mRNA_Ecto-sp13_S_contig11978.1685.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11978.1685.1
Unique NamemRNA_Ecto-sp13_S_contig11978.1685.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11978.1685.1 vs. uniprot
Match: D8LKW7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKW7_ECTSI)

HSP 1 Score: 229 bits (584), Expect = 2.950e-73
Identity = 132/213 (61.97%), Postives = 138/213 (64.79%), Query Frame = 2 
Query:   32 PLSSQITAH--RAAFT------R*TPHIHASPKPPSLQPRYQRIVLHRWILSAGSFYSTPPPA-----------------HGAGSSASAGSSADSPEQVPADRELQYLCPRTGCNTNLFLKENVPKDRAYYPACRNLSAGTCAWTGLLIKYPG*VCWLCASEFEVGEVVRAYTIADVERPACYIGWCLNAEACIVLKEDGVPVNVGLAGEDDV 595
            PLSSQ TAH  RAA T      + TP+IHASPKPPSLQ RYQRIVLHR ILSAG F     PA                 H     A          +  ADRE QYLCP TGCNTNL       KDRA YPACR  S GTC WTGLLIKYPG VCWLCASEFEVGEVV AYTI DVERPACYI WCLN +A I+LKE+GVPVN  LAGEDDV
Sbjct:   12 PLSSQSTAHTARAASTLFLSLGQKTPYIHASPKPPSLQRRYQRIVLHRRILSAGCFSGCFYPAARERSRLICECWLICCCHRRRRLA----------RAKADREPQYLCPGTGCNTNLH------KDRADYPACRTFSVGTCVWTGLLIKYPGNVCWLCASEFEVGEVVWAYTIPDVERPACYITWCLNGDAGIILKEEGVPVNARLAGEDDV 208
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BLAST of mRNA_Ecto-sp13_S_contig11978.1685.1 vs. uniprot
Match: A0A6H5KCU2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCU2_9PHAE)

HSP 1 Score: 229 bits (585), Expect = 2.970e-72
Identity = 105/118 (88.98%), Postives = 109/118 (92.37%), Query Frame = 2 
Query:  239 SPEQVPADRELQYLCPRTGCNTNLFLKENVPKDRAYYPACRNLSAGTCAWTGLLIKYPG*VCWLCASEFEVGEVVRAYTIADVERPACYIGWCLNAEACIVLKEDGVPVNVGLAGEDD 592
            SPEQVPADRELQYLCPRTGCNTNLFLKEN+ KDRA YPACRN +AGTCAWTGLLIKYPG VCWLCASEFEVGEVV A+TI DVERPAC+I WCLNAEACIVLK DGVPVNV LAGEDD
Sbjct:   52 SPEQVPADRELQYLCPRTGCNTNLFLKENIRKDRADYPACRNFNAGTCAWTGLLIKYPGKVCWLCASEFEVGEVVWAHTIPDVERPACHINWCLNAEACIVLKGDGVPVNVRLAGEDD 169
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BLAST of mRNA_Ecto-sp13_S_contig11978.1685.1 vs. uniprot
Match: D8LET1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LET1_ECTSI)

HSP 1 Score: 186 bits (471), Expect = 5.810e-56
Identity = 93/121 (76.86%), Postives = 98/121 (80.99%), Query Frame = 2 
Query:  239 SPEQVPADRELQYLCPRTGCNTNLFLKENVPKDRAYYPACRNLSAGTCAWTG--LLIKYPG*VCWLCASEFEVGEVVRAYTIADVERPACYIGWCLNAEACIVLKEDGVPVNVGLAGEDDV 595
            SPEQVPADRELQ+LCP TGCNTNLFLKEN+ KDRA Y  C    AGT A     LLIKYPG VCWLCASEFEVGEVV AYT  DVERPACYI WCLN +ACI+LKE+G PVNV LAGEDDV
Sbjct:   54 SPEQVPADRELQHLCPGTGCNTNLFLKENIHKDRADY--CTT-PAGTLAPVPARLLIKYPGKVCWLCASEFEVGEVVWAYTTPDVERPACYINWCLNEDACIILKEEGAPVNVRLAGEDDV 171
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BLAST of mRNA_Ecto-sp13_S_contig11978.1685.1 vs. uniprot
Match: D7FWQ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWQ2_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 2.600e-21
Identity = 64/131 (48.85%), Postives = 67/131 (51.15%), Query Frame = 2 
Query:   32 PLSSQITAHRAAFTR*TPHIHASPKPPSLQPRYQRIVLHRWILSAGSFYSTPPPAHGAGSSASAGSSAD------------------SPEQVPADRELQYLCPRTGCNTNLFLKENVPKDRAYYPACRNLS 370
            PLSSQIT H A     T H    P       RYQ IVLHR ILSAG F           S+AS                        S EQVPADRE QYLCP TGCNTNLFLKEN+ K RA YPACR L+
Sbjct:   12 PLSSQITTHTARAASNTVH----PCLAKAAKRYQHIVLHRRILSAGCF-----------SAASTXXXXXXXXXXXXXXXXXXXXXXGSAEQVPADRESQYLCPGTGCNTNLFLKENIHKGRADYPACRTLA 127
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11978.1685.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LKW7_ECTSI2.950e-7361.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KCU2_9PHAE2.970e-7288.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LET1_ECTSI5.810e-5676.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FWQ2_ECTSI2.600e-2148.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11978contigEcto-sp13_S_contig11978:907..2013 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size595
Hectar predicted targeting categoryother localisation
Exons2
Cds size441
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462634.9603193-CDS-Ecto-sp13_S_contig11978:906..13471681462634.9603193-CDS-Ecto-sp13_S_contig11978:906..1347Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11978 907..1347 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462634.968995-UTR-Ecto-sp13_S_contig11978:1347..13881681462634.968995-UTR-Ecto-sp13_S_contig11978:1347..1388Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11978 1348..1388 +
1681462634.9771361-UTR-Ecto-sp13_S_contig11978:1900..20131681462634.9771361-UTR-Ecto-sp13_S_contig11978:1900..2013Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11978 1901..2013 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11978.1685.1prot_Ecto-sp13_S_contig11978.1685.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11978 907..1347 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11978.1685.1

>prot_Ecto-sp13_S_contig11978.1685.1 ID=prot_Ecto-sp13_S_contig11978.1685.1|Name=mRNA_Ecto-sp13_S_contig11978.1685.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=147bp
MALLPSTPSTPPLITNHSSQSSFHPINTTHPCLAKAAKPPAPLPTHRPPP
LDPFRRQLLLYPAARARSRLICECWLICRLARASPGRPRAAIPLSTHRLQ
YQPLLKGKCPQRQGLLPSLQELERRHLRVDWPVDQVPRIGLLALRL*
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mRNA from alignment at Ecto-sp13_S_contig11978:907..2013+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11978.1685.1 ID=mRNA_Ecto-sp13_S_contig11978.1685.1|Name=mRNA_Ecto-sp13_S_contig11978.1685.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1107bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11978:907..2013+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTCTACTCCCATCTACTCCTTCTACACCCCCTCTCATCACAAATCA
CAGCTCACAGAGCAGCTTTCACCCGATAAACACCACACATCCATGCCTCG
CCAAAGCCGCCAAGCCTCCAGCCCCGCTACCAACGCATCGTCCTCCACCG
CTGGATCCTTTCCGCCGGCAGCTTCTACTCTACCCCGCCGCCCGCGCACG
GAGCCGGCTCATCTGCGAGTGCTGGCTCATCTGCCGACTCGCCCGAGCAA
GTCCCGGCCGACCGCGAGCTGCAATACCTCTGTCCACGCACCGGTTGCAA
TACCAACCTCTTCTTAAAGGAAAATGTCCCCAAAGACAGGGCCTACTACC
CAGCCTGCAGGAACTTGAGCGCCGGCACCTGCGCGTGGACTGGCCTGTTG
ATCAAGTACCCCGGATAGGTCTGCTGGCTCTGCGCCTCTGAGTTCGAGGT
CGGCGAAGTGGTGCGGGCATACACCATCGCAGGTGAGGGCTTTCGTATAT
CTACAGCAGTAGTATAATGAATGATCTTCCTTCACGGATGTAATCTGCGG
CAGCAGTCTTGGAGTTCGCGCGTTCATGTTCGTGGTTATTTGTATATATG
AACGTGATTCACATTGTTTGCCGACGCACATCATGTTCATATAAAATTGT
TTACACCACACAACATTCGGCGCTCTCATCATTTTTCGGCGCTCTTCTTC
GTGATTGGGTATGAATCATATGCCCACGTTGTAGGTACTAACACGATTCA
TTCCTGATTTCTGTCACAAGCAAACCACACAACAACCACCAAGCAACCTT
GCAATATTTTTTGCGTTGTGCTGTGTAGGGTTGTCGCACAAACTTTGCCC
CTCCCTGCGCTGTTGAATTACTCAGAAAATGAACAGATCTACTTCAACAA
AACGCTACAAAAAAAAGTTCTTCACTGACGAGTTTTCCGCCTGCATGTAT
GTATGTATGTATGTATGTCACCTTCTCTTTTTGTGATCAAACAGACGTTG
AACGCCCGGCATGCTACATTGGCTGGTGCCTCAACGCCGAGGCCTGCATC
GTCCTCAAGGAGGACGGCGTCCCCGTCAACGTTGGGCTGGCCGGCGAGGA
CGACGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11978:907..2013+

>mRNA_Ecto-sp13_S_contig11978.1685.1 ID=mRNA_Ecto-sp13_S_contig11978.1685.1|Name=mRNA_Ecto-sp13_S_contig11978.1685.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=441bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11978:907..2013+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTCTACTCCCATCTACTCCTTCTACACCCCCTCTCATCACAAATCA
CAGCTCACAGAGCAGCTTTCACCCGATAAACACCACACATCCATGCCTCG
CCAAAGCCGCCAAGCCTCCAGCCCCGCTACCAACGCATCGTCCTCCACCG
CTGGATCCTTTCCGCCGGCAGCTTCTACTCTACCCCGCCGCCCGCGCACG
GAGCCGGCTCATCTGCGAGTGCTGGCTCATCTGCCGACTCGCCCGAGCAA
GTCCCGGCCGACCGCGAGCTGCAATACCTCTGTCCACGCACCGGTTGCAA
TACCAACCTCTTCTTAAAGGAAAATGTCCCCAAAGACAGGGCCTACTACC
CAGCCTGCAGGAACTTGAGCGCCGGCACCTGCGCGTGGACTGGCCTGTTG
ATCAAGTACCCCGGATAGGTCTGCTGGCTCTGCGCCTCTGA
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