mRNA_Ecto-sp13_S_contig12.1709.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12.1709.1
Unique NamemRNA_Ecto-sp13_S_contig12.1709.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12.1709.1 vs. uniprot
Match: D8LPL4_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPL4_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 4.750e-11
Identity = 39/97 (40.21%), Postives = 59/97 (60.82%), Query Frame = 1 
Query:   10 ASRRGRSSLVQLLLSERAIDINAASPDGWNSLMLASHGRHPRTVEVLIKGGASVSDGGGGDKDLTPLHVAAKVGDIVITTMLLRAGANVKATCAQTG 300
            A+  G    V  ++S  ++ IN  SP+GW  LMLA+ G + R V  L+  GA    G  GD+ +T LHV+A+ G +V++ ML+RAGA+V  +C  +G
Sbjct:   19 AANDGSFEQVFGIVSSGSVQINQGSPEGWTPLMLAADGGYSRIVSFLLHKGAIA--GIMGDEGVTALHVSARNGHVVVSLMLIRAGADVGLSCFTSG 113
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BLAST of mRNA_Ecto-sp13_S_contig12.1709.1 vs. uniprot
Match: A0A428UDF1_9HYPO (Uncharacterized protein n=1 Tax=Fusarium sp. AF-4 TaxID=1325735 RepID=A0A428UDF1_9HYPO)

HSP 1 Score: 57.0 bits (136), Expect = 3.690e-7
Identity = 35/93 (37.63%), Postives = 55/93 (59.14%), Query Frame = 1 
Query:   34 LVQLLLSERAIDINAASPDGWNSLMLASHGRHPRTVEVLIKGGASVSDGGGGDKDL---------TPLHVAAKVGDIVITTMLLRAGANVKAT 285
            +VQ LL E+  ++ A S DGW +L LA + + P  V +L++ GA V      +KD+         T LH AA++G  V+  +L++AGA+V+AT
Sbjct:    1 MVQRLL-EKGANVAAQSSDGWAALYLAVYYKQPEVVRLLLEHGADVDQK---NKDIDWRRPMGGVTALHAAAEIGSEVMARLLIKAGADVRAT 89
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12.1709.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LPL4_ECTSI4.750e-1140.21EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A428UDF1_9HYPO3.690e-737.63Uncharacterized protein n=1 Tax=Fusarium sp. AF-4 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12contigEcto-sp13_S_contig12:50027..50485 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score70.5
Seed ortholog evalue7.8e-10
Seed eggNOG ortholog2880.D8LPL4
Model size459
Hectar predicted targeting categorymitochondrion
Exons1
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Cds size459
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462637.0818422-CDS-Ecto-sp13_S_contig12:50026..504851681462637.0818422-CDS-Ecto-sp13_S_contig12:50026..50485Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12 50027..50485 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12.1709.1prot_Ecto-sp13_S_contig12.1709.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12 50027..50485 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12.1709.1

>prot_Ecto-sp13_S_contig12.1709.1 ID=prot_Ecto-sp13_S_contig12.1709.1|Name=mRNA_Ecto-sp13_S_contig12.1709.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=153bp
LLCASRRGRSSLVQLLLSERAIDINAASPDGWNSLMLASHGRHPRTVEVL
IKGGASVSDGGGGDKDLTPLHVAAKVGDIVITTMLLRAGANVKATCAQTG
CTPLHLASFVGYLRIMKLLLQFGADVDSRIANGGTALYISAESGQLEAVK
ILL
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mRNA from alignment at Ecto-sp13_S_contig12:50027..50485+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12.1709.1 ID=mRNA_Ecto-sp13_S_contig12.1709.1|Name=mRNA_Ecto-sp13_S_contig12.1709.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=459bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12:50027..50485+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTGCTTTGTGCATCCCGTCGGGGGCGCTCTAGCCTCGTCCAACTTTTACT
GTCGGAAAGAGCTATCGACATCAACGCAGCATCTCCGGATGGTTGGAATT
CGCTCATGTTGGCATCGCATGGGCGGCACCCCCGGACCGTTGAAGTTTTG
ATTAAAGGAGGGGCCTCCGTGTCAGACGGAGGCGGGGGCGATAAAGACCT
GACACCTTTACATGTAGCCGCAAAAGTTGGCGACATTGTTATTACGACGA
TGTTGCTACGTGCCGGGGCGAATGTTAAAGCCACCTGTGCTCAGACCGGG
TGCACGCCGCTACACCTGGCGTCGTTCGTGGGCTATCTACGCATCATGAA
ACTACTGCTACAGTTTGGTGCAGACGTCGATAGTCGCATCGCTAATGGTG
GGACAGCTCTGTATATTTCGGCCGAATCAGGGCAACTGGAAGCAGTCAAG
ATTCTACTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12:50027..50485+

>mRNA_Ecto-sp13_S_contig12.1709.1 ID=mRNA_Ecto-sp13_S_contig12.1709.1|Name=mRNA_Ecto-sp13_S_contig12.1709.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=459bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12:50027..50485+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTGCTTTGTGCATCCCGTCGGGGGCGCTCTAGCCTCGTCCAACTTTTACT
GTCGGAAAGAGCTATCGACATCAACGCAGCATCTCCGGATGGTTGGAATT
CGCTCATGTTGGCATCGCATGGGCGGCACCCCCGGACCGTTGAAGTTTTG
ATTAAAGGAGGGGCCTCCGTGTCAGACGGAGGCGGGGGCGATAAAGACCT
GACACCTTTACATGTAGCCGCAAAAGTTGGCGACATTGTTATTACGACGA
TGTTGCTACGTGCCGGGGCGAATGTTAAAGCCACCTGTGCTCAGACCGGG
TGCACGCCGCTACACCTGGCGTCGTTCGTGGGCTATCTACGCATCATGAA
ACTACTGCTACAGTTTGGTGCAGACGTCGATAGTCGCATCGCTAATGGTG
GGACAGCTCTGTATATTTCGGCCGAATCAGGGCAACTGGAAGCAGTCAAG
ATTCTACTC
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