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Homology
BLAST of mRNA_Ecto-sp13_S_contig12079.1765.1 vs. uniprot
Match: A0A6H5JE55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE55_9PHAE) HSP 1 Score: 401 bits (1030), Expect = 9.000e-130 Identity = 215/282 (76.24%), Postives = 223/282 (79.08%), Query Frame = 2
Query: 761 DCTLDDYGCSVDNDLCDTGDDNGTLLTPEIDDDDGEDDEPCPAELTACLADETCGACFRGATLDGSCDGPGTNCVDLANYYCCVAGDDCSDNPLAVGYINCMIENQLDGEPCVLTDACVYTADDXXXXXXXXXXXXXXXXIEVPEAAADDDRDDIDRGVGELFPWSPTSSXXXXXXASHGGRXXXXXXXXXGRGRGGDDGGGAMCLTHQAICMADSDCAACMAGATRDGSCDATVPDCAGVADYYCCLAGDARGCSDNALLLDLINCEIELDSCTLTDLCGD 1606
DCTLDDYGCSVDNDLCDTGDDNGTLL EIDDDDGED+EPCP ELTACLADETCGAC+ GATLDGSCDGP TNCVDLANYYCCVAGDDCSDNPLAVGYI+ I + D + T EVPEAAADDDRDDI+RGVGELF WSPTSSXXXXXX HGGR GR GDDGGGAMCLT QAIC+ADS CAACMAGATRDGSCDATVPDCAGVADYYCCLAGD RGCSDNALLLDLINCEIELDSCTLT+LCGD
Sbjct: 147 DCTLDDYGCSVDNDLCDTGDDNGTLLISEIDDDDGEDEEPCPDELTACLADETCGACYGGATLDGSCDGPATNCVDLANYYCCVAGDDCSDNPLAVGYISERITAIAERGGSDDDDEGMVT--------------------EVPEAAADDDRDDIERGVGELFSWSPTSSXXXXXXXXHGGRGGE------GRXXXGDDGGGAMCLTQQAICVADSACAACMAGATRDGSCDATVPDCAGVADYYCCLAGDVRGCSDNALLLDLINCEIELDSCTLTELCGD 402
BLAST of mRNA_Ecto-sp13_S_contig12079.1765.1 vs. uniprot
Match: D8LMC9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMC9_ECTSI) HSP 1 Score: 218 bits (554), Expect = 2.030e-62 Identity = 137/272 (50.37%), Postives = 150/272 (55.15%), Query Frame = 2
Query: 881 CPAELTACLADETCGACFRGATLDGSCDGPGTNCVDLANYYCCVAGD--DCSDNPLAVGYINCMIENQLDGEPCVLTDAC-------------------------VYTADDXXXXXXXXXXXXXXXXIEVPEAAADDDRDDIDRGVGELFPWSPTSSXXXXXXASHGGRXXXXXXXXXGRGRGGDDG---GGAMCLTHQAICMADSDCAACMAGATRDGSCDATVPDCAGVADYYCCLAGDARGCSDNALLLDLINCEIELDSCTLTDLCGD 1606
C + C+AD C AC GAT DGSCD +C +A+YYCC+AGD CSDN L + INC IE LD C LTD C + P A ADDD +IDRG GE F WSPTS XXXXXX H G GR D G GG +CL QAIC+ADSDCAACMAGATRDGSCD TVPDCAGVADYYCC G GCSDNALLLD INC + L+SCTLTDLCGD
Sbjct: 90 CLTQQAICMADLDCAACMAGATRDGSCDATLPDCAGVADYYCCLAGDVRGCSDNVLLLDLINCEIE--LDS--CTLTDLCGDVHGGXXXXXXXXXXXXXXXXXXXXXXKNGNGTDNHEHSTETPWLKPGEPGAGADDDAQNIDRGFGEFFTWSPTSXXXXXXXXXHE-EQHRGRGRVGGGGRDDDSGRGDGGNVCLEQQAICLADSDCAACMAGATRDGSCDTTVPDCAGVADYYCCELGGTEGCSDNALLLDFINCGVALESCTLTDLCGD 356
BLAST of mRNA_Ecto-sp13_S_contig12079.1765.1 vs. uniprot
Match: D8LMC8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMC8_ECTSI) HSP 1 Score: 144 bits (364), Expect = 4.720e-35 Identity = 68/72 (94.44%), Postives = 70/72 (97.22%), Query Frame = 1
Query: 1 EMVTSCADEITTCAQDADCLSCMMAPSVNDGSESCEDMVTSDTPCSGVENMLCCLYGDTETCRDNAPFLGFA 216
EMVTSCADEI TCAQDADCLSCMMAPSVNDGSESCE+MVT+DTPCSGVENMLCCLYGDTETCRDNAPFL FA
Sbjct: 284 EMVTSCADEIATCAQDADCLSCMMAPSVNDGSESCENMVTADTPCSGVENMLCCLYGDTETCRDNAPFLEFA 355
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Model size | 1606 |
| Hectar predicted targeting category | other localisation |
| Exons | 9 |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-05_002300.1 |
| Cds size | 699 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681462641.326985-UTR-Ecto-sp13_S_contig12079:24..27 | 1681462641.326985-UTR-Ecto-sp13_S_contig12079:24..27 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig12079 25..27 + |
| 1681462641.392777-UTR-Ecto-sp13_S_contig12079:3090..3242 | 1681462641.392777-UTR-Ecto-sp13_S_contig12079:3090..3242 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig12079 3091..3242 + |
| 1681462641.4004326-UTR-Ecto-sp13_S_contig12079:3601..3805 | 1681462641.4004326-UTR-Ecto-sp13_S_contig12079:3601..3805 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig12079 3602..3805 + |
| 1681462641.4085753-UTR-Ecto-sp13_S_contig12079:4105..4185 | 1681462641.4085753-UTR-Ecto-sp13_S_contig12079:4105..4185 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig12079 4106..4185 + |
| 1681462641.4207692-UTR-Ecto-sp13_S_contig12079:4546..4964 | 1681462641.4207692-UTR-Ecto-sp13_S_contig12079:4546..4964 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig12079 4547..4964 + |
| 1681462641.4324841-UTR-Ecto-sp13_S_contig12079:5139..5189 | 1681462641.4324841-UTR-Ecto-sp13_S_contig12079:5139..5189 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig12079 5140..5189 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681462641.340626-CDS-Ecto-sp13_S_contig12079:27..241 | 1681462641.340626-CDS-Ecto-sp13_S_contig12079:27..241 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig12079 28..241 + |
| 1681462641.3515944-CDS-Ecto-sp13_S_contig12079:936..1085 | 1681462641.3515944-CDS-Ecto-sp13_S_contig12079:936..1085 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig12079 937..1085 + |
| 1681462641.359809-CDS-Ecto-sp13_S_contig12079:2044..2201 | 1681462641.359809-CDS-Ecto-sp13_S_contig12079:2044..2201 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig12079 2045..2201 + |
| 1681462641.3705082-CDS-Ecto-sp13_S_contig12079:2570..2689 | 1681462641.3705082-CDS-Ecto-sp13_S_contig12079:2570..2689 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig12079 2571..2689 + |
| 1681462641.3815978-CDS-Ecto-sp13_S_contig12079:3030..3090 | 1681462641.3815978-CDS-Ecto-sp13_S_contig12079:3030..3090 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig12079 3031..3090 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig12079.1765.1 >prot_Ecto-sp13_S_contig12079.1765.1 ID=prot_Ecto-sp13_S_contig12079.1765.1|Name=mRNA_Ecto-sp13_S_contig12079.1765.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=233bp
MVTSCADEITTCAQDADCLSCMMAPSVNDGSESCEDMVTSDTPCSGVENM LCCLYGDTETCRDNAPFLGFASCAAHTVLPDDQCTLTELCSSSSSRTTSE SWDSDSDDDYDPCPVELVACQDDESCRACLDIASTDESCDITHTDCSGLT DYFCCVIDGMGSCRNNHLLLDYVNCGIGWSSCTLTDLCDYTPEVADDDVS DGYTPELVDDYVYTRIISSSNSFKAVTLIAFR* back to topmRNA from alignment at Ecto-sp13_S_contig12079:25..5189+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig12079.1765.1 ID=mRNA_Ecto-sp13_S_contig12079.1765.1|Name=mRNA_Ecto-sp13_S_contig12079.1765.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5165bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12079:25..5189+ (Ectocarpus species13 EcNAP12_S_4_19m) GAAATGGTCACTTCCTGCGCGGACGAAATCACAACCTGCGCTCAGGACGC
CGACTGCCTGTCCTGCATGATGGCGCCATCGGTCAACGACGGGTCCGAAT
CGTGCGAGGACATGGTCACCTCCGATACCCCGTGCTCCGGCGTGGAAAAC
ATGCTCTGCTGCCTTTACGGGGACACCGAGACCTGTCGAGACAATGCTCC
GTTCCTCGGATTCGCCAGTGAGTCTGCAGGAGACAGTGATAATTTTCATC
TGTCGTATTCGTATCACAACGCGATTTTTCAGTCGCTAACATGCCAACGC
AACACGAACCTACCATGACATACCGGAGGGCTGTATTCCGCTCTCCTTTC
TTGGTATAACCGTCCACGATGTTATGGACCCTTCGATACATCGTCAGATG
TGCGCATCCACCTCGCAATTAACTTCGAACACTTTGTTCTGACCCATGAC
AATGCGTTTGCGTATCCGACGTGCGACAGGTTCATGAGTGATGGACCCCT
CAAATCTTCACATTTATCCCCGCGCAATGGGGACGTTCACTGATCTTACG
TGATCACCCTTGCAGAACAGGCGTGACACGCTTGCCTTTGAACTAAAAAA
ACGTAACGGTGGCATGCTGTATGCATGTAAGAGTCTTGTTTTTTGTTGAA
CGGACTGCCCAGGAGTGTTTCTCGCGTTAAATTGAATCAAACCTTGCATC
GTCCAGCGTTCCAAATGCCACCTCTCCCTCTTTCGATGATACACCTGAAG
CCTACGACAACTTTCCAGAGATCATTTTTCTTTCGAACAATGATATCCTC
ACTGACACTTGAGACCTGTTGACCGCTTTCGGATCGTCGCTTCACCAACA
AGCAATAATGGACAGCCTTCACCCCGAACGTTACTATTGATCAATCAACG
CGCGTCACACAGGCTGCGCCGCGCACACCGTCCTTCCCGATGACCAGTGC
ACATTGACCGAGCTCTGTAGCAGCAGCAGCAGCAGAACGACAAGCGAGTC
GTGGGACTCTGACTCAGACGATGACTATGACCCGTGCCCGGTCGAACTTG
TCGCATGCCAGGTGGGTTTGGAGTTCATCATTTTTTTTACCGCTGTCACT
GTCCTATCATCCTTGCTTTAGACGCCGATGATGTGTGCTTCTCCGAAGGG
TACATCACTGCGCTGTCCAACCTCTCCTTCCGTTTAGTTTTTTCGTTGTT
CCTCAACGACCCGACCCATCGCACGCCGAAATGACCAGTACAGGCTTTAG
AGTAGACGATGGTGGAACATCAACGTGCTTTGAAAAAATGCAACTTTGGA
GGTTTGTGCGTAGAACTTCGAAAAAATCTACGTATTTTCGGAGAACTAGT
CGTTATTCGCACAGGAATACCCACGCATGAACAGTGCCAGACGTTAGGTG
TTGGTGTCCTCGCGATGAATGTTTAGGTTCTCCGCTCGGAACCAACCCTC
CCACCGAGGAATATAAAGACTGTCGAATCGCTACTACTGTATGTAGTACG
GTTTTCGGTAAGAGCTCTAGGAAACAACGTGACGTGTAGAGTATTTATTC
GAGGCCTTGAGGATAAGGTTTTGAGAGCTTGGGCACTGTGTAAACTAGGA
CGCAACACCAGCAAGCAAGCATTCCATTACGAACCATGTTATTCCTATTG
AAAATATTCCATCAGTTCTACTAAAGAAGGCAACCACCGGAGTGTCTCGT
TCACGCGCCAGAAAACATTTCCTTAACAATTGGTGAATGAACCGCCGTGT
TTACCTCGCGCATACAATACCGAACGTTGTAAAACCAAGAGGAGGGTTAG
GAGTTTCAAATATTTAAGGTATTCTCGTAAGCCCCGCATCGAAATTTCAG
CGTTGATAGAACGTAAAACCACACATTCGACCGATAGCCAGAGATACGTT
TTGTCGTGGGGCGGGGGGGGGGGGTTCATTGGTCGGTGTTTGTTCGCATC
TACTATCTACAGCCTCCTTGTTAGCTGATGTAACCTTTGGGTTTTCTGTC
GTTTGTGTATCCACTTTCAGGATGATGAGTCTTGCAGAGCTTGTCTGGAT
ATCGCTTCTACGGACGAAAGCTGCGACATCACCCACACCGACTGCTCCGG
CTTGACGGACTATTTCTGTTGCGTGATCGATGGAATGGGCAGCTGCAGAA
ACAACCACTTACTTTTGGACTACGTCAGTGAGTTCGCTAATTGCGTTGCA
CGGGATTCGACACGAGTACGTCGAATTGTAAGCTTTCGCGCACACACTGG
GTCTGCGTTGATGCATCGGTGATTGCCGCTGCGTGTCCGCCTTGGGATAG
ATTATTACATGCAGTGCCTTCAATATTTCACGCCGAACCATTGTTGCTAC
GCGGCCCTGCTACCTCAAAGAAAATGCGCCTGTGGAGACAAGTTTCGGCC
CTAAAAATAATCAATGCTACCGTCGCGGTCGCCAGGTAATGGAGGAATAT
CAATAGCAAAAACAAAAACACCAACCGACCCGTAAGGGCGTAATTCACGT
TCCCGTGTCCCCCAAAACGTTCTCTTTTGCGTCAAATATTTACCAGACTG
CGGAATAGGGTGGTCATCGTGCACGTTGACTGATCTCTGCGACTACACAC
CTGAGGTGGCCGACGACGACGTCAGCGATGGCTACACACCTGAGTTGGTC
GACGATTACGTGTACGTCAGCACTGAAATCGACGGCAACGACGACGACGA
CGACGACGACGACGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGGTTGTTTCGGGCTC
AGCGAGACACGAATCATTAGCAGCAGCAACAGCTTTAAGGCTGTCACACT
GATCGCTTTTCGGTGAAACCTAATGCAATACAACACCGACAATCTGGACC
TTCGTGTCGCCGGTGATCGAGTCAGACTGCACGCTCGATGACTATGGCTG
CAGCGTGGACAACGACCTTTGCGACACAGGGGACGACAACGGAACGCTGC
TCACACCGGAAATCGATGGTACGGCATACGGTGTAATATATTGCAAAACG
GGAATGGAAAAGCAAAGCACGGTCTCTCCCCTCCCATATAGCGTATGAGT
ATGCCTGTGGCGGATCTTGCTCGCGTCACCATACGTTGGCCTCCCGACGT
GACGTCTAGGGTTTAACAAGTCTCTACGACCGTGTAGCATGAGCGCCTTC
TAGCTTTGCCTTCACATCTCGAGGAAGGCACCCTGTGATTGAACCTTCTT
TCTTCGTGCTCTGCCAACGCAATACGCGAGAGACTGTTTGGTCTTTTTCC
CGACCATATACATGTATGAATCTGCTGGCGTAATGTCGGTGATGTCGGTG
CCCCATATCAACAACCGACATGAACAGATGACGACGGGGAGGATGACGAA
CCATGTCCTGCCGAGCTAACTGCATGTCTGGCGGACGAGACATGCGGCGC
ATGCTTCCGAGGTGCTACATTGGACGGGAGCTGCGATGGCCCGGGCACCA
ACTGCGTTGACCTGGCGAACTACTACTGCTGCGTCGCCGGGGATGACTGC
AGCGACAACCCTCTGGCCGTTGGATACATCAGTGAGCGCATCACTTCAAT
CGTTGATTAAAATACTTGGACTGATACTACCCATACCGCCGGTCCAAGAG
AGGGCAGTAGTCGGATGCATGGTTAAGGGTGACGATCTGGCTAGGATTGA
AACCACGGCCGTTTCCGTAAACACAATGGTGATGAACGTGAGTGTATCGT
CCGTTGGACCCCGTGAGGCCCGATACCATCGTCGTCGACTGTGTGGGAGG
TGTAAATACAATGGTCACATCTGATGCTTCACCGTGCGTTTTCCTCTGCG
ATTCCTCCATTCCTCGCCCCACCAAAACCAGACTGCATGATCGAGAACCA
GCTGGACGGCGAGCCGTGCGTATTGACCGATGCCTGTGTCTACACAGCTG
ATGATGACGCGGTGCGGGAAACCCCACAGGATTGTCGTGATCTCGCGTGC
CCGACCAGAGTATGCACGCAAATCTATCCAACGCAGACAAAAAATGCGGA
ATCCGACCAACGCGGACAAACTGTGCGGAACGCAACAAACTCCAAGCGTT
CCAATTGCGTTGAAATCAGATACCGAATCGCGGAAACACACCGAGTGTCG
ACCCCGACTTGGAGGCCTGTGAAAGCCCAAACGTAGCGGGGGCGTTTTTC
GAAGAAGTTGTGCGCCAGGACCATCAGTCAAACAAATTTTCACTCTCCCA
TATCCGTTTGACTGAATCGCCCCCAGACATGACTAGAAACGATGCCTTTG
GCCTGTTGCCCCGAAACCCTAGGCTGAGCGAGGTGGCAGCGACGACGACG
ATGAAGGAATGGTCATCGAAGTCCCCGAAGCCGCTGCTGATGATGACCGC
GACGACATCGATCGTGGTGTTGGGGAACTGTTTCCCTGGTCGCCGACGTC
TAGTCCCACCTCTTCCCCCACGGCATCTCACGGCGGCCGCGGCGGTCGCG
GCGGCCGCGGCGGTGAAGGCCGGGGTCGCGGTGGTGATGACGGCGGTGGT
GCCATGTGTCTCACCCACCAGGCCATCTGTATGGCGGATTCAGACTGCGC
CGCGTGCATGGCCGGAGCCACGAGAGACGGGAGCTGCGACGCCACCGTCC
CTGACTGCGCCGGCGTGGCCGACTACTATTGCTGCCTCGCAGGGGACGCG
CGAGGCTGCAGCGACAACGCGTTGCTCTTAGACCTGATCAGTGAGAGCTA
TTGCATGATTGGTGTTGAGTTTCAGCAGGGATGCCATCAACAGTTGGACT
GGATAAACTACAACGACCACGAGAAGCGAAGCCCATGACAACCACAACCA
TAACAACACGTGTTCTGGCTGATTGCCCACCCACATCCTTCTTTCTCGTG
CCAACCCTGAACTAGACTGCGAGATCGAGCTGGATTCGTGCACGCTGACC
GACCTCTGCGGCGAT back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig12079:25..5189+ >mRNA_Ecto-sp13_S_contig12079.1765.1 ID=mRNA_Ecto-sp13_S_contig12079.1765.1|Name=mRNA_Ecto-sp13_S_contig12079.1765.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=699bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12079:25..5189+ (Ectocarpus species13 EcNAP12_S_4_19m) ATGGTCACTTCCTGCGCGGACGAAATCACAACCTGCGCTCAGGACGCCGA CTGCCTGTCCTGCATGATGGCGCCATCGGTCAACGACGGGTCCGAATCGT GCGAGGACATGGTCACCTCCGATACCCCGTGCTCCGGCGTGGAAAACATG CTCTGCTGCCTTTACGGGGACACCGAGACCTGTCGAGACAATGCTCCGTT CCTCGGATTCGCCAGCTGCGCCGCGCACACCGTCCTTCCCGATGACCAGT GCACATTGACCGAGCTCTGTAGCAGCAGCAGCAGCAGAACGACAAGCGAG TCGTGGGACTCTGACTCAGACGATGACTATGACCCGTGCCCGGTCGAACT TGTCGCATGCCAGGATGATGAGTCTTGCAGAGCTTGTCTGGATATCGCTT CTACGGACGAAAGCTGCGACATCACCCACACCGACTGCTCCGGCTTGACG GACTATTTCTGTTGCGTGATCGATGGAATGGGCAGCTGCAGAAACAACCA CTTACTTTTGGACTACGTCAACTGCGGAATAGGGTGGTCATCGTGCACGT TGACTGATCTCTGCGACTACACACCTGAGGTGGCCGACGACGACGTCAGC GATGGCTACACACCTGAGTTGGTCGACGATTACGTGTACACACGAATCAT TAGCAGCAGCAACAGCTTTAAGGCTGTCACACTGATCGCTTTTCGGTGA back to top
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