mRNA_Ecto-sp13_S_contig12030.1734.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12030.1734.1
Unique NamemRNA_Ecto-sp13_S_contig12030.1734.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12030.1734.1 vs. uniprot
Match: D8LD73_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD73_ECTSI)

HSP 1 Score: 238 bits (608), Expect = 1.670e-72
Identity = 124/146 (84.93%), Postives = 128/146 (87.67%), Query Frame = 1 
Query:    1 MLEAEARARRYVRDKLAGDGAGAAEFVAPPELPKAARGQAFGGERKPAPPGRTGEGLGPAQTTPLAKIESQRPAAAA----GDVRDEGEAGATGAEGSDNPFVVGLDTRYDESPVGPIGEADDDPFEAPFYPFDDDGPPLNGRAFQ 426
            MLEAEARARRYVRDKLAGDGAGAAEFVAPPE PKAARG+AFGGERKPAP  RTGEGLGP QTTP AK+E Q+PAAA     GDVRD+GEAG  GAEG DNPFVVG DTRYDE PVGPIGEADDDPFEAPFYPFD DGPPLNGRA Q
Sbjct:  540 MLEAEARARRYVRDKLAGDGAGAAEFVAPPESPKAARGRAFGGERKPAPSARTGEGLGPGQTTPPAKVERQQPAAAXXXXXGDVRDKGEAGGAGAEGGDNPFVVGADTRYDEGPVGPIGEADDDPFEAPFYPFDADGPPLNGRALQ 685
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BLAST of mRNA_Ecto-sp13_S_contig12030.1734.1 vs. uniprot
Match: A0A6H5K5Z2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5Z2_9PHAE)

HSP 1 Score: 219 bits (559), Expect = 6.800e-70
Identity = 119/148 (80.41%), Postives = 123/148 (83.11%), Query Frame = 1 
Query:    1 MLEAEARARRYVRDKLAGDGAGAAEFVAPPELPKA--ARGQAFGGERKPAPPGRTGEGLGPAQTTPLAKIESQ----RPAAAAGDVRDEGEAGATGAEGSDNPFVVGLDTRYDESPVGPIGEADDDPFEAPFYPFDDDGPPLNGRAFQ 426
            M EAEARARRYVRDKLAGDGAG AEFVAPPE PKA  ARG+AFGGERKPAP  RTGEG GP QTTP AK+ESQ           D+ DEGEAG  GAEGSDNPFVVG DTRYDE+PVGPIGEADDDPFEAPFYPFDDDGPPLNGRAFQ
Sbjct:  103 MQEAEARARRYVRDKLAGDGAGVAEFVAPPESPKAKAARGRAFGGERKPAPSARTGEGSGPGQTTPPAKVESQPXXXXXXXXXXDMCDEGEAGGGGAEGSDNPFVVGGDTRYDEAPVGPIGEADDDPFEAPFYPFDDDGPPLNGRAFQ 250
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12030.1734.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LD73_ECTSI1.670e-7284.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K5Z2_9PHAE6.800e-7080.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12030contigEcto-sp13_S_contig12030:2280..3328 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size438
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionProtein of unknown function DUF4336
Ec32 orthologEc-05_001540.1
Cds size429
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462638.9614158-UTR-Ecto-sp13_S_contig12030:2279..22881681462638.9614158-UTR-Ecto-sp13_S_contig12030:2279..2288Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12030 2280..2288 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462638.97197-CDS-Ecto-sp13_S_contig12030:2288..24031681462638.97197-CDS-Ecto-sp13_S_contig12030:2288..2403Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12030 2289..2403 -
1681462638.982258-CDS-Ecto-sp13_S_contig12030:3014..33281681462638.982258-CDS-Ecto-sp13_S_contig12030:3014..3328Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12030 3015..3328 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12030.1734.1prot_Ecto-sp13_S_contig12030.1734.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12030 2289..3328 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12030.1734.1

>prot_Ecto-sp13_S_contig12030.1734.1 ID=prot_Ecto-sp13_S_contig12030.1734.1|Name=mRNA_Ecto-sp13_S_contig12030.1734.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=143bp
MLEAEARARRYVRDKLAGDGAGAAEFVAPPELPKAARGQAFGGERKPAPP
GRTGEGLGPAQTTPLAKIESQRPAAAAGDVRDEGEAGATGAEGSDNPFVV
GLDTRYDESPVGPIGEADDDPFEAPFYPFDDDGPPLNGRAFQ*
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mRNA from alignment at Ecto-sp13_S_contig12030:2280..3328-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12030.1734.1 ID=mRNA_Ecto-sp13_S_contig12030.1734.1|Name=mRNA_Ecto-sp13_S_contig12030.1734.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1049bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12030:2280..3328- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGGAGGCGGAGGCCCGCGCGAGGAGATACGTGCGGGACAAGCTGGC
CGGAGACGGGGCGGGAGCGGCGGAGTTTGTCGCGCCACCGGAATTGCCGA
AAGCGGCAAGAGGTCAGGCCTTCGGAGGAGAGAGAAAACCGGCACCGCCG
GGAAGAACGGGGGAGGGCTTAGGGCCGGCACAAACGACGCCGCTGGCGAA
GATTGAGAGCCAACGACCGGCGGCGGCGGCGGGTGATGTGCGCGACGAGG
GCGAGGCCGGGGCAACAGGCGCGGAGGGCAGCGACAACCCTTTCGTGGTG
GGGCTTGATACCAGGTATGAGAGGTCCGCGGGGAGATATACAGCCGTTAC
ATCACACACCTGCTGCTGTTGTTGTGATTGATGTGGTTGTTGCTGATGTG
GTTGTTGTTGCTGGTGTTGTAGTCGTCGTGACGCGGAACTGTGGACGGTA
CCTCTTTTCTGTCTAGACTACTCTTCAAAGCCAGACTAACGTGGTCACAA
CCACAAGCAACAAACCATGGTAGAAACACATCGGCCTGGCTTAAAGTTGC
CACCGTGAGGACCCTCAATGGATCTTTCGGACAGAGAGAGAGAGACGCGC
GGCTCCCTTTCAACCTTCGGGTCTGGCCTACCCGGGTTCTTTCGACCTTC
GAGTATGGCCTACCCGGGTTCTTGACCAGCTTTCGGAGAGAGCACGCGAT
GCGGCACTACTATAGTTTCCTATGTTCAACTAGACGTCGCTCCGGCCATC
ACCTACCGTCGCCAAAACGTTTTTCATCATCTGCTATCCACCCCCGACGG
GGAAAATGGAGACGTACTGGGGTGTTCCACTGTCAATAATTCCACCGTGA
TGTCAACACACCCCTTATCACGTGCCTGTATCTTTCGTGCTTTGTGTCGT
TCTGTTTTGAAACGCCTAACTCAAGATACGACGAGTCTCCCGTGGGACCG
ATCGGAGAGGCGGACGATGACCCTTTCGAGGCGCCCTTCTACCCCTTCGA
CGATGACGGACCGCCTTTGAATGGTCGAGCCTTCCAGTAGTCGAACGTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12030:2280..3328-

>mRNA_Ecto-sp13_S_contig12030.1734.1 ID=mRNA_Ecto-sp13_S_contig12030.1734.1|Name=mRNA_Ecto-sp13_S_contig12030.1734.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=429bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12030:2280..3328- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGGAGGCGGAGGCCCGCGCGAGGAGATACGTGCGGGACAAGCTGGC
CGGAGACGGGGCGGGAGCGGCGGAGTTTGTCGCGCCACCGGAATTGCCGA
AAGCGGCAAGAGGTCAGGCCTTCGGAGGAGAGAGAAAACCGGCACCGCCG
GGAAGAACGGGGGAGGGCTTAGGGCCGGCACAAACGACGCCGCTGGCGAA
GATTGAGAGCCAACGACCGGCGGCGGCGGCGGGTGATGTGCGCGACGAGG
GCGAGGCCGGGGCAACAGGCGCGGAGGGCAGCGACAACCCTTTCGTGGTG
GGGCTTGATACCAGATACGACGAGTCTCCCGTGGGACCGATCGGAGAGGC
GGACGATGACCCTTTCGAGGCGCCCTTCTACCCCTTCGACGATGACGGAC
CGCCTTTGAATGGTCGAGCCTTCCAGTAG
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