mRNA_Ecto-sp13_S_contig119.1617.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig119.1617.1
Unique NamemRNA_Ecto-sp13_S_contig119.1617.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig119.1617.1 vs. uniprot
Match: A0A6H5JNQ0_9PHAE (KIX_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNQ0_9PHAE)

HSP 1 Score: 138 bits (347), Expect = 1.210e-35
Identity = 75/81 (92.59%), Postives = 75/81 (92.59%), Query Frame = 3 
Query:   72 MAANGSELFLDRATRVRKIQQIAAFLAQIEGKDPQDRSLHGLAQKFENQIFTAAMNVEDYNNRINKKLSKVQKVRHQQAMQ 314
            MAANGSELFLDR TRVRKIQQIA FLAQIEGKDPQDRSLHGLAQKFENQIFTAAMNVEDYN RINKKLSKV   RHQQAMQ
Sbjct:    1 MAANGSELFLDRNTRVRKIQQIATFLAQIEGKDPQDRSLHGLAQKFENQIFTAAMNVEDYNTRINKKLSKV---RHQQAMQ 78
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BLAST of mRNA_Ecto-sp13_S_contig119.1617.1 vs. uniprot
Match: A0A836CHY1_9STRA (KIX_2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHY1_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.720e-11
Identity = 41/73 (56.16%), Postives = 52/73 (71.23%), Query Frame = 3 
Query:   78 ANGSEL-FLDRATRVRKIQQIAAFLAQIEGKDPQDRSLHGLAQKFENQIFTAAMNVEDYNNRINKKLSKVQKV 293
            A GS+L  +DR    R   QIA FLA +EGKD  D SLH LA +FENQIF+ A++ +DY  RINKKLS+V+K+
Sbjct:    5 AAGSDLQHVDRHACTR---QIAEFLANLEGKDKNDASLHELAGRFENQIFSVAVDFKDYQERINKKLSRVRKL 74
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig119.1617.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JNQ0_9PHAE1.210e-3592.59KIX_2 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A836CHY1_9STRA1.720e-1156.16KIX_2 domain-containing protein n=1 Tax=Tribonema ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig119contigEcto-sp13_S_contig119:24996..26878 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size328
Hectar predicted targeting categoryother localisation
Exons3
Cds size255
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462628.4501843-UTR-Ecto-sp13_S_contig119:24995..250661681462628.4501843-UTR-Ecto-sp13_S_contig119:24995..25066Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig119 24996..25066 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462628.458168-CDS-Ecto-sp13_S_contig119:25066..251711681462628.458168-CDS-Ecto-sp13_S_contig119:25066..25171Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig119 25067..25171 +
1681462628.4662948-CDS-Ecto-sp13_S_contig119:26215..263291681462628.4662948-CDS-Ecto-sp13_S_contig119:26215..26329Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig119 26216..26329 +
1681462628.4813669-CDS-Ecto-sp13_S_contig119:26842..268781681462628.4813669-CDS-Ecto-sp13_S_contig119:26842..26878Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig119 26843..26878 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig119.1617.1prot_Ecto-sp13_S_contig119.1617.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig119 25067..26878 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig119.1617.1

>prot_Ecto-sp13_S_contig119.1617.1 ID=prot_Ecto-sp13_S_contig119.1617.1|Name=mRNA_Ecto-sp13_S_contig119.1617.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=85bp
MAANGSELFLDRATRVRKIQQIAAFLAQIEGKDPQDRSLHGLAQKFENQI
FTAAMNVEDYNNRINKKLSKVQKVRHQQAMQQQQQ
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mRNA from alignment at Ecto-sp13_S_contig119:24996..26878+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig119.1617.1 ID=mRNA_Ecto-sp13_S_contig119.1617.1|Name=mRNA_Ecto-sp13_S_contig119.1617.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1883bp|location=Sequence derived from alignment at Ecto-sp13_S_contig119:24996..26878+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGACAGTGTCAGGCGCGCACAGCGAGACAGCACTTCGCCCCGTCTTTTTG
TTGTTGAAACAAAATTGAAACATGGCGGCGAATGGGAGTGAGCTGTTCCT
CGATAGGGCCACTCGCGTGCGCAAGATTCAGCAGATCGCGGCGTTCCTGG
CTCAGATAGAGGGGAAGGACCCGCAGGTAGGGGACGCGAGAATACCAAGA
GCGAGATGGCCAGGGTGCTCACAAGTGTTTCGGGTACCTTGCAGGGCAAT
GATTCATTTGTGTGTGTTTGCGTTTTTTGCAGCACGGGCAGCAGCTGTGG
GCATTTTTTGTTGTTGGGGGGTTCTGTCTCGCTCCGCCGCCTCTCGGAAT
GTAACTTCTAGATGTTTCGGTTTGCGGGTCAAAGTACGCCCCCCCCCCCT
CGCAAGCGCCTAGAACGTGGGCGAGTATCTCTCGCAAGTCTCCCCGGGGC
GCAGAGCGCCGCAGTTTCATGTGCCGAGCGGTCGCCCTTGAGTTGCGTCC
GTAATGAAACAGCCCGTCTGTCTTCTATTCTGCAGCACTCGATGCAGCTG
GCCTTTCGCATTTTTTTTTCGGTGGAGAGAGGTGCGGGTGGAGTTTTTTT
GTTGTGGGAGCGCCCACGCCCAGTCTTGTTTTTGGTTTGCCATCTCCTCG
TGACGTGGCCGTGGGCCGCTACACACGAGTGCACAGCTTCATCGCCAACC
TATTGTGCCAGAGCTCAGGGTTTCAGCGAGTAAGTTAACACAGCGCGGGG
GGGTGGCGAGAGCAGCGGGATTAGAACGGTCGATCGTTCCCGCCTCTTGT
GTGTCGTGTTGAACCGACGATTTATTTTTTACGCGGAATGGTTTTCCATG
AGATCGTTCTCTACCACGAGACACGTTCGTATCAGGTGGTTTGCGTTCAT
ACATCACCCACAGGGTTGTTCCGCCCCTCCATCTCCTTTTTTGTCCTCTC
ACGTGGTTGTATGCGTGTGTGTGGTTACGGATAGACACGTTTGGCATCAT
CCCTGTGCTTGATCTCCGTTGGTTGGACTCGTGAGCTCTTGTCCATCGTT
ACACCCTCCTCCTGCTGTGCGCTTCGCGGCTCCACGTGGTGTTTGCCTCT
CGTGTAATCCGCCCTTTTGGATGTACCTGCTCTATTCGCACTGGGTACTT
GAACTCATAAATGCCATTACAAAAAAATATGTCGCCGTTTTCCGTCGGCC
GAACTGCTCTGCTGGAGCAGGATCGGAGCCTGCATGGCCTTGCCCAGAAG
TTCGAGAACCAGATATTCACAGCGGCGATGAACGTGGAGGACTACAACAA
CCGCATCAACAAGAAGCTGAGCAAGGTCCAGAAGGTGAGTGTGTGTTGTT
GGGCACTAATTTAAGTAGAACGCTGTATCACGTCCGCCTTTGTCACGAAG
CCGTCAACCGCCGTTCAATGTCCCACTGTTGTCGATGGAAAGCCCCGGTT
GCCGACGGGGAATTTTTTTTCTGTTCCGTGTTGTATACGGCACGATGAAC
AGCGAGCTGTGGTTGGATGGTTTTTGCTCACATCAAGAATATCGTACAAG
GCTCCTGTATGCCATGCAAAGTACACCGTGTCCACTCTGTAGATCCTGTG
AAGACGTGGAACATGATCTGTCCCGAGCCATCTCTTGATGGTCATGTGAT
CGTCACACCGGCCCTGGGCCGGCGGCCGCTCTCCCTCTTTTCGCATGTTC
ATCCTGCGGGCGCGTTACGTTTGCAGCTGGGAGGGTACGTCGCTGGTGTA
AATGCGTACAGCAGTAGTGTTTTTTGTGCACGACAAGCTACACTCCCAGG
CCGAAAATGTCGTGATTTTTTTCCACCTCCGTTTGCCGTTGGTGCAGGTC
CGGCATCAGCAGGCCATGCAGCAGCAGCAACAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig119:24996..26878+

>mRNA_Ecto-sp13_S_contig119.1617.1 ID=mRNA_Ecto-sp13_S_contig119.1617.1|Name=mRNA_Ecto-sp13_S_contig119.1617.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=255bp|location=Sequence derived from alignment at Ecto-sp13_S_contig119:24996..26878+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGGCGAATGGGAGTGAGCTGTTCCTCGATAGGGCCACTCGCGTGCG
CAAGATTCAGCAGATCGCGGCGTTCCTGGCTCAGATAGAGGGGAAGGACC
CGCAGGATCGGAGCCTGCATGGCCTTGCCCAGAAGTTCGAGAACCAGATA
TTCACAGCGGCGATGAACGTGGAGGACTACAACAACCGCATCAACAAGAA
GCTGAGCAAGGTCCAGAAGGTCCGGCATCAGCAGGCCATGCAGCAGCAGC
AACAG
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