mRNA_Ecto-sp13_S_contig12839.2344.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12839.2344.1
Unique NamemRNA_Ecto-sp13_S_contig12839.2344.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12839.2344.1 vs. uniprot
Match: A0A6H5KVD6_9PHAE (DUF4524 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVD6_9PHAE)

HSP 1 Score: 632 bits (1629), Expect = 2.310e-215
Identity = 362/438 (82.65%), Postives = 377/438 (86.07%), Query Frame = 3 
Query:  129 GGGWTSMSLGAIASRAIALRQQFLRCSGNAAAXXXXXXXRGAGEPQVAVKIRPPRVVVRXXXALPSPSSSS-PVEAVARNAAAPQPTAKPYNPPAKAGGARWLGSPSSRRGTAAGSPSVVELVERGGASFVAFADGRARGAFADRTIVSLGAPFFYRPLRGSRCGGSGGGSGG-RGISYCGSGGREGVATAVVRPGCSDDDKEEREE-DREIECIRADGTVLRLTRRSLDRLGSFGERSGGCNSPAGDDCGVGALRPYVVAVLRFADWAATHPADRRAAAGREAAGRAAAAAEAERNRRFVDLQLLAAKRSVAPPSLLCYHRRGPDPRKPHDGSPSGAAGSRRGGHRSGDEANASPGLRRRAVGVGGEENNDGQHKENSRPRRPGSRVHVVEGGFGVSRWGGGDGGRQRNSLVAGLLEANRKVLMGEDMSRKCARGKL 1433
            GGGWTSMSLGAI SRAIALRQQFLRCSG  AA       RGAG+ +  VKIRPPRVVV+   AL SPSSSS PVEAVA NAAAP+PT KPY PP +AGGARWLGSPSSR GTAAGSPSVVELVERGGASFVAFADGRARGAFADRTIVSLGAP FYRPLRGSRCGG        RGISY GSGG +GVATAVVRPGCSD D+EE+EE DREIECIRADGTVLRLTR SLDR GSFG RSGG NSPA  +CGVGALRPYVVAVLRFADWAATHPADRRAAAGREAAG    AAEAERNRRFVDLQLLAAKRSVAPP LLCYHR GPD R+P+DGSPSGAAGSRRGG RSGDEANASPGL RRAVGVGGEENND Q KENSRPRRP +RV V+EG  GVS+WGGGDGGRQRNSLVAGLLEANRKVLMGED+SRK    KL
Sbjct:  597 GGGWTSMSLGAITSRAIALRQQFLRCSG-IAATAAAAGIRGAGDHRDIVKIRPPRVVVQPPAALSSPSSSSSPVEAVAGNAAAPRPTTKPYAPP-EAGGARWLGSPSSRGGTAAGSPSVVELVERGGASFVAFADGRARGAFADRTIVSLGAPVFYRPLRGSRCGGXXXXXXXXRGISYYGSGGPKGVATAVVRPGCSDVDEEEKEEEDREIECIRADGTVLRLTRHSLDRRGSFGGRSGGGNSPASGNCGVGALRPYVVAVLRFADWAATHPADRRAAAGREAAGXXXXAAEAERNRRFVDLQLLAAKRSVAPPPLLCYHRGGPDQRQPYDGSPSGAAGSRRGGRRSGDEANASPGLWRRAVGVGGEENNDDQDKENSRPRRPSNRVDVLEGSSGVSKWGGGDGGRQRNSLVAGLLEANRKVLMGEDLSRKFPPEKL 1032
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12839.2344.1 vs. uniprot
Match: D8LL70_ECTSI (DUF4524 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL70_ECTSI)

HSP 1 Score: 556 bits (1434), Expect = 1.010e-187
Identity = 327/436 (75.00%), Postives = 343/436 (78.67%), Query Frame = 3 
Query:  129 GGGWTSMSLGAIASRAIALRQQFLRCSGN-AAAXXXXXXXRGAGEPQVAVKIRPPRVVVRXXXALPSPSSSS-PVEAVARNAAAPQPTAKPYNPPAKAGGARWLGSPSSRRGTAAGSPSVVELVERGGASFVAFADGRARGAFADRTIVSLGAPFFYRPLRGSRCGGSGGGSGGRGISYCGSGGREGVATAVVRPGCSDDDKEEREEDREIECIRADGTVLRLTRRSLDRLGSFGERSGGCNSPAGDDCGVGALRPYVVAVLRFADWAATHPADRRAAAGREAAGRAAAAAEAERNRRFVDLQLLAAKRSVAPPSLLCYHRRGPDPRKPHDGSPSGAAGSRRGGHRSGDEANASPGLRRRAVGVGGEENNDGQHKENSRPRRPGSRVHVVEGGFGVSRWGGGDGGRQRNSLVAGLLEANRKVLMGEDMSRKCARGK 1430
            GGGWTSMSLG IASRAIALRQQFL+CSGN AAA       RG GEPQV VKIRP  VVV+   AL SPSSSS PVEAV RNAAAP+PT KPY PP + GGARWLGS SSR   AAGSPSVVE VERGGASFVAFADGRARG FADRTIV LGAPFFYRPLRGSRCG   GG                                     RE+ECIRADGTVLRLTRRSLDR GSFG RSGG N PAG DCGVGALRPYVVAVLRFADWAATHPADRRAAAGREAA     AAEAERNRRFVDLQLLAAKRSV PP LLCYHR G DPR+P+DG+PSGAAGSRRGG RSGDEA+ASPGLRRRAVG  GEEN+DGQ+KEN+RPRRP +RV V+E G GVSRWGGGDGGRQRNSLVAGLLEANRKVLMGE MSRK A+G+
Sbjct:  440 GGGWTSMSLGNIASRAIALRQQFLQCSGNPAAAAAAAAGRRGPGEPQVTVKIRPSLVVVQPPSALSSPSSSSSPVEAVVRNAAAPRPTNKPYAPPEE-GGARWLGSSSSRGRMAAGSPSVVESVERGGASFVAFADGRARGTFADRTIVCLGAPFFYRPLRGSRCGV--GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREVECIRADGTVLRLTRRSLDRRGSFGGRSGGGNIPAGGDCGVGALRPYVVAVLRFADWAATHPADRRAAAGREAAXXXXXAAEAERNRRFVDLQLLAAKRSVPPPPLLCYHRGGLDPREPYDGTPSGAAGSRRGGRRSGDEASASPGLRRRAVGACGEENDDGQYKENNRPRRPSNRVDVLEEGSGVSRWGGGDGGRQRNSLVAGLLEANRKVLMGEHMSRKFAQGE 872
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12839.2344.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KVD6_9PHAE2.310e-21582.65DUF4524 domain-containing protein n=1 Tax=Ectocarp... [more]
D8LL70_ECTSI1.010e-18775.00DUF4524 domain-containing protein n=1 Tax=Ectocarp... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12839contigEcto-sp13_S_contig12839:3154..4811 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1477
Hectar predicted targeting categorymitochondrion
Exons2
Cds size1296
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462687.1393921-UTR-Ecto-sp13_S_contig12839:3153..31881681462687.1393921-UTR-Ecto-sp13_S_contig12839:3153..3188Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12839 3154..3188 -
1681462687.1596336-UTR-Ecto-sp13_S_contig12839:4484..45041681462687.1596336-UTR-Ecto-sp13_S_contig12839:4484..4504Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12839 4485..4504 -
1681462687.1718216-UTR-Ecto-sp13_S_contig12839:4685..48111681462687.1718216-UTR-Ecto-sp13_S_contig12839:4685..4811Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12839 4686..4811 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462687.1497085-CDS-Ecto-sp13_S_contig12839:3188..44841681462687.1497085-CDS-Ecto-sp13_S_contig12839:3188..4484Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12839 3189..4484 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12839.2344.1prot_Ecto-sp13_S_contig12839.2344.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12839 3189..4484 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12839.2344.1

>prot_Ecto-sp13_S_contig12839.2344.1 ID=prot_Ecto-sp13_S_contig12839.2344.1|Name=mRNA_Ecto-sp13_S_contig12839.2344.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=432bp
MSLGAIASRAIALRQQFLRCSGNAAAAAAAAGGRGAGEPQVAVKIRPPRV
VVRPPAALPSPSSSSPVEAVARNAAAPQPTAKPYNPPAKAGGARWLGSPS
SRRGTAAGSPSVVELVERGGASFVAFADGRARGAFADRTIVSLGAPFFYR
PLRGSRCGGSGGGSGGRGISYCGSGGREGVATAVVRPGCSDDDKEEREED
REIECIRADGTVLRLTRRSLDRLGSFGERSGGCNSPAGDDCGVGALRPYV
VAVLRFADWAATHPADRRAAAGREAAGRAAAAAEAERNRRFVDLQLLAAK
RSVAPPSLLCYHRRGPDPRKPHDGSPSGAAGSRRGGHRSGDEANASPGLR
RRAVGVGGEENNDGQHKENSRPRRPGSRVHVVEGGFGVSRWGGGDGGRQR
NSLVAGLLEANRKVLMGEDMSRKCARGKLLW*
back to top

mRNA from alignment at Ecto-sp13_S_contig12839:3154..4811-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12839.2344.1 ID=mRNA_Ecto-sp13_S_contig12839.2344.1|Name=mRNA_Ecto-sp13_S_contig12839.2344.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1658bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12839:3154..4811- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGTCGTCCATGCCGACGGGAGCGAGGTTTGGCTGGAGGGCGACTTCGT
CCGCCTTGTTCGCCCTCCCGCCGCCCCGGCTCCACAGCCGCAGCAGCAGC
AGCAGCAGCGGCAGCGACTCTTGCACGTGTCGGCGGCGAGCACGGTCCGC
TTTCGAGTGCCGAGCCCGCGTGCGGAGCAGCACCCAGTCGGTAACCCGCC
TGCCGCCGATGTTGCTGCCGCGAGCGCTGTAGGTGTTCCTGGCATCCATC
CGCGTGTGCCGGCGATAACAGCGGCGGCGGCTACGCAAACAGCGGCGGCG
GCGGAAGCAGGTGGTGGGTGGACGAGCATGTCCCTCGGCGCCATCGCCTC
TAGAGCGATCGCGCTGCGGCAGCAGTTCTTGCGGTGTAGCGGCAACGCAG
CGGCGGCGGCGGCGGCGGCCGGGGGCAGGGGGGCGGGAGAGCCACAAGTC
GCCGTCAAGATCAGGCCGCCGCGCGTCGTTGTACGACCACCGGCAGCGCT
TCCGTCGCCGTCGTCGTCGTCGCCGGTTGAGGCCGTCGCGCGGAACGCTG
CAGCGCCACAACCCACCGCCAAACCCTACAACCCCCCGGCGAAAGCAGGA
GGGGCTCGGTGGCTGGGATCGCCTTCATCGCGACGAGGGACGGCGGCAGG
GTCCCCATCGGTGGTGGAACTGGTGGAACGCGGGGGCGCGTCGTTCGTTG
CGTTCGCGGACGGACGGGCGCGCGGGGCCTTCGCGGACCGCACCATCGTG
TCCCTGGGGGCGCCGTTTTTTTACCGCCCGCTTCGAGGGTCCCGCTGCGG
CGGCAGCGGCGGCGGAAGCGGCGGCAGGGGAATATCCTACTGCGGCAGCG
GAGGGCGTGAGGGTGTCGCGACAGCGGTAGTCCGGCCTGGATGTTCGGAT
GACGACAAGGAGGAGAGGGAAGAAGACCGGGAGATCGAGTGCATCCGTGC
GGACGGGACGGTGCTGCGCCTGACCAGGCGCTCGCTGGACCGGCTAGGAA
GCTTCGGCGAGAGGAGCGGCGGGTGTAACAGTCCCGCCGGTGATGACTGC
GGCGTTGGGGCGCTCAGGCCGTACGTCGTCGCCGTCCTCCGGTTCGCGGA
CTGGGCGGCGACCCATCCCGCTGACCGGCGGGCTGCGGCGGGGCGGGAGG
CGGCCGGGCGGGCGGCGGCGGCGGCCGAAGCGGAGCGAAACCGTCGCTTC
GTCGACCTCCAGCTGCTAGCGGCGAAGAGGAGCGTCGCGCCGCCTTCCCT
CCTGTGCTACCACCGCCGCGGGCCGGATCCACGGAAACCCCACGATGGGA
GTCCGTCCGGCGCGGCCGGGAGCAGGCGAGGCGGCCACAGAAGCGGGGAT
GAAGCGAACGCGTCCCCGGGTCTGCGGCGGCGTGCGGTTGGGGTAGGGGG
TGAGGAGAACAATGATGGCCAGCACAAGGAAAACAGCAGGCCGAGGCGGC
CGGGCAGCCGTGTTCATGTTGTAGAGGGGGGTTTCGGGGTATCGAGGTGG
GGGGGTGGCGACGGGGGTCGTCAGAGGAACTCGCTCGTGGCTGGATTGTT
AGAGGCCAACCGCAAGGTCTTGATGGGAGAAGACATGTCGAGGAAGTGTG
CTCGAGGGAAACTGTTGTGGTAGGGTCGTTCGCGCACGTTAGTTTGAATG
TGCGGACA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12839:3154..4811-

>mRNA_Ecto-sp13_S_contig12839.2344.1 ID=mRNA_Ecto-sp13_S_contig12839.2344.1|Name=mRNA_Ecto-sp13_S_contig12839.2344.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1296bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12839:3154..4811- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCCTCGGCGCCATCGCCTCTAGAGCGATCGCGCTGCGGCAGCAGTT
CTTGCGGTGTAGCGGCAACGCAGCGGCGGCGGCGGCGGCGGCCGGGGGCA
GGGGGGCGGGAGAGCCACAAGTCGCCGTCAAGATCAGGCCGCCGCGCGTC
GTTGTACGACCACCGGCAGCGCTTCCGTCGCCGTCGTCGTCGTCGCCGGT
TGAGGCCGTCGCGCGGAACGCTGCAGCGCCACAACCCACCGCCAAACCCT
ACAACCCCCCGGCGAAAGCAGGAGGGGCTCGGTGGCTGGGATCGCCTTCA
TCGCGACGAGGGACGGCGGCAGGGTCCCCATCGGTGGTGGAACTGGTGGA
ACGCGGGGGCGCGTCGTTCGTTGCGTTCGCGGACGGACGGGCGCGCGGGG
CCTTCGCGGACCGCACCATCGTGTCCCTGGGGGCGCCGTTTTTTTACCGC
CCGCTTCGAGGGTCCCGCTGCGGCGGCAGCGGCGGCGGAAGCGGCGGCAG
GGGAATATCCTACTGCGGCAGCGGAGGGCGTGAGGGTGTCGCGACAGCGG
TAGTCCGGCCTGGATGTTCGGATGACGACAAGGAGGAGAGGGAAGAAGAC
CGGGAGATCGAGTGCATCCGTGCGGACGGGACGGTGCTGCGCCTGACCAG
GCGCTCGCTGGACCGGCTAGGAAGCTTCGGCGAGAGGAGCGGCGGGTGTA
ACAGTCCCGCCGGTGATGACTGCGGCGTTGGGGCGCTCAGGCCGTACGTC
GTCGCCGTCCTCCGGTTCGCGGACTGGGCGGCGACCCATCCCGCTGACCG
GCGGGCTGCGGCGGGGCGGGAGGCGGCCGGGCGGGCGGCGGCGGCGGCCG
AAGCGGAGCGAAACCGTCGCTTCGTCGACCTCCAGCTGCTAGCGGCGAAG
AGGAGCGTCGCGCCGCCTTCCCTCCTGTGCTACCACCGCCGCGGGCCGGA
TCCACGGAAACCCCACGATGGGAGTCCGTCCGGCGCGGCCGGGAGCAGGC
GAGGCGGCCACAGAAGCGGGGATGAAGCGAACGCGTCCCCGGGTCTGCGG
CGGCGTGCGGTTGGGGTAGGGGGTGAGGAGAACAATGATGGCCAGCACAA
GGAAAACAGCAGGCCGAGGCGGCCGGGCAGCCGTGTTCATGTTGTAGAGG
GGGGTTTCGGGGTATCGAGGTGGGGGGGTGGCGACGGGGGTCGTCAGAGG
AACTCGCTCGTGGCTGGATTGTTAGAGGCCAACCGCAAGGTCTTGATGGG
AGAAGACATGTCGAGGAAGTGTGCTCGAGGGAAACTGTTGTGGTAG
back to top