mRNA_Ecto-sp13_S_contig11911.1632.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11911.1632.1
Unique NamemRNA_Ecto-sp13_S_contig11911.1632.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11911.1632.1 vs. uniprot
Match: D7FIR2_ECTSI (TPH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIR2_ECTSI)

HSP 1 Score: 365 bits (937), Expect = 6.460e-123
Identity = 209/218 (95.87%), Postives = 211/218 (96.79%), Query Frame = 1 
Query:    1 MEKCRQQRDVLDRAARARKSLEAKRFNEKQAIRQQMIDKATRELEASRKAEDNKEEKEALQQXXXXXXXXXRKTKAREELRLQIDKSRAIQIRQRAEREEAQRAEDKEINAYFRQRTSEMDRLDKEEEAARLAREKQLRNSQKLQAREHNAKDRALQAYETVNHARTIAAQGDEDDRFKKIVHGYIDDFNAKGKSTYLLHRTLNHKNPDMFPAGNLNL 654
            MEKCRQQRDVLDRAARARKSLE KRFNEKQAIRQQMIDKATRELEASRKAEDNKEEKEALQ XXXXXX    KTKAREELRLQID+SRAIQIRQRAE+EEAQRAEDKEINAYFRQRTSEMDRLDKEEEAARLAREKQLRNSQKLQARE NAKDRALQAYETVNHARTIAAQGDEDDRFKKIVHGYIDDFNAKGKSTYLLHRTLNHKNPDMFPAGNLNL
Sbjct:  253 MEKCRQQRDVLDRAARARKSLETKRFNEKQAIRQQMIDKATRELEASRKAEDNKEEKEALQXXXXXXXAAANKTKAREELRLQIDRSRAIQIRQRAEKEEAQRAEDKEINAYFRQRTSEMDRLDKEEEAARLAREKQLRNSQKLQARERNAKDRALQAYETVNHARTIAAQGDEDDRFKKIVHGYIDDFNAKGKSTYLLHRTLNHKNPDMFPAGNLNL 470
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BLAST of mRNA_Ecto-sp13_S_contig11911.1632.1 vs. uniprot
Match: A0A6H5KEN4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEN4_9PHAE)

HSP 1 Score: 363 bits (931), Expect = 1.180e-121
Identity = 204/218 (93.58%), Postives = 208/218 (95.41%), Query Frame = 1 
Query:    1 MEKCRQQRDVLDRAARARKSLEAKRFNEKQAIRQQMIDKATRELEASRKAEDNKEEKEALQQXXXXXXXXXRKTKAREELRLQIDKSRAIQIRQRAEREEAQRAEDKEINAYFRQRTSEMDRLDKEEEAARLAREKQLRNSQKLQAREHNAKDRALQAYETVNHARTIAAQGDEDDRFKKIVHGYIDDFNAKGKSTYLLHRTLNHKNPDMFPAGNLNL 654
            MEKCR+QRDVLDRAARARKSLEAKRFNEKQAIRQQMIDKATRELEASRKAEDNKEE+EALQQ XX       KTKAREELRLQIDKSRAIQIRQRAE+EEAQRAEDKEINAYFRQRTSEMDRLDKEE AARLAREKQLRNSQKLQARE NAKDRALQAYETVNHARTIAAQGDEDDRFKKIVHGYIDDFNAKGKSTYLLHRTL+HKNPDMFPAGNLNL
Sbjct:  279 MEKCRKQRDVLDRAARARKSLEAKRFNEKQAIRQQMIDKATRELEASRKAEDNKEEREALQQRXXEDDAAASKTKAREELRLQIDKSRAIQIRQRAEKEEAQRAEDKEINAYFRQRTSEMDRLDKEEAAARLAREKQLRNSQKLQARERNAKDRALQAYETVNHARTIAAQGDEDDRFKKIVHGYIDDFNAKGKSTYLLHRTLSHKNPDMFPAGNLNL 496
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BLAST of mRNA_Ecto-sp13_S_contig11911.1632.1 vs. uniprot
Match: A0A835YVV5_9STRA (TPH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVV5_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 2.720e-16
Identity = 71/203 (34.98%), Postives = 100/203 (49.26%), Query Frame = 1 
Query:    1 MEKCRQQRDVLDRAARARKSLEAKRFNEKQAIRQQMIDKATRELEASRKAEDNKEEKEALQQXXXXXXXXXRKTKAREELRLQIDKSRAIQIRQRAEREEAQRAEDKEINAYFRQRTSEMDRLDKEEEAARLAREKQLRNSQKLQAREHNAKDRALQAYETVNHARTIAAQGDEDDRFKKIVHGYIDDFNAKGKSTYLLHRTL 609
            +++C ++R  L+  A ARK+LE  RF E+QA+RQ MID+AT EL       DN+EE+EA +Q         R+   R      I++SRA     RA      R E + I AY+RQ   E    ++ E A  L R   ++ SQ  Q RE   +       +   HAR  A   +E  RF      + D+  A G+STY+L R L
Sbjct:  245 LQRCEEERGALNALAAARKALEGLRFQERQAVRQAMIDRATAELLKRSADIDNREEREAKEQRAREDAEAERRRDMRTCEHAAIEESRAQARAARAAAAADARLEGERIKAYYRQCAEEAAHQEEAEAAEALRRNLAVKASQVEQRREARERKALEDERQAAQHARLAAVAEEEKRRFAAAAQVHADELQAHGRSTYMLRRAL 447
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11911.1632.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FIR2_ECTSI6.460e-12395.87TPH domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KEN4_9PHAE1.180e-12193.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YVV5_9STRA2.720e-1634.98TPH domain-containing protein n=1 Tax=Tribonema mi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11911contigEcto-sp13_S_contig11911:48..3955 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score367.9
Seed ortholog evalue3.4e-99
Seed eggNOG ortholog2880.D7FIR2
Model size657
Hectar predicted targeting categoryother localisation
Exons7
EggNOG free text desc.Trichohyalin-plectin-homology domain
EggNOG OGs2CIRV@1,2QWHX@2759
Cds size657
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11911.1632.1prot_Ecto-sp13_S_contig11911.1632.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11911 48..3955 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462630.0918758-CDS-Ecto-sp13_S_contig11911:47..1371681462630.0918758-CDS-Ecto-sp13_S_contig11911:47..137Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11911 48..137 +
1681462630.1043239-CDS-Ecto-sp13_S_contig11911:328..4121681462630.1043239-CDS-Ecto-sp13_S_contig11911:328..412Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11911 329..412 +
1681462630.1210341-CDS-Ecto-sp13_S_contig11911:1028..11171681462630.1210341-CDS-Ecto-sp13_S_contig11911:1028..1117Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11911 1029..1117 +
1681462630.1322713-CDS-Ecto-sp13_S_contig11911:1897..19911681462630.1322713-CDS-Ecto-sp13_S_contig11911:1897..1991Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11911 1898..1991 +
1681462630.143826-CDS-Ecto-sp13_S_contig11911:2502..25801681462630.143826-CDS-Ecto-sp13_S_contig11911:2502..2580Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11911 2503..2580 +
1681462630.1549015-CDS-Ecto-sp13_S_contig11911:3400..34951681462630.1549015-CDS-Ecto-sp13_S_contig11911:3400..3495Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11911 3401..3495 +
1681462630.1713648-CDS-Ecto-sp13_S_contig11911:3828..39551681462630.1713648-CDS-Ecto-sp13_S_contig11911:3828..3955Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11911 3829..3955 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11911.1632.1

>prot_Ecto-sp13_S_contig11911.1632.1 ID=prot_Ecto-sp13_S_contig11911.1632.1|Name=mRNA_Ecto-sp13_S_contig11911.1632.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=219bp
MEKCRQQRDVLDRAARARKSLEAKRFNEKQAIRQQMIDKATRELEASRKA
EDNKEEKEALQQRQKEDDAAARKTKAREELRLQIDKSRAIQIRQRAEREE
AQRAEDKEINAYFRQRTSEMDRLDKEEEAARLAREKQLRNSQKLQAREHN
AKDRALQAYETVNHARTIAAQGDEDDRFKKIVHGYIDDFNAKGKSTYLLH
RTLNHKNPDMFPAGNLNL*
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mRNA from alignment at Ecto-sp13_S_contig11911:48..3955+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11911.1632.1 ID=mRNA_Ecto-sp13_S_contig11911.1632.1|Name=mRNA_Ecto-sp13_S_contig11911.1632.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3908bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11911:48..3955+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGAAGTGCCGGCAGCAGCGGGACGTGCTGGACAGGGCGGCGAGGGC
TAGGAAGAGCCTGGAAGCCAAGCGGTTCAACGAGAAACAGGTGCCGACAG
ACTTGGCGTTTCGTCGTCGTCGTCGTCGTCGTTGTCGTTGATCTCATGCT
CTCTCTGCGCGTCGTTGAGGTCCCGCTCTTGACGCTAATGTAGCTGCTCC
AAACACGTCGTAAACCTATCAACAGCACACCGTTTGGATGCATCTTCACC
ACGCCCCCGAACGCGCTCGTCGTCCCGCCAGGCAATAAGGCAGCAGATGA
TCGACAAGGCCACAAGGGAGCTCGAAGCCAGCAGGAAGGCTGAGGACAAC
AAAGAAGAGAAAGAGGTAGGAACAGAGGTCACCGGCTTGCCGTGGTTCCC
AGAGGCTACTGTATCTCTGCCGGGAACCGTAGCCCTGGTTCCAGCGATCA
CGGACCCTTCCGCCAAAAAGTCGACCGTTAGACCCGAAACGGGCCTGAAA
ATATGCGTCTTACGATTTCTCCTGTCAGTACTCATGACTGTGCCGTGGGG
TGGCTGGCGCCAATGGATGTTGATCGCGTAGAGATGGAGAGGATACGGTG
GAAAATGAAAGCAACGGTATTGGGTTGAATCATGTCAACTCACCTTTCTT
TCCACCACTCTTTCAAAGTAACACCAAACGGTTTCGTCCACAGCGTAGTA
GAAGGGAATTTGTCGACCTTCAGCAAGGACGGGATGTTGAAGCTGCATAC
CTTACCGCGTTGTCTCACGGATATTTTTAGCGCTTTCGCCCCTGTCCCAC
GATATTTTGCAGTAGCGTGTTGTACTTGTGCCCTTGTTCCGACGGGCGGA
TGACCCTTTCAAGCTGCTTATCAGCTCTTGAATGGTCTGAACGATGAAGT
GCAGCAAGCAGAGAGGTCAATGCAGTATTCCATAATAACAACCGCGTGGG
ACATCGTCGATCGGGGCACTTGTTGTTACAGGCTCTCCAGCAGAGGCAAA
AGGAAGACGACGCGGCCGCCAGAAAGACCAAGGCCAGGGAAGAACTCCGC
CTTCAGATTGATAAGAGCAGGTAAGCGAGAGAGAAAAAAGTCGACTTGCA
AGGGAGCCAACCCCCTACGCTGCTTCAACCACCGCGTCGGAGAAAGACGT
GGTGGTGTGGCCGCATTTTCAGTCGCGCACGGGGGCGGGCATGCTTCCCA
CAAGCAAGCGCAAACCGCGCTACACCGCATGATGCAAGACAACGCTATTA
TTGTTGGAGGCACGTCGCGCTGCAGATTAGAACGCCGGTGTGGGCCTAAG
TCGTAGCAGGTGTTTGACGTAAGAAGTGAACGAATAAAACAACAACAGTT
TACAAACCGTGTTGGTTGCGATGTCCTATCCACAGGACAACGCATGAAAG
TATACGCGCACAATACTAAGTAATACCTACGGAGGTTGATAGATAGTCAG
ACACCGCTGTGTACCACGTGGTCTGATGCGAGGGCGTCCCGGCGTACACT
TGGGGGCCTCCTTTTCGAGGGAGAAAAGGGAACATGAACACCTTGCGAAT
TTCCGCCCGATCGCCGGCATCATCGCCTTTTTGTCGGAGATGTTCTCCCC
GTTGCCTGGCGTGTTCAGTGCTGCTCTGGCAAGCACACTGAGAACCCACC
GAACACGATGACTTGCACGTTGAACCCACGTACCGGCCAACATATACGGT
GATAATGAAGCACGACAACAACAGGAACGACGAGGCGACATGAACGATGA
ACTCATGTGAAAGCAATAACAACAACAACAGCAACAACAGCAATAACAAC
AACAACAACAATGATCGACAACAGTGCATGGCCGTGAATCAACGTGCCAG
GGCGATTCAGATCAGGCAGAGGGCGGAGAGAGAAGAAGCTCAGCGCGCTG
AGGACAAAGAGATCAATGCCTACTTCCGACAGAGAACCAGCGAGGTCAGT
GCAACAAAGAACCCTTTCACCAACCCCTCCATGTGACGTTCAGAGCCATT
GCCCATCCACGGTCGCCTCGAGTCCCGTGGGTTCAACACCCACCACCGAA
GCCCGCGTCTCAGCGAGAGTCTTCCTGCTTGATTCCAGGATCCAACCGTT
CCTGGGGTAAATAAACCCGGTTCTCGGTGTTTTCTCCCTAACACCCAGGC
AACACCGTCCACGTACGGCGTCACACGACAGTCATCACCACCTGCCACAC
CCTGCCGAGACAACCCAAACAGTTCAACGGAACGGATGTTTCCTCTTGGA
TCAACCAACATCATGGAAATTGGCTTCGTGTTTTGTGCGGGGGGCAGAAG
TCGAGCGTGTTGCACGGGCGTGTAGAGCGCGGTGTGAGTCCACTCCGTCG
CAGAGGCTGCCCGCGAGAACGGACGGCGTTCAACAATAGAACGGCAATAT
CAACTCCGAAACCTATGTCTTACCTTGGGCCAAAATGATCCCATCACACA
CACAGATGGATCGGCTGGACAAGGAGGAGGAGGCGGCTAGGCTGGCGCGC
GAGAAGCAATTGAGAAACTCTCAGAAGCTTCAGGTGACGGAATTTCTGGT
AAACGAGGGGAAGCTGAAACGTTGGTGCTGTCGTTAATGTTCCTTGTATT
GAGGTGTTGGCGCATGTTGATCATGTGGACTTCTCCCCTGGTCTGGTTTG
CGTTAATCCTATCCTCTTAGACGCATCGTTGAAACAAGCTCCGCCAAAAA
CTCTACACAGCCAGCCTGGATGACTTGCGACTGAAAAAGTTACCCAAGGC
TGCACGTGCAAGTCAAAAACGACCGAGAAGGGTTTGTTGAAGTTCGACAA
GCAATCGATGAATTCCACGTTTGAGTACCCTTTGGAGAATCAGACCAAGC
AGTGGTTCGGGATTTGTGCGTGTGAGAGTCGACGTTTCGTTTGGGCCGGC
ATAGCGCTGATGGTGATTGAACAAGATCGGCTTATTCTACGGTCAACATG
GGGAGAATCAGGGCAGCAAAGGGATTCCGCTTGGGATGGGAGTTACCGCG
TTGAGGGCTTTCCCCATGAGCACACGTCTCCGAGTTTCATAAGTTTCCAC
TTTGCCTCCGACACATTTACATCTGGACTAGGACGTCGAGTTTTGTTGGC
GTACGACGTACGTGCGAGCCTAACACCCCGAGCCTAACGGGGAGCAGATC
GGTGCCGGCATGTTGCAGAGACGTTCGTGATAAGCGGTTGTGTGCGATGG
TTGCCGGAACATTTACTTCCAACAGCTAGGACGGTGAATGTTTTCTTTTT
TGCCTCAAGCTCTGGACCGTGACCCGCCGGTGGTTGAGACTCCCACGGCA
AACGTCAACTGTTTTCGCCGTTCCGCGGATGCTTCGTCTCTCTCGTCGCG
CAGGCGAGAGAACACAATGCGAAGGACAGGGCGCTGCAGGCCTACGAGAC
CGTGAACCACGCCCGCACGATCGCCGCCCAAGGAGACGAGGACGACCGGT
AAGTATCAACCCTTGCGTGCTGGATAACTGGTTGACTCTGTTCTCGATCC
GTCTGTTGTTCTCGGCCGCAGATCTAGCCGCAATCACTCCTTGACCTCTC
CGTGATTTTCTTGCCTTCAGCTGGGTGCCTCATTTTCGAGAGTGACCGTA
CACAGAAGCCAGCGCCGACCAGCCCCCGTGACGTTTAAATAGAGGAGGCT
TCAATAACGATGGTTGTCCATGGTTGTACAACGTGGTGCACATACGCGGG
GGGAAATCGCCAGAAAGCACAAGGATCCCGCCGATCGCGGTTGCTGATTG
TCCTACCCTCATATGCATATCCCTCTTGCAGGTTCAAGAAGATCGTCCAC
GGCTACATCGACGACTTCAATGCGAAGGGGAAGTCGACCTACCTTTTGCA
CAGGACCCTCAACCACAAGAACCCGGACATGTTCCCCGCCGGAAACCTCA
ATCTCTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11911:48..3955+

>mRNA_Ecto-sp13_S_contig11911.1632.1 ID=mRNA_Ecto-sp13_S_contig11911.1632.1|Name=mRNA_Ecto-sp13_S_contig11911.1632.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=657bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11911:48..3955+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGAAGTGCCGGCAGCAGCGGGACGTGCTGGACAGGGCGGCGAGGGC
TAGGAAGAGCCTGGAAGCCAAGCGGTTCAACGAGAAACAGGCAATAAGGC
AGCAGATGATCGACAAGGCCACAAGGGAGCTCGAAGCCAGCAGGAAGGCT
GAGGACAACAAAGAAGAGAAAGAGGCTCTCCAGCAGAGGCAAAAGGAAGA
CGACGCGGCCGCCAGAAAGACCAAGGCCAGGGAAGAACTCCGCCTTCAGA
TTGATAAGAGCAGGGCGATTCAGATCAGGCAGAGGGCGGAGAGAGAAGAA
GCTCAGCGCGCTGAGGACAAAGAGATCAATGCCTACTTCCGACAGAGAAC
CAGCGAGATGGATCGGCTGGACAAGGAGGAGGAGGCGGCTAGGCTGGCGC
GCGAGAAGCAATTGAGAAACTCTCAGAAGCTTCAGGCGAGAGAACACAAT
GCGAAGGACAGGGCGCTGCAGGCCTACGAGACCGTGAACCACGCCCGCAC
GATCGCCGCCCAAGGAGACGAGGACGACCGGTTCAAGAAGATCGTCCACG
GCTACATCGACGACTTCAATGCGAAGGGGAAGTCGACCTACCTTTTGCAC
AGGACCCTCAACCACAAGAACCCGGACATGTTCCCCGCCGGAAACCTCAA
TCTCTAG
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