mRNA_Ecto-sp13_S_contig1200.1716.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1200.1716.1 vs. uniprot
Match: D8LI26_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI26_ECTSI) HSP 1 Score: 1130 bits (2924), Expect = 0.000e+0 Identity = 601/653 (92.04%), Postives = 614/653 (94.03%), Query Frame = 1
Query: 1 MSATRVMLVRCTLSMLLGAHAFVVPQPPCMISASDPQYRPVGLEKIGKPAPPFATFTSSSSSVDATFRDLARIVTAEVGDSMEQQHHDHQRCAMAVVYFSREDEASVQDPMCHVLHDDAGEIESALARLHDSLPFVDDVIASPARAASVSQKSEEQAARNEEPAAAVIATLALFHNPGLDARPFVLHPARELGLHGDRLLQEDEIGAYVGESLERSASRHSGGEEVSHGVEAGGNSGPRGHHRTMCLAFSGGGGGAVESEPSDLCTSTLHRLNGILGDAGRRESEAGSSSSSSRCPLVSTVVAAGYPAYVSVRDPGSRKRVTVAAEAVGAILTCLPVSEASLHLVHAGNDIALRGSQFRVVSVSGGDIAEVVPVESKQTEAATAVPTLDGGFAGGCGAGAGDSLWQRPRWPCGIISAAEWCKQVVSASTRFEKLAMQSALGVGVLERAGAREGAAALGQAGGAPTGVARNLPADGCLSVTEVKADESISLAHGGRGEQDDRRRGDGGSATAECGVRLGDLCDIRAIGVMAAMQAEQDAYSWLRIARLSALIQGATGDREASSATAAAAPVFQGCLTAGTRARCAPGAEAESCEELVRVAAGHGSLCPTAGMVGDAQLVSVDNVMMTCSHDVGMSSVYVCGSAGEQESSAASFV 1959
MSATRVMLVRCTLSMLLGAHAFVVPQPPCMISASDPQYRPVGLEKIGKPAPPFATFTSSSSSVDATFRDLARIV AEVGDSMEQQ QRCAMA+VYFSREDEAS+QDPM HVL DDAGEIE ALARLHDSLPFVDDVIASPARA +VSQK++ Q ARNEEPAAAV ATLALFHNPGLDARPFVL+PARELGLHGDRLLQEDEIGAYVGESLERSASR+ GGE+VS VEAGG+SGPRG+HRTMCLAFSGG GGAVESEPSD CTSTLHRLNGILGDAGRRES AGSSSSSSRCPLVSTV AAGYPAY SVRDP SRKRVTVAAEAVGAILTCLP SEASLHLVHAGNDIALRGSQFRV SV GGDIAEVVPVESKQTEAAT VPTLDGGFAGGCGAGAGDSLWQRPRWPCG+ISAAEWCKQVVSASTRFEKLA+QSALGVGVL+RAGAREGAAALGQAGG P GVARNLPA GCLSVTEVKADESISLA GRGEQDDRRRGDGGSA ECGVR GDLCDIRAIGVMAAMQAEQDAYSWLRIARLS LIQGATGDREASSATAAAAPVF GCLTAGTRARC PGAEAESCEELVRVAAGHGSLCPTAGMVGDAQLVSVDNVMMTCSH VGMSSVYVCG AGEQESSAAS V
Sbjct: 1 MSATRVMLVRCTLSMLLGAHAFVVPQPPCMISASDPQYRPVGLEKIGKPAPPFATFTSSSSSVDATFRDLARIVIAEVGDSMEQQQQ--QRCAMAIVYFSREDEASLQDPMRHVLQDDAGEIEIALARLHDSLPFVDDVIASPARATTVSQKNQNQGARNEEPAAAVTATLALFHNPGLDARPFVLNPARELGLHGDRLLQEDEIGAYVGESLERSASRYGGGEKVSQAVEAGGSSGPRGYHRTMCLAFSGGEGGAVESEPSDPCTSTLHRLNGILGDAGRRESGAGSSSSSSRCPLVSTVAAAGYPAYASVRDPDSRKRVTVAAEAVGAILTCLPDSEASLHLVHAGNDIALRGSQFRVASVWGGDIAEVVPVESKQTEAATGVPTLDGGFAGGCGAGAGDSLWQRPRWPCGVISAAEWCKQVVSASTRFEKLAIQSALGVGVLQRAGAREGAAALGQAGGTPAGVARNLPAHGCLSVTEVKADESISLARSGRGEQDDRRRGDGGSAGVECGVRPGDLCDIRAIGVMAAMQAEQDAYSWLRIARLSVLIQGATGDREASSATAAAAPVFHGCLTAGTRARCTPGAEAESCEELVRVAAGHGSLCPTAGMVGDAQLVSVDNVMMTCSHGVGMSSVYVCGVAGEQESSAASSV 651
BLAST of mRNA_Ecto-sp13_S_contig1200.1716.1 vs. uniprot
Match: A0A6H5KMN4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMN4_9PHAE) HSP 1 Score: 896 bits (2316), Expect = 0.000e+0 Identity = 474/511 (92.76%), Postives = 484/511 (94.72%), Query Frame = 1
Query: 439 ASVSQKSEEQAARNEEPAAAVI---ATLALFHNPGLDARPFVLHPARELGLHGDRLLQEDEIGAYVGESLERSASRHSGGEEVSHGVEAGGNSGPRGHHRTMCLAFSGGGGGAVESEPSDLCTSTLHRLNGILGDAGRRESEAGSSSSSS-RCPLVSTVVAAGYPAYVSVRDPGSRKRVTVAAEAVGAILTCLPVSEASLHLVHAGNDIALRGSQFRVVSVSGGDIAEVVPVESKQTEAATAVPTLDGGFAGGCGAGAGDSLWQRPRWPCGIISAAEWCKQVVSASTRFEKLAMQSALGVGVLERAGAREGAAALGQAGGAPTGVARNLPADGCLSVTEVKADESISLAHGGRGEQDDRRRGDGGSATAECGVRLGDLCDIRAIGVMAAMQAEQDAYSWLRIARLSALIQGATGDREASSATAAAAPVFQGCLTAGTRARCAPGAEAESCEELVRVAAGHGSLCPTAGMVGDAQLVSVDNVMMTCSHDVGMSSVYVCGSAGEQESSAASFV 1959
ASVSQK++EQ A NE+PAA + ATLA FHNPGLDARPFVLHPARELGLHGDRLLQEDEIGAYVGESLERSASRH GGEEVSHGVEAGG SG RGHHRTMCLAFSGGGGGAV SEPSDLCTSTLHRLNGILGDAGRR+S AGSSSSSS RCPLVSTV AAGYPAY SVRDPGSR+RVTVAAEAVGAILTCLP SEASLHLVHAGNDIALRGSQFRV SVSGGDIAEVVP+ESKQTEAATAVPTLDGGFAGGCGAGAGDSLWQRPRWPCG+ISAAEWCKQVVSASTRFEK AMQSALG+GVL+RAGAREGAAALGQAGGAP GVARNLPA G LSVTEVK DESISLAHGGRGEQDDRRRGDGG A AECGVRLGDLCDIRAIGVMAAMQAEQDAYSWLRIARLSALIQGATGDREASSATAAAAPVFQGCLTAGTRARCAPGAEAESCEELVRVAAGHGSLCPTAGMVGDAQLVSVDNVMMTCSH VGMSSVYVCG AGEQESSAASFV
Sbjct: 29 ASVSQKNQEQGAGNEKPAAVTVTVTATLAFFHNPGLDARPFVLHPARELGLHGDRLLQEDEIGAYVGESLERSASRHDGGEEVSHGVEAGGGSGARGHHRTMCLAFSGGGGGAVGSEPSDLCTSTLHRLNGILGDAGRRKSGAGSSSSSSSRCPLVSTVAAAGYPAYASVRDPGSRERVTVAAEAVGAILTCLPDSEASLHLVHAGNDIALRGSQFRVASVSGGDIAEVVPLESKQTEAATAVPTLDGGFAGGCGAGAGDSLWQRPRWPCGVISAAEWCKQVVSASTRFEKFAMQSALGIGVLQRAGAREGAAALGQAGGAPAGVARNLPAHGYLSVTEVKTDESISLAHGGRGEQDDRRRGDGGRAAAECGVRLGDLCDIRAIGVMAAMQAEQDAYSWLRIARLSALIQGATGDREASSATAAAAPVFQGCLTAGTRARCAPGAEAESCEELVRVAAGHGSLCPTAGMVGDAQLVSVDNVMMTCSHGVGMSSVYVCGGAGEQESSAASFV 539
BLAST of mRNA_Ecto-sp13_S_contig1200.1716.1 vs. uniprot
Match: A0A6H5KUX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUX6_9PHAE) HSP 1 Score: 234 bits (598), Expect = 1.370e-70 Identity = 124/146 (84.93%), Postives = 129/146 (88.36%), Query Frame = 1
Query: 1 MSATRVMLVRCTLSMLLGAHAFVVPQPPCMISASDPQYRPVGLEKIGKPAPPFATFTSSSSSVDATFRDLARIVTAEVGDSMEQQHHDHQR------CAMAVVYFSREDEASVQDPMCHVLHDDAGEIESALARLHDSLPFVDDVI 420
MS TRVMLVRCTLSMLLGAHAFVVPQP CMISASDPQYRPVGLEKIGKPAPPFATFTSSSSSVDATFRDLARIVTAEVGDSMEQ CA+AVVYFS+EDEAS+QDPMC VL DDAGEIESALARLHDSLPFVDD++
Sbjct: 1 MSVTRVMLVRCTLSMLLGAHAFVVPQPSCMISASDPQYRPVGLEKIGKPAPPFATFTSSSSSVDATFRDLARIVTAEVGDSMEQXXXXXXXXXXXXXCAIAVVYFSKEDEASLQDPMCRVLQDDAGEIESALARLHDSLPFVDDIV 146 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1200.1716.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1200.1716.1 >prot_Ecto-sp13_S_contig1200.1716.1 ID=prot_Ecto-sp13_S_contig1200.1716.1|Name=mRNA_Ecto-sp13_S_contig1200.1716.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=654bp MSATRVMLVRCTLSMLLGAHAFVVPQPPCMISASDPQYRPVGLEKIGKPAback to top mRNA from alignment at Ecto-sp13_S_contig1200:337..3928- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1200.1716.1 ID=mRNA_Ecto-sp13_S_contig1200.1716.1|Name=mRNA_Ecto-sp13_S_contig1200.1716.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3592bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1200:337..3928- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1200:337..3928- >mRNA_Ecto-sp13_S_contig1200.1716.1 ID=mRNA_Ecto-sp13_S_contig1200.1716.1|Name=mRNA_Ecto-sp13_S_contig1200.1716.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1962bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1200:337..3928- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |