mRNA_Ecto-sp13_S_contig12100.1790.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12100.1790.1
Unique NamemRNA_Ecto-sp13_S_contig12100.1790.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12100.1790.1 vs. uniprot
Match: D8LLU0_ECTSI (PKD domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLU0_ECTSI)

HSP 1 Score: 159 bits (401), Expect = 1.610e-45
Identity = 75/87 (86.21%), Postives = 79/87 (90.80%), Query Frame = 1 
Query:    1 VVVQIGLGELLCDSLEDAPDSTFLRFNVSSTEAVIAERTSFSSVDGNVFPDGETRKIWTGEVVDPEPPAGSAPRTVSMTWTEPCSVE 261
            VVV IGLGELLCDSLEDA DST LRFN+SSTE VIAERTS+SS+DGN+FPDGETRK W GEVVDPEPPAGSAPRTVSMTWT PC VE
Sbjct:   79 VVVHIGLGELLCDSLEDASDSTLLRFNISSTETVIAERTSYSSIDGNIFPDGETRKTWMGEVVDPEPPAGSAPRTVSMTWTNPCGVE 165
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BLAST of mRNA_Ecto-sp13_S_contig12100.1790.1 vs. uniprot
Match: A0A6H5JF50_9PHAE (LNR domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF50_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 3.910e-34
Identity = 62/87 (71.26%), Postives = 70/87 (80.46%), Query Frame = 1 
Query:    1 VVVQIGLGELLCDSLEDAPDSTFLRFNVSSTEAVIAERTSFSSVDGNVFPDGETRKIWTGEVVDPEPPAGSAPRTVSMTWTEPCSVE 261
            V+  I LG+LLCDSLEDA DS+ LRF +SSTE VIAERTS+SS+DGNV PDG  RK W GEVVDPEP   S PRTVSMTWT+PC +E
Sbjct:  167 VMGDIELGDLLCDSLEDATDSSLLRFTISSTETVIAERTSYSSIDGNVLPDGNARKTWLGEVVDPEPSTNSIPRTVSMTWTDPCDIE 253
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BLAST of mRNA_Ecto-sp13_S_contig12100.1790.1 vs. uniprot
Match: D8LMP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMP1_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 1.110e-18
Identity = 45/85 (52.94%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:    1 VVVQIGLGELLCDSLEDAPDSTFLRFNVSSTEAVIAERTSFSSVDGNVFPDGETRKIWTGEVVDPEPPAGSAPRTVSMTWTEPCS 255
            VV  I LG+LLCDSLEDA DS+ LRF +SSTE VIAERTS+SS+DG++ PDG TRK +  ++V     + ++  + S+  + PCS
Sbjct:   81 VVGDIELGDLLCDSLEDASDSSLLRFTISSTETVIAERTSYSSIDGSILPDGNTRKTFLLKLV-----SRNSDGSTSIVTSVPCS 160
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BLAST of mRNA_Ecto-sp13_S_contig12100.1790.1 vs. uniprot
Match: D7FTV1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTV1_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 2.360e-16
Identity = 45/84 (53.57%), Postives = 58/84 (69.05%), Query Frame = 1 
Query:    4 VVQIGLGELLCDSLEDAPDSTFLRFNVSSTEAVIAERTSFSSVDGNVFPDGETRKIWTGEVVDPEPPAGSAPRTVSMTWTEPCS 255
            V  I LGELLCDSLEDA DS+ LRF +SSTE VIAERTS+SS+DG+V  DG TR  +  ++V     + +A  + S+  + PCS
Sbjct:   10 VGDIELGELLCDSLEDAADSSLLRFTISSTETVIAERTSYSSIDGSVLSDGITRMSFLLKLV-----SRNADGSTSIVTSVPCS 88
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BLAST of mRNA_Ecto-sp13_S_contig12100.1790.1 vs. uniprot
Match: A0A6H5JRC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRC1_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 2.340e-15
Identity = 40/71 (56.34%), Postives = 47/71 (66.20%), Query Frame = 1 
Query:   88 STEAVIAERTSFSSVDGNVFPDGETRK-------------IWTGEVVDPEPPAGSAPRTVSMTWTEPCSVE 261
            +++ VIAERTS+SS+DG+V  DG TRK              W GEVVDPEP A S PRTVSMTWT+PC  E
Sbjct:    5 TSQTVIAERTSYSSIDGSVLSDGITRKDELTGDGSHGLFQTWLGEVVDPEPSANSIPRTVSMTWTDPCDTE 75
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12100.1790.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LLU0_ECTSI1.610e-4586.21PKD domain protein n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6H5JF50_9PHAE3.910e-3471.26LNR domain-containing protein n=2 Tax=Ectocarpus s... [more]
D8LMP1_ECTSI1.110e-1852.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FTV1_ECTSI2.360e-1653.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JRC1_9PHAE2.340e-1556.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12100contigEcto-sp13_S_contig12100:220..1738 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size262
Hectar predicted targeting categoryother localisation
Exons3
Cds size261
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462643.6657877-CDS-Ecto-sp13_S_contig12100:219..3121681462643.6657877-CDS-Ecto-sp13_S_contig12100:219..312Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12100 220..312 -
1681462643.6762283-CDS-Ecto-sp13_S_contig12100:998..10701681462643.6762283-CDS-Ecto-sp13_S_contig12100:998..1070Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12100 999..1070 -
1681462643.6879025-CDS-Ecto-sp13_S_contig12100:1642..17381681462643.6879025-CDS-Ecto-sp13_S_contig12100:1642..1738Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12100 1643..1738 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12100.1790.1prot_Ecto-sp13_S_contig12100.1790.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12100 220..1738 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12100.1790.1

>prot_Ecto-sp13_S_contig12100.1790.1 ID=prot_Ecto-sp13_S_contig12100.1790.1|Name=mRNA_Ecto-sp13_S_contig12100.1790.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=87bp
VVVQIGLGELLCDSLEDAPDSTFLRFNVSSTEAVIAERTSFSSVDGNVFP
DGETRKIWTGEVVDPEPPAGSAPRTVSMTWTEPCSVE
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mRNA from alignment at Ecto-sp13_S_contig12100:220..1738-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12100.1790.1 ID=mRNA_Ecto-sp13_S_contig12100.1790.1|Name=mRNA_Ecto-sp13_S_contig12100.1790.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1519bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12100:220..1738- (Ectocarpus species13 EcNAP12_S_4_19m)
GTTGTGGTGCAAATCGGGCTGGGTGAGCTGCTTTGTGATAGCCTGGAGGA
TGCCCCGGACTCAACGTTCTTGCGGTTTAATGTCAGCTCCACTGAGGTAT
GCGCTTGCGAACAGGCGCGACAAAGAAGTCGATCAGCACGTGGTCGATCT
GGCGCGAAAGTCCGAGGCGGAGAGAAGGACAGTACATGACAAGACAAACT
TGTTGTGCCTCGATCGATGGGCGCCCTGCCGCCGAGCCAACCTCAAGACC
AAATTGAAAGAGCGCGCTTTCAAGTCCCCTTTCGGCATGCCGTTGCAGCC
AAGGCACTACCCCCGTCATGCTTCGCAGAAAGGTTGACCAAGTGAACATC
GCCCTCGGCATGCCTGCCCGCGTGCTTGCTTCAGAGAGTATGGCGCATCA
GTTGGTCTGTATGCTCTTGTTCGGTTATTATGTGTGCCACTTGGTTCACG
TGATGTTCCCGCTGTTGAGAAGGAAAGAAGGTCAGCTCCACTGTTTTTCC
CTGTCTGCCTGTCCTGTTCGTTCATATTTCTGTCTGTCTATCTGTCTATC
TGTCTGTCCGTCTGTCCGTCTGTCTGTCCGTCTGTCTGTGTGTCATATTT
TCTCTCAAAGCCAAATAACCCTCGGACCTCCATGTTCTATCTGATGGATT
TGCACCTCTCGCTTGCAGGCGGTGATTGCAGAGCGCACCTCGTTCTCGTC
CGTCGACGGGAACGTCTTTCCGGACGGAGAAACGCGCAAGGTAAGTTTGC
CTACCAGCAGGTAGGTACATGCTTGTGGAGTCCACCGTAGAACGTATCGG
AGCAGCCTTTTCTACTTTTGAATCACAGCTGTATACGGCGTTGAGCAGGC
TGCCCCCTCCCGTCAATTTCGAAGGAAGCAAAGAACACGTTTCGTAACTC
ATTTGACAACCCGAGCAGCCCTTTGGCCTTCGTGTTTTAAGTTCAAAAAA
CTCTGTTCAATCAGTATCGGTTGCCGTCATATTTTCCACCCCATATCTTG
GTTATCAGTTCATGATGCCAGACGACTCGACCTGGCCGTTTCACGGCCAG
GAGGGGGGTAGACTCGAAATTTTTTTCAGGTGTGCCTCTCTTTTACGCCC
TGTGCAATTTTGAGCACCGTAGTGTAGAGCTCCAGCTTCGCGCACGTTGG
TCCGTTTCGGTTGAGGGTGCTGGTGGCCGTTCTTGCGAGGCATCGAGAAT
CGAAGATATTGATCCCAAACAATTTGCTCGATGCTTCGCTCGCCAAGCCA
CCCAGAGTGGTTTAAAATGTTTGGGGGCAGGCTATCTGTGAGCGTGGCAT
TCAACCGGCCCCCCTCTGTTGATAGCCATTTTTTCCCGCACGCACTCACT
CCTTTTTGCTGTGTAACATGCTCGCAAATGGCACGCGTCTCCCAACACCG
CAATGTGTGGCCCTTTCGGTGGCTAGATCTGGACGGGTGAGGTCGTTGAT
CCTGAACCTCCCGCTGGTTCCGCACCAAGGACTGTCAGTATGACATGGAC
CGAACCATGTAGCGTGGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12100:220..1738-

>mRNA_Ecto-sp13_S_contig12100.1790.1 ID=mRNA_Ecto-sp13_S_contig12100.1790.1|Name=mRNA_Ecto-sp13_S_contig12100.1790.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=261bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12100:220..1738- (Ectocarpus species13 EcNAP12_S_4_19m)
GTTGTGGTGCAAATCGGGCTGGGTGAGCTGCTTTGTGATAGCCTGGAGGA
TGCCCCGGACTCAACGTTCTTGCGGTTTAATGTCAGCTCCACTGAGGCGG
TGATTGCAGAGCGCACCTCGTTCTCGTCCGTCGACGGGAACGTCTTTCCG
GACGGAGAAACGCGCAAGATCTGGACGGGTGAGGTCGTTGATCCTGAACC
TCCCGCTGGTTCCGCACCAAGGACTGTCAGTATGACATGGACCGAACCAT
GTAGCGTGGAG
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