mRNA_Ecto-sp13_S_contig12012.1723.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12012.1723.1
Unique NamemRNA_Ecto-sp13_S_contig12012.1723.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12012.1723.1 vs. uniprot
Match: A0A6H5KAA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAA0_9PHAE)

HSP 1 Score: 178 bits (452), Expect = 2.660e-47
Identity = 101/143 (70.63%), Postives = 114/143 (79.72%), Query Frame = 1 
Query:  364 MRPYPGAEDNTCAGDPATPKSDNSGKDEHDSPQAAVASTPSPQVTNESVGTSLGGSGGDHSPNLPLEPPQSGIELLGNKVSTELDGDSMSRDSSTGVVPATSRSLLSTPPAPLGHRAAIASASSPQAIHDSVGTSVGGSGRFP 792
            MRPYP A ++T AGDP TP+SD+SGKDE +  Q A+AS PSPQVT++SVGTS+GGSGGDHSP LPLEP QSG+ELLGN+V TELDG S S  SSTG VP  S +LLST P PLGH A IA+AS PQA  DSVG SVGGSGR P
Sbjct:    1 MRPYPVAGNDTSAGDPVTPESDDSGKDERNDHQPAIASAPSPQVTDDSVGTSVGGSGGDHSPKLPLEPSQSGVELLGNEVRTELDGGSTSHGSSTGDVPVASPALLSTSP-PLGHGAGIAAASPPQATDDSVGISVGGSGRVP 142
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BLAST of mRNA_Ecto-sp13_S_contig12012.1723.1 vs. uniprot
Match: D7FN11_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN11_ECTSI)

HSP 1 Score: 159 bits (403), Expect = 6.020e-43
Identity = 189/319 (59.25%), Postives = 205/319 (64.26%), Query Frame = 1 
Query:    1 TVLLSEGSEEEGAACQQRLEVVQLQKGDNIIGADDQ*VIDTVLP--PEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGG---------SEXXXXXXXXXXXXXXXXXXXXXXXXDAHDITKPLPMRPYPGAEDNTCAGDPATPKSDNSGKDEHDSPQAAVASTPSPQVTNESV-----GTSLGGSGGDHSPNLPLEPPQSGIELLGNKVSTELDGDSMSRDSSTGV---------------------------------------VPATSRSLLSTPPAPLGHRAAIASASSPQAIHDSVGTSVGGSGRFP 792
            T LLSE SEEEGAA QQRLEVVQLQKGDN+  AD++   DT+LP  PEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX             XXXXXXXXXXXXXXXXXXXXXXX D   I KPLPMRPYP A D+T AGDP TP+SD SGKDE +  Q A+AS PSPQVT++S      GTS+GGSG  H+P LP      G+E+LGN+  +ELD                                                   VP TS SLLST PAP GHRAAIA ASSPQA  DSVGTSVGGSGR P
Sbjct:   16 TALLSEDSEEEGAAHQQRLEVVQLQKGDNMDDADEEQSFDTILPGGPEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVVVEXXXXXXXXXXXXXXXXXXXXXXXXGDTDGIAKPLPMRPYPVAGDDTSAGDPVTPESDYSGKDERNDHQPAIASAPSPQVTDDSAADDPTGTSVGGSGRGHTPKLPST---GGMEMLGNEFPSELDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPVTSLSLLSTSPAPPGHRAAIAVASSPQATRDSVGTSVGGSGRVP 331
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12012.1723.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KAA0_9PHAE2.660e-4770.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FN11_ECTSI6.020e-4359.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12012contigEcto-sp13_S_contig12012:4047..5215 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size792
Hectar predicted targeting categoryother localisation
Exons3
Cds size600
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462638.102943-CDS-Ecto-sp13_S_contig12012:4046..42381681462638.102943-CDS-Ecto-sp13_S_contig12012:4046..4238Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12012 4047..4238 -
1681462638.1112788-CDS-Ecto-sp13_S_contig12012:4495..48551681462638.1112788-CDS-Ecto-sp13_S_contig12012:4495..4855Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12012 4496..4855 -
1681462638.1191235-CDS-Ecto-sp13_S_contig12012:4975..50231681462638.1191235-CDS-Ecto-sp13_S_contig12012:4975..5023Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12012 4976..5023 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462638.1271648-UTR-Ecto-sp13_S_contig12012:5023..52151681462638.1271648-UTR-Ecto-sp13_S_contig12012:5023..5215Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12012 5024..5215 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12012.1723.1prot_Ecto-sp13_S_contig12012.1723.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12012 4047..5023 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12012.1723.1

>prot_Ecto-sp13_S_contig12012.1723.1 ID=prot_Ecto-sp13_S_contig12012.1723.1|Name=mRNA_Ecto-sp13_S_contig12012.1723.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=200bp
MGDNIGGAGGEQDIDTILPGGSEEEEEEATQQQSLEAVQRQQGDNMGDAH
DITKPLPMRPYPGAEDNTCAGDPATPKSDNSGKDEHDSPQAAVASTPSPQ
VTNESVGTSLGGSGGDHSPNLPLEPPQSGIELLGNKVSTELDGDSMSRDS
STGVVPATSRSLLSTPPAPLGHRAAIASASSPQAIHDSVGTSVGGSGRFP
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mRNA from alignment at Ecto-sp13_S_contig12012:4047..5215-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12012.1723.1 ID=mRNA_Ecto-sp13_S_contig12012.1723.1|Name=mRNA_Ecto-sp13_S_contig12012.1723.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1169bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12012:4047..5215- (Ectocarpus species13 EcNAP12_S_4_19m)
ACGGTACTGCTGTCTGAGGGTTCTGAGGAGGAGGGGGCTGCATGCCAACA
GAGGCTAGAGGTAGTGCAACTGCAGAAGGGTGACAACATCATTGGCGCTG
ACGATCAGTAAGTAATTGATACGGTACTGCCTCCTGAGGAGGAGGAGGAG
GGGGCAGCATACCAGCAGAGATTGGAGGTGGCGCAACGGCAAATGGGTGA
CAACATCGGTGGCGCTGGCGGGGAGCAAGACATTGATACGGTACTGCTCT
CTGAGGGTTCTGAGGAGGAGGGGGTAGCGCACCAGCGGAGACTAGACGAA
GTGCAACCGCAACAGGGTGACAACATGGATGGCGCTGACGAGGAGCAATT
GTTTGAGAAGATATTGCCTGGGGGTTCTGAGGAGGAGGAGGAGGAGGCAA
CACAACAGCAGAGTCTAGAGGCAGTGCAACGGCAACAGGGTGACAACATG
GGTGACGCTCATGATATAACGAAACCGCTACCAATGAGGCCCTACCCTGG
AGCCGAAGATAACACCTGTGCCGGTGATCCTGCAACACCCAAGAGCGACA
ATAGCGGGAAGGATGAGCACGACAGTCCTCAGGCCGCCGTCGCTTCGACT
CCGTCCCCTCAGGTCACCAACGAGTCAGTGGGGACCAGTCTCGGCGGCAG
CGGTGGGGATCACTCCCCTAACCTTCCCCTGGAACCCCCGCAAAGTGGGA
TTGAGCTGCTCGGGAACAAGGTCTCAACGGAGCTTGACGGCGCACGGAGC
TTGACGGCGATTCCATGAGCCGCGACTCGTCGACCGGGGTCGTTCCGGCC
GCATCGCCTGCTCTACTCTCTACATCGCCTGCTCCGCTCGGTCATCAGGC
CGCCATCGCTTTGGTTTCGGCCCCTCAAGCTACCGACGACTTAGTAGGAA
CTAGGGTCGGCGGCAGAGGTGGGGGTCATACCACCAAGCTTCCCTCGCCA
AGCGGGATTGCGCTACTCGGGAGCAAGGTCTCAACGGAGCTTGACGGCGA
CTCCATGAGCCGCGACTCGTCGACAGGGGTCGTTCCGGCCACATCGCGTT
CTCTGCTCTCTACGCCGCCTGCTCCGCTCGGGCATCGCGCCGCTATCGCT
TCGGCTTCTTCCCCTCAGGCTATCCACGACTCAGTGGGGACCAGTGTCGG
CGGCAGCGGTAGGTTTCCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12012:4047..5215-

>mRNA_Ecto-sp13_S_contig12012.1723.1 ID=mRNA_Ecto-sp13_S_contig12012.1723.1|Name=mRNA_Ecto-sp13_S_contig12012.1723.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=600bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12012:4047..5215- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGTGACAACATCGGTGGCGCTGGCGGGGAGCAAGACATTGATACGAT
ATTGCCTGGGGGTTCTGAGGAGGAGGAGGAGGAGGCAACACAACAGCAGA
GTCTAGAGGCAGTGCAACGGCAACAGGGTGACAACATGGGTGACGCTCAT
GATATAACGAAACCGCTACCAATGAGGCCCTACCCTGGAGCCGAAGATAA
CACCTGTGCCGGTGATCCTGCAACACCCAAGAGCGACAATAGCGGGAAGG
ATGAGCACGACAGTCCTCAGGCCGCCGTCGCTTCGACTCCGTCCCCTCAG
GTCACCAACGAGTCAGTGGGGACCAGTCTCGGCGGCAGCGGTGGGGATCA
CTCCCCTAACCTTCCCCTGGAACCCCCGCAAAGTGGGATTGAGCTGCTCG
GGAACAAGGTCTCAACGGAGCTTGACGGCGACTCCATGAGCCGCGACTCG
TCGACAGGGGTCGTTCCGGCCACATCGCGTTCTCTGCTCTCTACGCCGCC
TGCTCCGCTCGGGCATCGCGCCGCTATCGCTTCGGCTTCTTCCCCTCAGG
CTATCCACGACTCAGTGGGGACCAGTGTCGGCGGCAGCGGTAGGTTTCCT
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