mRNA_Ecto-sp13_S_contig12017.1725.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12017.1725.1
Unique NamemRNA_Ecto-sp13_S_contig12017.1725.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12017.1725.1 vs. uniprot
Match: D7FQG2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQG2_ECTSI)

HSP 1 Score: 182 bits (461), Expect = 1.450e-57
Identity = 96/103 (93.20%), Postives = 99/103 (96.12%), Query Frame = 1 
Query:    1 MKPVSLTFIASLLAAPAAAVEYMVTTCADLADVDDTQITGLTIDASTFACDEYTRFRVRNSMTLKATVSAVEFGNFSLKVLGELTVEPDVTFNGVVNQVGTGT 309
            MKPVSLTFIASLLA PAAAVEYMVTTCADLADVDDTQ+TGLTIDA+TFACDEYTRFRVRNSMTLKATVSAVEFGNFSLKVLGELTVEPDVTFNGVV+Q   GT
Sbjct:    1 MKPVSLTFIASLLATPAAAVEYMVTTCADLADVDDTQVTGLTIDANTFACDEYTRFRVRNSMTLKATVSAVEFGNFSLKVLGELTVEPDVTFNGVVDQSSEGT 103
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BLAST of mRNA_Ecto-sp13_S_contig12017.1725.1 vs. uniprot
Match: D8LJ44_ECTSI (Asn/thr-rich large protein family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ44_ECTSI)

HSP 1 Score: 169 bits (428), Expect = 3.430e-49
Identity = 90/102 (88.24%), Postives = 93/102 (91.18%), Query Frame = 1 
Query:    1 MKPVSLTFIASLLAAPAAAVEYMVTTCADLADVDDTQITGLTIDASTFACDEYTRFRVRNSMTLKATVSAVEFGNFSLKVLGELTVEPDVTFNGVVNQVGTG 306
            MKP SLT IA LLAAPAAAVEY V TCADLADVDDTQ+TGLTID STFACDEYTRF VRNSMTLKATV+AVEFGNFSLKVLGELTVEPDVTFNGVV+QV  G
Sbjct:    1 MKPCSLTLIAGLLAAPAAAVEYTVATCADLADVDDTQVTGLTIDTSTFACDEYTRFPVRNSMTLKATVAAVEFGNFSLKVLGELTVEPDVTFNGVVDQVKNG 102
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BLAST of mRNA_Ecto-sp13_S_contig12017.1725.1 vs. uniprot
Match: D7FLJ6_ECTSI (Asn/thr-rich large protein family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLJ6_ECTSI)

HSP 1 Score: 167 bits (423), Expect = 1.910e-48
Identity = 90/102 (88.24%), Postives = 93/102 (91.18%), Query Frame = 1 
Query:    1 MKPVSLTFIASLLAAPAAAVEYMVTTCADLADVDDTQITGLTIDASTFACDEYTRFRVRNSMTLKATVSAVEFGNFSLKVLGELTVEPDVTFNGVVNQVGTG 306
            MK VSLT IASLLAAPAAAVEY V TCADLADVDDTQ+T LTIDASTFACDEYTRFRVRN+MTLKATV AVEFGNFSLKVLGELTVEPDV FNGVV+QV  G
Sbjct:    1 MKTVSLTLIASLLAAPAAAVEYTVATCADLADVDDTQVTSLTIDASTFACDEYTRFRVRNAMTLKATVPAVEFGNFSLKVLGELTVEPDVMFNGVVDQVKNG 102
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12017.1725.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FQG2_ECTSI1.450e-5793.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LJ44_ECTSI3.430e-4988.24Asn/thr-rich large protein family protein n=1 Tax=... [more]
D7FLJ6_ECTSI1.910e-4888.24Asn/thr-rich large protein family protein n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12017contigEcto-sp13_S_contig12017:1532..1861 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size330
Hectar predicted targeting categorysignal peptide
Exons1
Cds size330
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462638.2549047-CDS-Ecto-sp13_S_contig12017:1531..18611681462638.2549047-CDS-Ecto-sp13_S_contig12017:1531..1861Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12017 1532..1861 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12017.1725.1prot_Ecto-sp13_S_contig12017.1725.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12017 1532..1861 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12017.1725.1

>prot_Ecto-sp13_S_contig12017.1725.1 ID=prot_Ecto-sp13_S_contig12017.1725.1|Name=mRNA_Ecto-sp13_S_contig12017.1725.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=110bp
MKPVSLTFIASLLAAPAAAVEYMVTTCADLADVDDTQITGLTIDASTFAC
DEYTRFRVRNSMTLKATVSAVEFGNFSLKVLGELTVEPDVTFNGVVNQVG
TGTAVVSVD*
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mRNA from alignment at Ecto-sp13_S_contig12017:1532..1861-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12017.1725.1 ID=mRNA_Ecto-sp13_S_contig12017.1725.1|Name=mRNA_Ecto-sp13_S_contig12017.1725.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=330bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12017:1532..1861- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGCCTGTCTCTCTCACGTTCATAGCCAGCCTTCTGGCAGCGCCAGC
TGCGGCGGTCGAGTATATGGTCACCACTTGTGCTGACCTTGCGGACGTCG
ACGATACCCAGATCACCGGCCTTACCATCGACGCTAGCACCTTCGCCTGC
GATGAATACACCCGCTTCCGTGTCCGCAACTCCATGACGCTCAAGGCGAC
AGTCTCCGCCGTGGAGTTCGGGAACTTCTCGCTGAAAGTTCTCGGAGAGC
TGACGGTCGAGCCCGACGTCACGTTCAACGGCGTCGTTAATCAGGTAGGC
ACTGGAACCGCAGTAGTATCAGTTGATTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12017:1532..1861-

>mRNA_Ecto-sp13_S_contig12017.1725.1 ID=mRNA_Ecto-sp13_S_contig12017.1725.1|Name=mRNA_Ecto-sp13_S_contig12017.1725.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=330bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12017:1532..1861- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGCCTGTCTCTCTCACGTTCATAGCCAGCCTTCTGGCAGCGCCAGC
TGCGGCGGTCGAGTATATGGTCACCACTTGTGCTGACCTTGCGGACGTCG
ACGATACCCAGATCACCGGCCTTACCATCGACGCTAGCACCTTCGCCTGC
GATGAATACACCCGCTTCCGTGTCCGCAACTCCATGACGCTCAAGGCGAC
AGTCTCCGCCGTGGAGTTCGGGAACTTCTCGCTGAAAGTTCTCGGAGAGC
TGACGGTCGAGCCCGACGTCACGTTCAACGGCGTCGTTAATCAGGTAGGC
ACTGGAACCGCAGTAGTATCAGTTGATTGA
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