mRNA_Ecto-sp13_S_contig11931.1648.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11931.1648.1
Unique NamemRNA_Ecto-sp13_S_contig11931.1648.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11931.1648.1 vs. uniprot
Match: D8LE32_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE32_ECTSI)

HSP 1 Score: 142 bits (359), Expect = 2.400e-37
Identity = 66/69 (95.65%), Postives = 67/69 (97.10%), Query Frame = 1 
Query:   76 QLVVSVGKDSAHSVAVFHWQSRTTLFTAPSGPETVLGCHVVHENLFVSCGVDHLRLWTRVGGSFEVEKG 282
            +LVVSVGKDSAHSVAVFHWQSRTTLFTAPSGPE VLGCHVVHENLFVSCGVDHLRLWTRVGG FEVEKG
Sbjct:  161 KLVVSVGKDSAHSVAVFHWQSRTTLFTAPSGPEPVLGCHVVHENLFVSCGVDHLRLWTRVGGRFEVEKG 229
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BLAST of mRNA_Ecto-sp13_S_contig11931.1648.1 vs. uniprot
Match: UPI001CF151B3 (LOW QUALITY PROTEIN: echinoderm microtubule-associated protein-like 6 n=2 Tax=Acropora TaxID=6127 RepID=UPI001CF151B3)

HSP 1 Score: 79.7 bits (195), Expect = 3.290e-15
Identity = 39/100 (39.00%), Postives = 61/100 (61.00%), Query Frame = 1 
Query:    7 QVLSVFRGFHTEGVCQVCFSPDGQLVVSVGKDSAHSVAVFHWQSRTTLFTAPSGPETVLGCHVV--HENLFVSCGVDHLRLWTRVGGSFEVEKGERGYVS 300
            + LSV +GFHT+GVC V FS +G+L+V+VG D+ HS+AV+ W   + L ++    E +         ++ FV+CGV H++ WT  GG      G+RG ++
Sbjct: 1464 ETLSVIQGFHTKGVCAVSFSCNGKLLVTVGIDAGHSIAVWKWAEGSKLASSLGHTERIFVAEFRPDSDSQFVTCGVKHVKFWTLAGGQLV---GKRGVIN 1560
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BLAST of mRNA_Ecto-sp13_S_contig11931.1648.1 vs. uniprot
Match: UPI0009E5561A (echinoderm microtubule-associated protein-like 6 n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E5561A)

HSP 1 Score: 79.3 bits (194), Expect = 3.870e-15
Identity = 39/100 (39.00%), Postives = 62/100 (62.00%), Query Frame = 1 
Query:    7 QVLSVFRGFHTEGVCQVCFSPDGQLVVSVGKDSAHSVAVFHWQSRTTLFTAPSGPETVLGCHVV--HENLFVSCGVDHLRLWTRVGGSFEVEKGERGYVS 300
            + LSV +GFHT+GVC V FS +G+L+V+VG D+AHS+AV+ W   + L ++    E +         ++ FV+CGV H++ W+  GG      G+RG ++
Sbjct:  329 ETLSVIQGFHTKGVCAVNFSCNGKLLVTVGIDAAHSIAVWKWAEGSKLASSHGHTERIFVAEFRPDSDSQFVTCGVKHVKFWSLAGGQLV---GKRGVIT 425
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BLAST of mRNA_Ecto-sp13_S_contig11931.1648.1 vs. uniprot
Match: UPI0009E1F9A3 (echinoderm microtubule-associated protein-like 6 n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E1F9A3)

HSP 1 Score: 79.3 bits (194), Expect = 4.410e-15
Identity = 39/100 (39.00%), Postives = 62/100 (62.00%), Query Frame = 1 
Query:    7 QVLSVFRGFHTEGVCQVCFSPDGQLVVSVGKDSAHSVAVFHWQSRTTLFTAPSGPETVLGCHVV--HENLFVSCGVDHLRLWTRVGGSFEVEKGERGYVS 300
            + LSV +GFHT+GVC V FS +G+L+V+VG D+AHS+AV+ W   + L ++    E +         ++ FV+CGV H++ W+  GG      G+RG ++
Sbjct:  550 ETLSVIQGFHTKGVCAVNFSCNGKLLVTVGIDAAHSIAVWKWAEGSKLASSHGHTERIFVAEFRPDSDSQFVTCGVKHVKFWSLAGGQLV---GKRGVIT 646
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BLAST of mRNA_Ecto-sp13_S_contig11931.1648.1 vs. uniprot
Match: UPI0014258197 (echinoderm microtubule-associated protein-like 6 n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014258197)

HSP 1 Score: 79.3 bits (194), Expect = 4.490e-15
Identity = 35/96 (36.46%), Postives = 58/96 (60.42%), Query Frame = 1 
Query:    1 TPQVLSVFRGFHTEGVCQVCFSPDGQLVVSVGKDSAHSVAVFHWQSRTTLFTAPSGPETVLGCHVVHEN--LFVSCGVDHLRLWTRVGGSFEVEKG 282
            T + +S+ RGFHT+GVC + FS  G+L++SVG D  HS+A++ WQ  + + ++P   + +       ++   FVS GV H++ WT  GG    ++G
Sbjct: 1451 TKKTISILRGFHTKGVCSLNFSATGKLLISVGIDEDHSIAIWRWQDGSKVASSPGHSKRIFLAEFRPDSDTQFVSIGVKHVKFWTLAGGQLICKRG 1546
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BLAST of mRNA_Ecto-sp13_S_contig11931.1648.1 vs. uniprot
Match: UPI0009E5D2B7 (echinoderm microtubule-associated protein-like 6 n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E5D2B7)

HSP 1 Score: 79.3 bits (194), Expect = 4.510e-15
Identity = 39/100 (39.00%), Postives = 62/100 (62.00%), Query Frame = 1 
Query:    7 QVLSVFRGFHTEGVCQVCFSPDGQLVVSVGKDSAHSVAVFHWQSRTTLFTAPSGPETVLGCHVV--HENLFVSCGVDHLRLWTRVGGSFEVEKGERGYVS 300
            + LSV +GFHT+GVC V FS +G+L+V+VG D+AHS+AV+ W   + L ++    E +         ++ FV+CGV H++ W+  GG      G+RG ++
Sbjct: 1793 ETLSVIQGFHTKGVCAVNFSCNGKLLVTVGIDAAHSIAVWKWAEGSKLASSHGHTERIFVAEFRPDSDSQFVTCGVKHVKFWSLAGGQLV---GKRGVIT 1889
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BLAST of mRNA_Ecto-sp13_S_contig11931.1648.1 vs. uniprot
Match: B3SCP1_TRIAD (Uncharacterized protein n=2 Tax=Trichoplax TaxID=10227 RepID=B3SCP1_TRIAD)

HSP 1 Score: 77.0 bits (188), Expect = 2.910e-14
Identity = 39/97 (40.21%), Postives = 57/97 (58.76%), Query Frame = 1 
Query:    7 QVLSVFRGFHTEGVCQVCFSPDGQLVVSVGKDSAHSVAVFHWQSRTTLFTAPSGPETVLGCHVVHENL--FVSCGVDHLRLWTRVGGSFEVEKGERG 291
            + LS+ RGFH  G+C V FS  G+LV++VG D  HSVAV+ WQ  T + T+    E +L      ++   FV+ GV H++ WT  GG+   ++G  G
Sbjct: 1463 ETLSILRGFHKGGICAVNFSSSGKLVLTVGIDDNHSVAVWQWQDGTRVATSHDHNERILYAQFRPDSNSHFVTVGVKHVKFWTVAGGALLGKRGVFG 1559
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BLAST of mRNA_Ecto-sp13_S_contig11931.1648.1 vs. uniprot
Match: A0A8B8A0U1_ACAPL (echinoderm microtubule-associated protein-like 6 isoform X1 n=3 Tax=Valvatida TaxID=41166 RepID=A0A8B8A0U1_ACAPL)

HSP 1 Score: 75.1 bits (183), Expect = 1.380e-13
Identity = 40/96 (41.67%), Postives = 55/96 (57.29%), Query Frame = 1 
Query:    1 TPQVLSVFRGFHTEGVCQVCFSPDGQLVVSVGKDSAHSVAVFHWQSRTTLF-TAPSGPETVLG-CHVVHENLFVSCGVDHLRLWTRVGGSFEVEKG 282
            T Q LS+ +GFHT+GVC V FS  G+L+++VG D  HSVAV+ WQ  T +  T        LG      +  FV+ GV H++ WT  GG    ++G
Sbjct: 1450 TKQTLSIIKGFHTKGVCSVNFSATGKLLLTVGIDDNHSVAVWRWQQGTKVAGTIGHSKRIFLGEFRPDSDQEFVTVGVKHVKFWTVAGGELIGKRG 1545
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BLAST of mRNA_Ecto-sp13_S_contig11931.1648.1 vs. uniprot
Match: A0A8J1UMB4_OWEFU (Ofus.G151087 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1UMB4_OWEFU)

HSP 1 Score: 73.6 bits (179), Expect = 4.770e-13
Identity = 37/96 (38.54%), Postives = 55/96 (57.29%), Query Frame = 1 
Query:    1 TPQVLSVFRGFHTEGVCQVCFSPDGQLVVSVGKDSAHSVAVFHWQSRTTLFTAPSGPETVLGCHVV--HENLFVSCGVDHLRLWTRVGGSFEVEKG 282
            T + LSV RGFH +GVC V FS  G+L+++VG D  HS+AV+ WQ  + + +A      +         ++ FV+ GV H++ WT  GG    +KG
Sbjct: 1203 TKETLSVIRGFHKKGVCCVDFSCGGKLLLTVGIDDDHSLAVWRWQDGSKVCSAAGHTSRIFHAEFRPDSDSAFVTVGVKHVKFWTIAGGELIGKKG 1298
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BLAST of mRNA_Ecto-sp13_S_contig11931.1648.1 vs. uniprot
Match: UPI001455D3E9 (echinoderm microtubule-associated protein-like 6 n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI001455D3E9)

HSP 1 Score: 73.6 bits (179), Expect = 4.790e-13
Identity = 41/103 (39.81%), Postives = 59/103 (57.28%), Query Frame = 1 
Query:    1 TPQVLSVFRGFHTEGVCQVCFSPDGQLVVSVGKDSAHSVAVFHWQSRTTLFTAPSGPETV-LG-CHVVHENLFVSCGVDHLRLWTRVGGSFEVEKGERGYVSN 303
            T Q LS+ +GFHT+GVC V FS  G+L+++VG D  HSVAV+ WQ  T +  +    + + LG      +  FV+ GV H+  WT  GG      G RG +++
Sbjct: 1449 TKQTLSIIKGFHTKGVCSVNFSGSGKLLLTVGIDDNHSVAVWRWQQGTKVAGSIGHTKRIFLGEFRPDSDQEFVTVGVKHVTFWTVAGGQL---MGRRGLMNS 1548
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11931.1648.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LE32_ECTSI2.400e-3795.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
UPI001CF151B33.290e-1539.00LOW QUALITY PROTEIN: echinoderm microtubule-associ... [more]
UPI0009E5561A3.870e-1539.00echinoderm microtubule-associated protein-like 6 n... [more]
UPI0009E1F9A34.410e-1539.00echinoderm microtubule-associated protein-like 6 n... [more]
UPI00142581974.490e-1536.46echinoderm microtubule-associated protein-like 6 n... [more]
UPI0009E5D2B74.510e-1539.00echinoderm microtubule-associated protein-like 6 n... [more]
B3SCP1_TRIAD2.910e-1440.21Uncharacterized protein n=2 Tax=Trichoplax TaxID=1... [more]
A0A8B8A0U1_ACAPL1.380e-1341.67echinoderm microtubule-associated protein-like 6 i... [more]
A0A8J1UMB4_OWEFU4.770e-1338.54Ofus.G151087 protein n=1 Tax=Owenia fusiformis Tax... [more]
UPI001455D3E94.790e-1339.81echinoderm microtubule-associated protein-like 6 n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11931contigEcto-sp13_S_contig11931:1903..2453 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score143.3
Seed ortholog evalue6.4e-32
Seed eggNOG ortholog2880.D8LE32
Model size309
KEGG koko:K18595,ko:K18598
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.microtubule binding
EggNOG OGsCOG2319@1,KOG2106@2759
Cds size309
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462631.6459627-CDS-Ecto-sp13_S_contig11931:1902..21331681462631.6459627-CDS-Ecto-sp13_S_contig11931:1902..2133Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11931 1903..2133 -
1681462631.657706-CDS-Ecto-sp13_S_contig11931:2375..24531681462631.657706-CDS-Ecto-sp13_S_contig11931:2375..2453Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11931 2376..2453 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11931.1648.1prot_Ecto-sp13_S_contig11931.1648.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11931 1903..2453 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11931.1648.1

>prot_Ecto-sp13_S_contig11931.1648.1 ID=prot_Ecto-sp13_S_contig11931.1648.1|Name=mRNA_Ecto-sp13_S_contig11931.1648.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=103bp
TPQVLSVFRGFHTEGVCQVCFSPDGQLVVSVGKDSAHSVAVFHWQSRTTL
FTAPSGPETVLGCHVVHENLFVSCGVDHLRLWTRVGGSFEVEKGERGYVS
NH*
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mRNA from alignment at Ecto-sp13_S_contig11931:1903..2453-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11931.1648.1 ID=mRNA_Ecto-sp13_S_contig11931.1648.1|Name=mRNA_Ecto-sp13_S_contig11931.1648.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=551bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11931:1903..2453- (Ectocarpus species13 EcNAP12_S_4_19m)
ACGCCCCAGGTTTTGTCCGTTTTTCGAGGTTTTCACACGGAAGGGGTGTG
CCAGGTCTGCTTTTCACCGGATGGTCAGGTATGAATCGCGAAACGTGCGT
TGTTCTTTACGAGATCCAGCACATGCGGAGCGAGAGCGTCATGAAGCGTA
GATAAACGTAGTTTTTGCCGTGAGCAAAGAAACACGCGCGCTTACGTAAC
AGAGCAGGCTCTGCCGTAACGTGTTCGCCGGCCAAGGTGTCCCCTCTCCT
TACCCTGCGTGCTCTCTCATATCGGCTCCGATAACAACACGCTTGCGACG
TGCGCAAACCTACCACACAGCTAGTCGTCTCCGTGGGTAAAGATTCGGCG
CACTCGGTGGCCGTTTTTCACTGGCAATCTCGCACCACACTCTTCACGGC
GCCGTCCGGCCCCGAGACCGTCCTAGGCTGCCACGTTGTCCACGAAAACC
TGTTCGTGTCCTGCGGTGTAGACCACCTCCGGCTGTGGACTCGTGTCGGG
GGAAGCTTCGAGGTGGAAAAAGGTGAACGGGGGTATGTCAGTAATCACTG
A
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11931:1903..2453-

>mRNA_Ecto-sp13_S_contig11931.1648.1 ID=mRNA_Ecto-sp13_S_contig11931.1648.1|Name=mRNA_Ecto-sp13_S_contig11931.1648.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=309bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11931:1903..2453- (Ectocarpus species13 EcNAP12_S_4_19m)
ACGCCCCAGGTTTTGTCCGTTTTTCGAGGTTTTCACACGGAAGGGGTGTG
CCAGGTCTGCTTTTCACCGGATGGTCAGCTAGTCGTCTCCGTGGGTAAAG
ATTCGGCGCACTCGGTGGCCGTTTTTCACTGGCAATCTCGCACCACACTC
TTCACGGCGCCGTCCGGCCCCGAGACCGTCCTAGGCTGCCACGTTGTCCA
CGAAAACCTGTTCGTGTCCTGCGGTGTAGACCACCTCCGGCTGTGGACTC
GTGTCGGGGGAAGCTTCGAGGTGGAAAAAGGTGAACGGGGGTATGTCAGT
AATCACTGA
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