mRNA_Ecto-sp13_S_contig12411.2004.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12411.2004.1
Unique NamemRNA_Ecto-sp13_S_contig12411.2004.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12411.2004.1 vs. uniprot
Match: D7G4K6_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4K6_ECTSI)

HSP 1 Score: 147 bits (371), Expect = 3.950e-39
Identity = 78/87 (89.66%), Postives = 79/87 (90.80%), Query Frame = 1 
Query:   19 GVVDVKEIAGALKENYSTAQISAGMGDAVTEGELANLLSSLSPDTSGDATGHASTSGTANKSINPAVVGSSPEADFDDFVRLFRGVF 279
            GVVDVKEIAGALKENYSTAQISAGMGDAVTEGELA LLSSLSP TSGDATGH STSGT N S NPA VGSSPEA+FDDFVRLF GVF
Sbjct: 1483 GVVDVKEIAGALKENYSTAQISAGMGDAVTEGELAALLSSLSPATSGDATGHTSTSGTTNNSTNPAGVGSSPEANFDDFVRLFHGVF 1569
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12411.2004.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G4K6_ECTSI3.950e-3989.66EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12411contigEcto-sp13_S_contig12411:2572..3494 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score147.5
Seed ortholog evalue3.1e-33
Seed eggNOG ortholog2880.D7G4K6
Model size284
KEGG koko:K17985
KEGG Pathwayko04137,ko04140,map04137,map04140
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.WD repeat-containing protein
EggNOG OGsKOG0266@1,KOG0266@2759
Cds size282
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03029,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462660.8646836-CDS-Ecto-sp13_S_contig12411:2571..27751681462660.8646836-CDS-Ecto-sp13_S_contig12411:2571..2775Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12411 2572..2775 -
1681462660.8738015-CDS-Ecto-sp13_S_contig12411:3416..34941681462660.8738015-CDS-Ecto-sp13_S_contig12411:3416..3494Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12411 3417..3494 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12411.2004.1prot_Ecto-sp13_S_contig12411.2004.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12411 2572..3494 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12411.2004.1

>prot_Ecto-sp13_S_contig12411.2004.1 ID=prot_Ecto-sp13_S_contig12411.2004.1|Name=mRNA_Ecto-sp13_S_contig12411.2004.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=94bp
CRHAFEGVVDVKEIAGALKENYSTAQISAGMGDAVTEGELANLLSSLSPD
TSGDATGHASTSGTANKSINPAVVGSSPEADFDDFVRLFRGVF*
back to top

mRNA from alignment at Ecto-sp13_S_contig12411:2572..3494-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12411.2004.1 ID=mRNA_Ecto-sp13_S_contig12411.2004.1|Name=mRNA_Ecto-sp13_S_contig12411.2004.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=923bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12411:2572..3494- (Ectocarpus species13 EcNAP12_S_4_19m)
TGCCGGCATGCTTTCGAAGGCGTTGTCGACGTCAAGGAGATCGCCGGGGC
GCTGAAGGAGAACTATTCCACAGCTCAGGTTCGTCCAGACAACCAAACGA
TTTCGTGTGCAATTATATGCGTGTGTGTGTTTTCGCCCTATTTTTCATGG
CTACAGTCCCCCCATTTTTCGTGGTGAGACGTGTACTACACTTGTTCAGT
ACTACACTTTTCAGTGTATTTTTTCGTACAACTACAGCCATCCAGGGTCA
CACAGGAGGCGGTAAACACTAGGGCTTTTTTCTTCTTTTTATTTACTTTC
ATGCCCCACCTTCCTCCGGTGCGTGCTAAATTTGATTTTATCGCGAGAAG
GGTCCAGCTGTCCCTTTCCCTCGTCAACGGTGCTAACGCCGAAGTCTGGC
ACTCACGAGAGTTTTTCAGCTTAGTTCGCTTTCACCCGCAGACTTTGTAA
ATTTGTCGCCCCATCGGGATTCGGACTCACGATCTCTGCGACTAGCTGTT
CACGAGGAAACCACTAGAACACCGGGGCGACCGGCGGGTTATATACGGAA
AACAAACACGTTGTGCAGCGAGGTTGTTGCCTCCTGCGGGAGGTCAAGAA
GCTTCACAGCAGCATAGAAAAGTGATCTTCTCTTGTGCTTTTTATTTTTC
ATGCCGGCGTGTTTCTTCCTTTTCCCGACATTTTGCTGTTGTTGTCGCGG
TAATCTGGTATCATCACAGATTTCTGCGGGGATGGGGGACGCCGTCACCG
AGGGGGAACTGGCCAACCTGCTTTCGTCCCTTTCGCCCGACACGAGCGGT
GACGCGACCGGACACGCTTCTACCTCTGGCACAGCGAACAAAAGTATAAA
TCCAGCCGTTGTTGGGTCAAGTCCGGAGGCCGACTTCGACGACTTCGTGC
GCCTCTTTCGTGGAGTATTTTAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12411:2572..3494-

>mRNA_Ecto-sp13_S_contig12411.2004.1 ID=mRNA_Ecto-sp13_S_contig12411.2004.1|Name=mRNA_Ecto-sp13_S_contig12411.2004.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=282bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12411:2572..3494- (Ectocarpus species13 EcNAP12_S_4_19m)
TGCCGGCATGCTTTCGAAGGCGTTGTCGACGTCAAGGAGATCGCCGGGGC
GCTGAAGGAGAACTATTCCACAGCTCAGATTTCTGCGGGGATGGGGGACG
CCGTCACCGAGGGGGAACTGGCCAACCTGCTTTCGTCCCTTTCGCCCGAC
ACGAGCGGTGACGCGACCGGACACGCTTCTACCTCTGGCACAGCGAACAA
AAGTATAAATCCAGCCGTTGTTGGGTCAAGTCCGGAGGCCGACTTCGACG
ACTTCGTGCGCCTCTTTCGTGGAGTATTTTAG
back to top