mRNA_Ecto-sp13_S_contig11906.1627.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11906.1627.1
Unique NamemRNA_Ecto-sp13_S_contig11906.1627.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11906.1627.1 vs. uniprot
Match: A0A6H5JM89_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM89_9PHAE)

HSP 1 Score: 322 bits (826), Expect = 9.370e-104
Identity = 208/245 (84.90%), Postives = 211/245 (86.12%), Query Frame = 1 
Query:    1 REGQPMEQEQPETPGEEDDGGSEPESVVQYPERPPNWMPYYFLTFCFFGRPSNSEDTDLAMKAGSGPSGDSRPRKKKKASLGSSSDGGSGSEGGASNPAANLGRAGVKQFVGAGEAQSRAQVKKAIAKDAAQQSAETIRREGLELAKQQAEISKSVAXXXXXXXXDVQRGRELSEQEAGRXXXXXXXXXXXXXXAQAKDDLKGELDCLDPDDEDNTARRAQIKRDLAKLYRTPVSKFTADAAISN 735
            REGQPMEQEQP+TPGEEDDGGSEPESVVQYPERPPNWMPYYFLTFCFFGRPSNSEDTDLAMKAGSGPSGDSRPRKKKKASLGSSSDGGSGSEGGAS+PAANLGRAGVKQFVGAGEAQSRAQV                             IS+SV XXXXXXXX VQRGRELSEQEAGRXXXXXXXXXXXXXX QAKDDLKGELD LDPDDEDNTARRAQIKRDLAKLYRTPVSKFTADAA SN
Sbjct:  288 REGQPMEQEQPKTPGEEDDGGSEPESVVQYPERPPNWMPYYFLTFCFFGRPSNSEDTDLAMKAGSGPSGDSRPRKKKKASLGSSSDGGSGSEGGASDPAANLGRAGVKQFVGAGEAQSRAQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISRSVXXXXXXXXXXVQRGRELSEQEAGRXXXXXXXXXXXXXXXQAKDDLKGELDRLDPDDEDNTARRAQIKRDLAKLYRTPVSKFTADAATSN 532
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BLAST of mRNA_Ecto-sp13_S_contig11906.1627.1 vs. uniprot
Match: A0A6H5KWS8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWS8_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 7.130e-8
Identity = 73/222 (32.88%), Postives = 100/222 (45.05%), Query Frame = 1 
Query:   88 YPERPPNWMPYYFLTFCFFGRPSNS-EDTDL-AMKAGSGPSGDSRPRKKKKASLGSSSDGGSGSEGG---------ASNPAANLGRAGVKQFVGAGEAQSRAQVKKAIAKDAAQQSAETIRREGLELAKQQAEISKSVAXXXXXXXXDVQRGRELSEQEAGRXXXXXXXXXXXXXXAQAKDDLKGELDCLDPDDEDNTARRAQIKRDLAKLYRTPVSKFTAD 720
            Y  RP NW     LTFCFFGRP+   EDT+L    A SGP   SR +K+                             NP   L    V+QFVGAGEAQSRA+VKKA  +   +QS +  R + L    +Q E++K +         +    R L E+EA R               QA +DL+G+L       E + A+  ++K  +  + + PV +FTAD
Sbjct:  202 YGPRPANWTHPLTLTFCFFGRPAGEHEDTELNTCAASSGPP--SRGKKRXXXXXXXXXXXXXXXXXXXXXXXXXXLTENP---LHAGAVRQFVGAGEAQSRAKVKKATQEVELRQSRDAARAQFLRQNTEQLEVAKEMRDAVKRVADNTTAQRALQEEEACRKRKK-----------QAIEDLEGDLQYC----ESHEAKAIKLK--IRAMRKMPVGQFTAD 401
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BLAST of mRNA_Ecto-sp13_S_contig11906.1627.1 vs. uniprot
Match: A0A6H5JU95_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU95_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 1.290e-7
Identity = 49/101 (48.51%), Postives = 60/101 (59.41%), Query Frame = 1 
Query:  121 YFLTFCFFGRPSNSEDTDL-AMKAGSGPSGDSRPRKKKKASLGSSSDGGSGSEGGASNPAANLGRAGVKQFVGAGEAQSRAQVKKAIAKDAAQQSAETIRR 420
            Y LT+C  GRPS+SED DL   +  SGP G    +K KK S  S+SDG SGSE   +    +L  + ++ F GAGE QSRAQVKK  A  AA  + E  RR
Sbjct:    4 YLLTYCLIGRPSSSEDPDLRTARKTSGPKGRGGKQKAKKGSP-STSDG-SGSETSGAYTDVDLSSSAIRMFAGAGEVQSRAQVKKEHAAVAAANAQEQARR 102
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BLAST of mRNA_Ecto-sp13_S_contig11906.1627.1 vs. uniprot
Match: A0A6H5K3M7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3M7_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 1.810e-6
Identity = 66/171 (38.60%), Postives = 84/171 (49.12%), Query Frame = 1 
Query:  121 YFLTFCFFGRPSNSEDTDL-AMKAGSGPSGDSRPRKKKKASLGSSSDGGSGSEGGASNPAANLGRAGVKQFVGAGEAQSRAQVKK---AIAKDAAQQSAETIRREGLELAKQQAEISKSVAXXXXXXXXDVQRGRELSEQEAGRXXXXXXXXXXXXXXAQAK-DDLKGELD 618
            Y LT+C  GRPS+SED DL   +  SGP G    +K K  S  S+SDG SGSE   +    +L  + ++ F GAGE QSRAQVKK   A+A   AQ+ A  +         QQA   K V          V R + L E+ A R               QAK DDL+G+L+
Sbjct:    4 YLLTYCLIGRPSSSEDPDLRTARKTSGPKGRGGKQKVKNGSP-STSDG-SGSETSGAYTDVDLSSSAIRMFAGAGEVQSRAQVKKEHAAVAAANAQEQAPRV---------QQAHTGKLVTAVEALSAAVVSR-QALDEEAAHRARWDYARLAK-----QAKIDDLRGKLE 157
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BLAST of mRNA_Ecto-sp13_S_contig11906.1627.1 vs. uniprot
Match: A0A6H5L481_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L481_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 2.090e-5
Identity = 74/239 (30.96%), Postives = 103/239 (43.10%), Query Frame = 1 
Query:   40 PGEEDDGGSEPESVVQYPERPPNWMPYYFLTFCFFGRPSNSEDTDLAM-KAGSGPSGDSRPRKKKKA------------SLGSSSD--GGSGSEGGASNPAANLGRAGVKQFVGAGEAQSRAQVKKAIAKDAAQQSAETIRREGLELAKQQAEISKSVAXXXXXXXXDVQRGRELSEQEAGRXXXXXXXXXXXXXXAQAKDDLKGELDCLDPDDEDNTARRAQIKRDLAKLYRTPVSKF 711
            P E++  G + E    YP RP  WM    L +CF GRPS+SED DLA  +  SGP      RK                S G S    GG GS+G       NL    ++ F GAGE QSRAQV+K  A+  ++ + E  R++ L    Q  +  K++A         V   R L E+ A R               +  ++++G L+  + D       RA IK     +Y  P+S F
Sbjct:  243 PSEDEQAGDDGE----YPPRPDGWMHPLLLIYCFIGRPSDSEDPDLATARKTSGPPKRGSKRKSXXXXXXXXXXXXXXXSTGESETEPGGVGSDG-------NLTSTAIRTFAGAGEPQSRAQVQKQQAEVKSKAANEAFRQKRLAQGDQITKAVKTLAD-------SVAARRVLDEEAAVRARETAAESRKQ----RKVNNMRGLLEFSEVDSAQYYELRAAIKA----VYHQPLSDF 455
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11906.1627.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JM89_9PHAE9.370e-10484.90Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KWS8_9PHAE7.130e-832.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU95_9PHAE1.290e-748.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3M7_9PHAE1.810e-638.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L481_9PHAE2.090e-530.96Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11906contigEcto-sp13_S_contig11906:3919..4653 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size736
Hectar predicted targeting categoryother localisation
Exons1
Cds size720
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462629.6214502-UTR-Ecto-sp13_S_contig11906:3918..39331681462629.6214502-UTR-Ecto-sp13_S_contig11906:3918..3933Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11906 3919..3933 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462629.6299582-CDS-Ecto-sp13_S_contig11906:3933..46531681462629.6299582-CDS-Ecto-sp13_S_contig11906:3933..4653Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11906 3934..4653 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11906.1627.1prot_Ecto-sp13_S_contig11906.1627.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11906 3934..4653 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11906.1627.1

>prot_Ecto-sp13_S_contig11906.1627.1 ID=prot_Ecto-sp13_S_contig11906.1627.1|Name=mRNA_Ecto-sp13_S_contig11906.1627.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=240bp
MEQEQPETPGEEDDGGSEPESVVQYPERPPNWMPYYFLTFCFFGRPSNSE
DTDLAMKAGSGPSGDSRPRKKKKASLGSSSDGGSGSEGGASNPAANLGRA
GVKQFVGAGEAQSRAQVKKAIAKDAAQQSAETIRREGLELAKQQAEISKS
VAKAVAQVAADVQRGRELSEQEAGRKRKLEEEEACRKRKAQAKDDLKGEL
DCLDPDDEDNTARRAQIKRDLAKLYRTPVSKFTADAAISN
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mRNA from alignment at Ecto-sp13_S_contig11906:3919..4653+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11906.1627.1 ID=mRNA_Ecto-sp13_S_contig11906.1627.1|Name=mRNA_Ecto-sp13_S_contig11906.1627.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=735bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11906:3919..4653+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGGGAAGGGCAGCCGATGGAACAGGAGCAGCCGGAAACCCCAGGAGAAGA
AGACGACGGCGGCTCTGAACCGGAGTCAGTCGTCCAATATCCCGAGAGGC
CTCCCAATTGGATGCCCTACTATTTTCTCACTTTTTGCTTCTTTGGTAGG
CCCAGCAACAGCGAGGACACGGACCTTGCAATGAAAGCTGGATCTGGCCC
CTCTGGAGATTCTCGTCCGCGGAAGAAAAAGAAAGCTTCTTTGGGCTCGT
CCAGCGACGGGGGGAGTGGGAGCGAGGGGGGTGCATCGAACCCCGCCGCG
AACTTGGGCAGGGCCGGCGTTAAGCAGTTCGTCGGTGCCGGGGAGGCGCA
GAGTCGGGCCCAGGTTAAAAAGGCAATAGCAAAGGACGCAGCCCAACAGT
CGGCGGAGACCATACGAAGAGAGGGACTGGAGTTGGCAAAGCAGCAGGCC
GAGATATCGAAGTCTGTGGCTAAAGCAGTGGCGCAGGTGGCTGCCGATGT
GCAAAGAGGCAGGGAGCTGAGCGAACAGGAGGCTGGCCGCAAGCGCAAGC
TGGAAGAAGAGGAAGCATGCCGGAAGCGCAAGGCTCAAGCGAAGGACGAT
TTGAAAGGCGAACTAGACTGTCTCGATCCAGACGACGAGGACAACACCGC
ACGGCGCGCGCAAATCAAGCGGGATCTTGCTAAGCTGTACAGAACCCCTG
TCAGCAAATTTACTGCTGATGCTGCCATCTCCAAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11906:3919..4653+

>mRNA_Ecto-sp13_S_contig11906.1627.1 ID=mRNA_Ecto-sp13_S_contig11906.1627.1|Name=mRNA_Ecto-sp13_S_contig11906.1627.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=720bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11906:3919..4653+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAACAGGAGCAGCCGGAAACCCCAGGAGAAGAAGACGACGGCGGCTC
TGAACCGGAGTCAGTCGTCCAATATCCCGAGAGGCCTCCCAATTGGATGC
CCTACTATTTTCTCACTTTTTGCTTCTTTGGTAGGCCCAGCAACAGCGAG
GACACGGACCTTGCAATGAAAGCTGGATCTGGCCCCTCTGGAGATTCTCG
TCCGCGGAAGAAAAAGAAAGCTTCTTTGGGCTCGTCCAGCGACGGGGGGA
GTGGGAGCGAGGGGGGTGCATCGAACCCCGCCGCGAACTTGGGCAGGGCC
GGCGTTAAGCAGTTCGTCGGTGCCGGGGAGGCGCAGAGTCGGGCCCAGGT
TAAAAAGGCAATAGCAAAGGACGCAGCCCAACAGTCGGCGGAGACCATAC
GAAGAGAGGGACTGGAGTTGGCAAAGCAGCAGGCCGAGATATCGAAGTCT
GTGGCTAAAGCAGTGGCGCAGGTGGCTGCCGATGTGCAAAGAGGCAGGGA
GCTGAGCGAACAGGAGGCTGGCCGCAAGCGCAAGCTGGAAGAAGAGGAAG
CATGCCGGAAGCGCAAGGCTCAAGCGAAGGACGATTTGAAAGGCGAACTA
GACTGTCTCGATCCAGACGACGAGGACAACACCGCACGGCGCGCGCAAAT
CAAGCGGGATCTTGCTAAGCTGTACAGAACCCCTGTCAGCAAATTTACTG
CTGATGCTGCCATCTCCAAC
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