTCAAGATTCTTGACGACAACCTCCT
TCCGTCCTTCTTGGCAAGTCAGCACTTTCTCGACGCCTCCAAGAATTGGC
AAGAAGCGCTAGCCGCAGGTAACGATGACTCCGTCTGCATATGCTGCATG
GCCTTTCCCTTGAGTTCGCATGTGCCACTTCAACCGATCGTCAGTGTGAG
GTGCTTTGATTTCCGTTCCGCTGGCTGCTTCAGTCACTGATCAATTGTGA
ACTGTGGACGTCCGTGGACGTTTGCAACGGGTGACTTCATGACATGTACA
TGTCCGTGGACGTCCGTCGACACGTCCGTGGGTTTCATTCGGTGTTGTNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNACAAACGTACACTACCCTTCAGGAAATCAACCACACGGGA
CATAGAGGCCGGACGATGAGCACCAACGATCGAAGACCATCAAAGTCTAC
AAGCACCAGCATCACGTGAACGATCAAGCGATGGACGTCACAATTAAGTG
CACATTCGAGGACGGGGGTGTTTTCCCCGACGGAGTCTTTCCCCTCTACC
GTCTTGTCTGAGAGAAGCATGCCGGAGAAACCTTAGGTGGATTCTCTTTA
GTAGGGTTCTAAAGCGAATGACGCAGCAGCACGCGATCAACAGGCCACGG
GGGCTATGCGCGCTACGGTGGTTTCGTGTGCGGTATTCAAAGGCAACAGT
GCCCAGGGGGAAACGCCGGGCCCAAGTAAGCCTAGTTAAATGCCAGGGTT
GGCGATAGGTCTCATCCAATGAGACGTGTTTCATTACATTGTAGAGTACA
TGTGGCTTTCGCTGAACCCATCCCCGAGTCTCCCGCTCTCTTAGATTCTA
GTCGACCTAGCTCGTCTGGAAACTAGACATACATGCACTCATTTGGTACG
CATATAGACTGCTGGATCGCAAAGTTCCTCAGGACGTGCTGGTAGTTCGA
GATTTGTGGATGGTGGGCTGAGCAGTGGAGAGGTTTGGCTTGCAATCGCA
CGTAGGTATGCTGGCGCTAAAAACCGCAGTCCTTCGACGAAAGTGCACCA
AGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12978:1242..4244+

>mRNA_Ecto-sp13_S_contig12978.2443.1 ID=mRNA_Ecto-sp13_S_contig12978.2443.1|Name=mRNA_Ecto-sp13_S_contig12978.2443.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=423bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12978:1242..4244+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCCATCCGATTCTGGACCGAGCTTTCGAGAAGCACGTCCAGGACTA
TCTTTGCCTAGAGTCCTATGACTTCGTCAAGGAGGTGGCACAATACGTCA
GCGACACAGACAAAGAATCCGTTGAACAACTTTTCGTTCACTTCCGAAGA
ATCGTGGATGTGTACATCCTGGCGGGGTCGGAGCTGGAAATAAACATCGA
AACCGCGATGCGACAAAAAGTGCTCGAGATTGGGGACAGGGAAGCCTTTG
TGAAGGCTGCGACGGAAAGGCGAAGAGACGTCTTCAACCCTCCGAAGGCA
GAAGTCCTCAAGATTCTTGACGACAACCTCCTTCCGTCCTTCTTGGCAAG
TCAGCACTTTCTCGACGCCTCCAAGAATTGGCAAGAAGCGCTAGCCGCAG
GAAATCAACCACACGGGACATAG
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