mRNA_Ecto-sp13_S_contig11929.1643.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11929.1643.1
Unique NamemRNA_Ecto-sp13_S_contig11929.1643.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11929.1643.1 vs. uniprot
Match: D7G1M4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1M4_ECTSI)

HSP 1 Score: 240 bits (612), Expect = 4.790e-71
Identity = 123/131 (93.89%), Postives = 125/131 (95.42%), Query Frame = 1 
Query:    7 ERDGGNDGVADIDQTIDRYDYLIAFPHTREQAARSGGRRRRSELSTVDDGEGSDDSDSDTGGFEAAKRITLTEVNDIWYSAVPGDEVTKTAAKASLAREWEARFRTPSDDSEEVSISQSEWVRLAREVIVN 399
            ERDGGNDGVADIDQTIDRYDYLIAFPH REQAAR+GGR RRSELS V DGEGSDDSDSDTGGFEAA+RITLTEVNDIWYSAVPGDEVTKTAAK SLAREWEARFRTPS DSEEVSISQSEWVRLAREVIVN
Sbjct:   92 ERDGGNDGVADIDQTIDRYDYLIAFPHPREQAARAGGRGRRSELSAVGDGEGSDDSDSDTGGFEAAQRITLTEVNDIWYSAVPGDEVTKTAAKESLAREWEARFRTPSADSEEVSISQSEWVRLAREVIVN 222
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BLAST of mRNA_Ecto-sp13_S_contig11929.1643.1 vs. uniprot
Match: A0A835YL56_9STRA (Calcium-activated chloride channel-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL56_9STRA)

HSP 1 Score: 102 bits (254), Expect = 1.120e-22
Identity = 61/122 (50.00%), Postives = 80/122 (65.57%), Query Frame = 1 
Query:   49 TIDRYDYLIAFPHTREQAARSGGRRRRSELSTVDDGEGSDDSDSDTGGFEAAKRITLTEVNDIWYSAVPGDEVTKTAAKASLAREWEARFRTPSD-----DSEEVSISQSEWVRLAREVIVN 399
            T+DRYDYLI FP+  E   +S  R      S  D G  +   D+D G  EA   ITL EV +IWYSAVPGDEV K  A+  L RE++ARFRTP++     +S E+++S++EW+RLAREVI+N
Sbjct:  829 TVDRYDYLIIFPNPAEDK-KSRYRDVEEACSAGDGGARTHAGDADAG--EAGTFITLGEVAEIWYSAVPGDEVAKHEAQDKLRREFDARFRTPAEFSNLEESREMTMSRNEWLRLAREVIIN 947
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11929.1643.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G1M4_ECTSI4.790e-7193.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YL56_9STRA1.120e-2250.00Calcium-activated chloride channel-domain-containi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11929contigEcto-sp13_S_contig11929:2441..4588 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score242.3
Seed ortholog evalue1.3e-61
Seed eggNOG ortholog2880.D7G1M4
Model size400
KEGG koko:K19327,ko:K19480,ko:K19497,ko:K19501
KEGG TC1.A.17.1,1.A.17.1.2,1.A.17.1.21,1.A.17.1.3
KEGG Pathwayko04740,map04740
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.intracellular chloride channel activity
EggNOG OGsKOG2514@1,KOG2514@2759
Ec32 ortholog descriptionAnoctamin
Ec32 orthologEc-26_000980.1
Cds size399
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04040
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462631.1719043-CDS-Ecto-sp13_S_contig11929:2440..25751681462631.1719043-CDS-Ecto-sp13_S_contig11929:2440..2575Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11929 2441..2575 +
1681462631.1834548-CDS-Ecto-sp13_S_contig11929:3314..34041681462631.1834548-CDS-Ecto-sp13_S_contig11929:3314..3404Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11929 3315..3404 +
1681462631.1964564-CDS-Ecto-sp13_S_contig11929:4008..41281681462631.1964564-CDS-Ecto-sp13_S_contig11929:4008..4128Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11929 4009..4128 +
1681462631.212709-CDS-Ecto-sp13_S_contig11929:4534..45881681462631.212709-CDS-Ecto-sp13_S_contig11929:4534..4588Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11929 4535..4588 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11929.1643.1prot_Ecto-sp13_S_contig11929.1643.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11929 2441..4588 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11929.1643.1

>prot_Ecto-sp13_S_contig11929.1643.1 ID=prot_Ecto-sp13_S_contig11929.1643.1|Name=mRNA_Ecto-sp13_S_contig11929.1643.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=133bp
GGERDGGNDGVADIDQTIDRYDYLIAFPHTREQAARSGGRRRRSELSTVD
DGEGSDDSDSDTGGFEAAKRITLTEVNDIWYSAVPGDEVTKTAAKASLAR
EWEARFRTPSDDSEEVSISQSEWVRLAREVIVN
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mRNA from alignment at Ecto-sp13_S_contig11929:2441..4588+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11929.1643.1 ID=mRNA_Ecto-sp13_S_contig11929.1643.1|Name=mRNA_Ecto-sp13_S_contig11929.1643.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2148bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11929:2441..4588+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGGTGAACGGGACGGGGGCAACGATGGAGTGGCCGACATTGACCAAAC
TATCGACCGCTATGACTACCTCATCGCCTTCCCACACACGCGGGAACAGG
CGGCTCGGTCGGGGGGTCGTAGGAGACGCAGCGAGGTGAGACAATAACAA
GGGTTTCCCCGCTGGTAGGTGGCTTGACACCAACGGATTTGGCGCGAGAA
TACTGCCATGGGGCGTTGACAAGCTCACGTTCTTTTCGTTGAAAGGCTTG
AGACCAACTGGATGACCGGCTCTTGGTGCACAAGTAAATACGCGCTGCAA
GGTGCAAATTGAAATCGACTCCAGGTCTTTGCCATGCAGCCCTAACGTGG
GATGTACCACGTGCTCAACGAAGGCGGTCTTGGGCGTGAGAAGACCTCGT
AAATCGCGGAGAAACTCGTACAGAAATATGCGCTAGAGCTTTCGTAGTTC
GAACGCGCCATCCGAAATCATAGCGAGATGGTGGTCATGATGGCACTCTC
ATGTTCACGGGCATATGCTTTTTTCTCCACAACGACAAAACCTCATGCCA
CGAAGACATCCCGCCATTCTCCAATACCCTTCATGTTGCGTCTACAAGTG
TGTTTGGCGCTCTGGTCCTTGCTTGTTATCGACGGTAGCTGTGAGGATCT
AAGGTAGTCAGAGAATGACAAGTGAGAGGAAACAGTCCGAGGTCATGTAC
TATAGCAAGATGCATGTGTATTTGGAGACACTCGGTCTTGACCAACGCAG
GGCAGGGTCTCGGGCGTCCGATCTACTCCAACGCGAATACTGTCATATGA
GTGATGACATCTGTTCTGCAATTCTTGATGACAATTGATCGTACGACACA
TCATCCGGCGCCGGATGCGGAAAGTTGTCGACGGTCGACGACGGAGAAGG
GAGTGACGACTCCGATAGCGACACCGGCGGGTTCGAAGCCGCCAAGCGCA
TCACCTTGACGGAGGTGCGTGCAGACAACGCTACCTAATGGAAAGGCTGC
AAAAGCTCCGCTTGTACGACATTGCGGGCGTGTGACGGCTTGTCATATCC
TTGTTCACCCGACAAGTCTTCCTCAGTGCCGGCCTTGGCGATGGATATCC
GGTATATGAGCACAAACACATGCAATATTGCCCTTCTCAATAGTCTCCTT
CTGAAGATTCCAACGTTGGGGAGAAGGTGGTTTCAATACCCAATCCGGGG
TGCGGGGCAATAGATCCTGCTGAAGTCGTTCCAAAGGATAAACACAGATA
GAAGCCGACTCCCTTAAGCCGATGCTGCGTCCTTTAATACCTTGCTCCAC
ACTGTCCTGGGCGTGTTGCGCATTGTGCTTTAACAGCAACAACTATTCTA
CAAGCGGGACAGTAACTAAACCACTTTGGAAGTACATACGACTTAAGTGT
CGAACGAGGCACCGTCTCAACCTCTAGGGCATGCCTGAAAGACATGCAAG
CAAGAGCGATGTGACTAGCTGAAGCACGTGGCAGCTGCTGAACGCAAAAT
AATACACGGACCAACCCATGGGACAATGAGATGGAAACGAATAAAACGCG
GCCGACAACGACAAACAGGTAAACGACATCTGGTACTCCGCCGTGCCCGG
GGACGAGGTGACCAAGACCGCGGCGAAGGCAAGCCTCGCCAGGGAGTGGG
AGGCAAGGTTCCGGACGCCAAGCGACGACTCCGAGGAGGTGGGAGATCGT
GCCAGTCAGGTCTTCGGGTCTGATGAGTCATTTCTTGTCCATGCTTGGTT
CGGCTTAAGACGATGGTTCCCGTGGTACGCCAGTGAACTGAGCGCATATT
TAAACGGTCAGGGTGTGGTTCCTACAGGTGTTGGAATTATTGTACTAACG
TTTGAGGGGGGGATCGTCTCGCCTAAAAGGTTTGTTGGCACCTGGGCTGA
GTACGCCAGGAGGAAGACAAGAGAACCCAAGAATGAACGTTTTCCTGGAA
ATTCCTTGACTTTGGGGTGCTCTCGTCAGCAAATCGAGGCAACTCTGCGA
AAAGAAGGCGCGCAGCCAACAAAGTACGGCAAAGAGTGTAGAACAAATCA
GAAAAGTATTGAACGACTTTTCCCCCTCCACTTATCACCCTTAGGTGTCC
ATATCTCAGTCGGAGTGGGTCAGACTGGCACGGGAAGTCATCGTCAAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11929:2441..4588+

>mRNA_Ecto-sp13_S_contig11929.1643.1 ID=mRNA_Ecto-sp13_S_contig11929.1643.1|Name=mRNA_Ecto-sp13_S_contig11929.1643.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=399bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11929:2441..4588+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGGTGAACGGGACGGGGGCAACGATGGAGTGGCCGACATTGACCAAAC
TATCGACCGCTATGACTACCTCATCGCCTTCCCACACACGCGGGAACAGG
CGGCTCGGTCGGGGGGTCGTAGGAGACGCAGCGAGTTGTCGACGGTCGAC
GACGGAGAAGGGAGTGACGACTCCGATAGCGACACCGGCGGGTTCGAAGC
CGCCAAGCGCATCACCTTGACGGAGGTAAACGACATCTGGTACTCCGCCG
TGCCCGGGGACGAGGTGACCAAGACCGCGGCGAAGGCAAGCCTCGCCAGG
GAGTGGGAGGCAAGGTTCCGGACGCCAAGCGACGACTCCGAGGAGGTGTC
CATATCTCAGTCGGAGTGGGTCAGACTGGCACGGGAAGTCATCGTCAAC
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