mRNA_Ecto-sp13_S_contig11892.1611.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11892.1611.1
Unique NamemRNA_Ecto-sp13_S_contig11892.1611.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11892.1611.1 vs. uniprot
Match: D7FN35_ECTSI (Chorein N-terminal domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN35_ECTSI)

HSP 1 Score: 642 bits (1656), Expect = 1.810e-219
Identity = 330/346 (95.38%), Postives = 339/346 (97.98%), Query Frame = 1 
Query:    1 NSYVTAVAAAVAAARNKATNPRPGTSGSLPGGGLTPAANNKGAAAAAKAVRALFLQKWKSERHALLFKPLAVEIGAEVHQWDQPGGKSITPTYRVARLNVGVGELQAVVDSEQGRVVGAVVDEIVNLVRRSRFNRFIPQAYLPLRNLPPPKVHPPKPAKDGAPAGMLPSVETWSWASEMGGKTGVGRPKSAAEAVVVGGFAREGGAWARAMWRFAGACVRHDIRLALTKKLPASLPNWDGTISAEPSPSPGHPAMVAKPATNGVPPAGMDPASASLSWRVGYLRLHARTLLARDAKSLGSS-GGHRGVDVRRLGVPKGREPLSLEEMWDVAKVESFAPGDEVVFLR 1035
            +SYVTAVAAAVAAARNKATNPRPG SGSLPGGGLTPAANN GAAAAAKAVRALFLQKWKSERHALLFKPLAVEIGAEVHQWDQPGGKSI PTYRVARLNVGVGELQAVVDSEQGRVVGAVVDEI+NLVRRSRFNRFIPQAYLPLRNLPPPKVHPPKPAKDGAPAGMLPSVETWSWASEMGGKTGVGRPKSAAEAV+VGGFA+EGG+WARAMWRFAGACVRHDIRLALTKKLPASLPNW+G ISA+PSPSPGHP +VAKPATNGVPPAGMDPASASLSWRV YLRLHARTLLARDAK+LGSS GGHRGVDVRRLGVPKGREPLSLEEMWDVAKVESFAPGDEVVFLR
Sbjct:  296 DSYVTAVAAAVAAARNKATNPRPGASGSLPGGGLTPAANNSGAAAAAKAVRALFLQKWKSERHALLFKPLAVEIGAEVHQWDQPGGKSIAPTYRVARLNVGVGELQAVVDSEQGRVVGAVVDEIINLVRRSRFNRFIPQAYLPLRNLPPPKVHPPKPAKDGAPAGMLPSVETWSWASEMGGKTGVGRPKSAAEAVLVGGFAKEGGSWARAMWRFAGACVRHDIRLALTKKLPASLPNWNGAISADPSPSPGHPDVVAKPATNGVPPAGMDPASASLSWRVAYLRLHARTLLARDAKNLGSSSGGHRGVDVRRLGVPKGREPLSLEEMWDVAKVESFAPGDEVVFLR 641
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BLAST of mRNA_Ecto-sp13_S_contig11892.1611.1 vs. uniprot
Match: A0A6H5KF13_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF13_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 2.580e-18
Identity = 44/46 (95.65%), Postives = 46/46 (100.00%), Query Frame = 1 
Query:  898 SSGGHRGVDVRRLGVPKGREPLSLEEMWDVAKVESFAPGDEVVFLR 1035
            +SGGHRGVDVR+LGVPKGREPLSLEEMWDVAKVESFAPGDEVVFLR
Sbjct:   11 NSGGHRGVDVRKLGVPKGREPLSLEEMWDVAKVESFAPGDEVVFLR 56
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11892.1611.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FN35_ECTSI1.810e-21995.38Chorein N-terminal domain-containing protein n=1 T... [more]
A0A6H5KF13_9PHAE2.580e-1895.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11892contigEcto-sp13_S_contig11892:375..5136 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1038
Hectar predicted targeting categoryother localisation
Exons6
Cds size1038
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11892.1611.1prot_Ecto-sp13_S_contig11892.1611.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11892 375..5136 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462627.8694313-CDS-Ecto-sp13_S_contig11892:374..5131681462627.8694313-CDS-Ecto-sp13_S_contig11892:374..513Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11892 375..513 -
1681462627.882838-CDS-Ecto-sp13_S_contig11892:986..12141681462627.882838-CDS-Ecto-sp13_S_contig11892:986..1214Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11892 987..1214 -
1681462627.8956764-CDS-Ecto-sp13_S_contig11892:1836..20541681462627.8956764-CDS-Ecto-sp13_S_contig11892:1836..2054Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11892 1837..2054 -
1681462627.907643-CDS-Ecto-sp13_S_contig11892:2719..28541681462627.907643-CDS-Ecto-sp13_S_contig11892:2719..2854Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11892 2720..2854 -
1681462627.9200017-CDS-Ecto-sp13_S_contig11892:3932..40651681462627.9200017-CDS-Ecto-sp13_S_contig11892:3932..4065Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11892 3933..4065 -
1681462627.9329216-CDS-Ecto-sp13_S_contig11892:4951..51361681462627.9329216-CDS-Ecto-sp13_S_contig11892:4951..5136Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11892 4952..5136 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11892.1611.1

>prot_Ecto-sp13_S_contig11892.1611.1 ID=prot_Ecto-sp13_S_contig11892.1611.1|Name=mRNA_Ecto-sp13_S_contig11892.1611.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=346bp
NSYVTAVAAAVAAARNKATNPRPGTSGSLPGGGLTPAANNKGAAAAAKAV
RALFLQKWKSERHALLFKPLAVEIGAEVHQWDQPGGKSITPTYRVARLNV
GVGELQAVVDSEQGRVVGAVVDEIVNLVRRSRFNRFIPQAYLPLRNLPPP
KVHPPKPAKDGAPAGMLPSVETWSWASEMGGKTGVGRPKSAAEAVVVGGF
AREGGAWARAMWRFAGACVRHDIRLALTKKLPASLPNWDGTISAEPSPSP
GHPAMVAKPATNGVPPAGMDPASASLSWRVGYLRLHARTLLARDAKSLGS
SGGHRGVDVRRLGVPKGREPLSLEEMWDVAKVESFAPGDEVVFLR*
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mRNA from alignment at Ecto-sp13_S_contig11892:375..5136-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11892.1611.1 ID=mRNA_Ecto-sp13_S_contig11892.1611.1|Name=mRNA_Ecto-sp13_S_contig11892.1611.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4762bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11892:375..5136- (Ectocarpus species13 EcNAP12_S_4_19m)
AACAGCTATGTGACTGCGGTCGCTGCGGCCGTGGCCGCCGCAAGGAACAA
GGCTACCAATCCTCGTCCGGGGACGAGCGGTTCCCTCCCAGGGGGTGGGC
TAACGCCGGCGGCTAACAACAAGGGCGCCGCCGCTGCCGCGAAGGCCGTA
AGGGCGCTGTTTCTGCAGAAGTGGAAGTCGGAGCGGTGAGGGGGTCGTGG
TTTGGTTGTTGCTTGAAACTATCTTTTTTTCCCCACGTCCTGTGCCCTTT
TGGATTGTTCAGGCAGGTGAAAGTTTGATGTTCTTTCAGCCGTACAGAAG
TGCAATTGATTCACGATCTATGTATCGTCTTGCACTTTCGCCACATTGTT
GCCTGCCGTGATGAATGGGGCAGCCCATAGAGTTTCTTGTTCGTCGTTAT
TGAACGCCTTTTTTCTCGTATTCTCGCTCATCCGTCCCGTCCTCTGGGTT
TTGGCATGCCCTCGGCACCCCGCCCCCAAGAAATTTCGTGTTGTTTCTTC
AGCAATTATGAAATTAGTGTACGACCCTTCTTTTGTTTTTTACTTGTTGC
CACGTTGTTGCCTGCCATGTTTACCTGCTATGCCCGCCGTATCGGCAAGC
CGTTTTTTTTCTGAACCTCCCTGATTTTTTTAACCGGCTCCGCATTGTGG
TATGCGCTCGGGATCTCCAGCGAGTTACCTCGTAATCTTTCTGATTTTTT
TTCCCTTCTCCGCATTGCGGCATGCGCTCGGGATCGCCAGCGAGTTACCT
TTTGTTGGCTTGCCCCGTGTACTCCGACTCTTGTTGCCAACGCGCATATC
TTGCATGCATCATCCCTACTGCTTCACTTTCCGTACAAGTTTTACACTAC
TTTCCAATGCCACCGCCTTGTGTCATTGTTCCACATGGTCTTGATGTAGC
ACCAAGAGATGGGCGGCCGGTCCCCTATCCGTTGTTCTTGGTCCCGCCCG
TGTGCTGACACCGCCTGCTCCGACTTGTTTGAGATACCCGTTGCTGTTCA
AGTACCAGTGTTTTGCTTATTTTTGGTCCCGCCCCGGCGCGCTGCTTCCA
CCTGCTCCGACTTGTTTCAAGACATGCGTTGCTGTTTAAGCCTCTTGCCG
TCGAGATCGGCGCGGAGGTGCACCAGTGGGATCAGCCCGGCGGCAAGTCA
ATCACGCCTACCTACCGGGTTGCTCGGCTTAATGTCGGCGTCGGAGAGTT
GCAGGTAATAGTTTTTTGTGTGTTTTTTTTGCTATTTTTGATGTTTTTAT
CAACACACGTCCGAAAATCCAACATTGATTTAATGTATTTTTCGGAGAAG
CTGCATGTTATGTGTGGCTTTCTTACTAACATCGACCTCGCTTACCGGCT
GAGCAATGGAAACACGTCAGTTTAAGTGTGGTGGAAAACACACTACCTGG
TATGCTTCTATATTCCACGATATGTGTGTGTATTTTCTTTTTATTTTAAT
GACCCAACGAACCCATCTCTATCTGAGAAAAAGAGTATGAGGTAGAATAG
CAGTAAATTCTTAGCGTCAGAAAAGACGAGATGCCTGTATTTGCACGATT
TCCCGAGCAGCACACAGCGTGTGTGTCTTTTTATTATTAGCATCGACTGC
GCTAACCGGCTGACCAATGAACAGCCGTCAGTCTTCGCGCGGTTGGAAAC
ACAAAACACTTCTTATCTACGATGAACTGGGACCCGTGAGGGGGCAGCAT
GGGCGTGTGTGTGTGTGTGTGTTAGCTTTTTTTTAATGGTCCAACACACT
TTCCGAAATGCCGACAGATTTTCTTCGTTTTTTTCTCCAGAAGTGCGCTT
CGAGTGGATTGCTTTGCAGGAGAAAACTAGGCAATGATTCAAGAAACGAA
ATTGTTATCATAAAGTGTTTTTTCCGCTCGAGTAGCAGATATTTGGTGCC
GGTACATGCGCGATGCTGCTGCAGTTTGCCGCGGTGACCTCTCGCCGAGT
ATTGTTCAGTGCGACCAGTGCTAGTGTGACGATCGGGCCGTGCGCTCAGC
AGTGCTTTTGCCTATTCTGACCCTGTGCTTAACCTTATCTTCCATTCTGT
GTCATTTTTCTCCACTTGTATTCACTGGTGTCATTTTTGTATGAGCTTCA
ACTCGTCTTCCATACTGTCATTTTTTGTGCTTGAACCTCCCCTCTCATCC
CATTAAAAAAAATCGGTTTTTACTGATTTTCCATTGCATCATTTATTTGT
TTACTTAATCTTAGCTTCCCTTTTAATCTTAGCTTGTCTTTCATCGTGTC
GATTTCTTTTCGCCCGGGGGTGGGTGATGCAGGCTGTGGTGGACTCGGAA
CAGGGCAGGGTCGTCGGAGCGGTGGTCGACGAGATCGTCAACCTCGTCAG
GAGGTCGAGATTCAACCGCTTCATCCCCCAGGCTTATCTTCCCCTGAGGA
ACCTTCCGCCTCCCAAGGTATGCGCTGTACCACCTGCCCATGCGAGGGAA
GGTGACAAGTGTACGGTCGGGGTCCATTTTATGGGGCGGGTTATTGCAGG
GCAAGTGGGATGTACAGTACACAGGCGAGTGAACAATTATGGCAAATAGA
TCAGAATAAATTGGTAGCTCTGAACATTAGGCGGGTGCCTGTTATTGGGC
GGGCAAACCGGCCTTACTCGCACCATAGAGGAACCCCGACTGCTGTACAT
GTTACCGATCGTGCAACAGTGGTACATCAATGTGGACTGGAAGTAGCGGA
ACGTGTCCAAGAAATGTGAATGTCTTAATGGTTGCCCAAGCGATTGACAA
ATATTGTGTGTACGAAGGTTCAAGATTCAAAAATATTCTTACGAAGTGTA
CAGGAAGTTGTTCCCCCCGAAAGAAAGTTCCGCACGTCTTGACGAGGACT
AGGAGGGTGGCGATATATCAACCTCCGCTCCTCCTCCTCATCCGATCTCT
ATCAGCGACATTTTGAGCACGCGCCCCCCCAGCAACACAACCAACCCGAA
AAGGCAACACCGGGGAGCAAAAATAGACCTGTCGGAAGCATATACTCTAT
GCTCGCTTACAAAAATGAGCAAAAATATCAGAAGCAGAAATAGGGGAAGG
TTTGAAAATCGACCTCCACGTCCGGCCGGTAGGTCCACCCCCCCAAGCCT
GCCAAGGACGGGGCCCCCGCCGGCATGCTTCCTTCTGTGGAAACTTGGTC
CTGGGCGTCGGAGATGGGGGGAAAGACCGGGGTGGGCAGGCCCAAGTCTG
CGGCGGAGGCCGTGGTTGTCGGGGGCTTCGCGAGGGAAGGGGGCGCCTGG
GCTCGCGCGATGTGGCGGTTCGCTGGGGCGTGCGTGCGGCACGACATTCG
GTAAGGGGAGCCGGGGGTACCCACCGGAGGGGAGGCTTTTCGGGGGGTGT
TCATGAAAACGTAGCCGTCGTCCTTCGAACGTAGACCCCGCATCCCTACA
ATGCCGGCACGGAGTGATTTGCTCGGCCCAGGCTAGGTTTCACAAGGACG
AACCAGAAGCTGGTCGTCATTCTTGCGTCTGCGGCACGTACCACTCGAGA
TATGTCATGGGTTCATTGGGCGTCCCGGCTAACCAAACGCTGGGGGGCGG
GAGCAGCGTTCTCGTGTTCTGCATACCGTAGATGTTGAAGCATTAGCCGT
ACGTGCTCGAGAGGTTGAAGCATATCCAGAGGTGGGAGGGGGTGGGTACT
GACTGGTTGTGAGATTTTTGGACAACACTACTCGCAGAAAGGAATGAACA
GGAAATGAGGAAGTCACAGGCTTTGGTGATTGTGTTGAGATGGTACTGCT
GCGAGGGGGGAGGACACGGGGGGTCTGCAGACCCGAGAGAGGCAGCACAA
AGGAACTCAAGAGCGACTTGAGCAAGGGCACGCCGCATTCCACCCCACCG
CATTCAACACCTCCAAACGCAGAGCAACAACGAGGACACCCCCATGCTCG
AAACGCACGTACGCACGTGCAGGTTGGCGCTGACTAAGAAGCTCCCCGCA
TCCCTCCCCAACTGGGACGGCACGATCTCGGCGGAACCGTCACCGTCACC
TGGCCACCCCGCCATGGTGGCCAAGCCTGCCACCAACGGCGTCCCACCGG
CGGGAATGGATCCTGCTTCCGCGTCGTTGAGCTGGCGCGTTGGCTACCTG
AGGCTGCACGCTAGAACGCTCCTGGCCAGAGACGCCAAGAGCCTCGGAAG
GTGACGAGTGCAGTCGTGGGTGTGATTGGTGTGTGACGATGCAATAGCCG
GCGCGTGTCAGGCTCTTTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCT
GTATCTGTGTCTGTCTCTGTGTCTGTCTCTGTCTCTGTCTGTCTCTGTGT
GTGTCTCTCTCTCTGTCTCTCTGTCTAGCTCTCTCTCTCTCTCCCTCTCT
CCCTCTCTCTCTCGGAGTCAATTTGTGTTCCACTCAGCAGTCTTGTTAGC
GGGCCGGAGAGCACAGTCGGTGTAGTAGTCTCTTCTCCTTGTCGTCGCCC
TACCGTGTTTGCCTCCCTCCCTCTATCGGAGTTTTTTTTCCACGCAGTCT
TGTTTAGCGTGCCAAAGAGCGCAGTCGGTGATTCCTTGTTGTAGTCGCCT
TCCTTCTCTCCCTGTGTCGCCGCCGCCGCCTACTAATACCGATGGCGACG
GGTCTCGCGTTGGCGCACAGCAGCAGCGGGGGGCACCGCGGAGTAGACGT
GCGGAGACTCGGGGTACCCAAGGGGCGGGAGCCGCTGTCCCTCGAGGAGA
TGTGGGACGTCGCCAAGGTGGAGTCTTTCGCTCCTGGAGACGAGGTGGTT
TTCCTCAGGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11892:375..5136-

>mRNA_Ecto-sp13_S_contig11892.1611.1 ID=mRNA_Ecto-sp13_S_contig11892.1611.1|Name=mRNA_Ecto-sp13_S_contig11892.1611.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1038bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11892:375..5136- (Ectocarpus species13 EcNAP12_S_4_19m)
AACAGCTATGTGACTGCGGTCGCTGCGGCCGTGGCCGCCGCAAGGAACAA
GGCTACCAATCCTCGTCCGGGGACGAGCGGTTCCCTCCCAGGGGGTGGGC
TAACGCCGGCGGCTAACAACAAGGGCGCCGCCGCTGCCGCGAAGGCCGTA
AGGGCGCTGTTTCTGCAGAAGTGGAAGTCGGAGCGACATGCGTTGCTGTT
TAAGCCTCTTGCCGTCGAGATCGGCGCGGAGGTGCACCAGTGGGATCAGC
CCGGCGGCAAGTCAATCACGCCTACCTACCGGGTTGCTCGGCTTAATGTC
GGCGTCGGAGAGTTGCAGGCTGTGGTGGACTCGGAACAGGGCAGGGTCGT
CGGAGCGGTGGTCGACGAGATCGTCAACCTCGTCAGGAGGTCGAGATTCA
ACCGCTTCATCCCCCAGGCTTATCTTCCCCTGAGGAACCTTCCGCCTCCC
AAGGTCCACCCCCCCAAGCCTGCCAAGGACGGGGCCCCCGCCGGCATGCT
TCCTTCTGTGGAAACTTGGTCCTGGGCGTCGGAGATGGGGGGAAAGACCG
GGGTGGGCAGGCCCAAGTCTGCGGCGGAGGCCGTGGTTGTCGGGGGCTTC
GCGAGGGAAGGGGGCGCCTGGGCTCGCGCGATGTGGCGGTTCGCTGGGGC
GTGCGTGCGGCACGACATTCGGTTGGCGCTGACTAAGAAGCTCCCCGCAT
CCCTCCCCAACTGGGACGGCACGATCTCGGCGGAACCGTCACCGTCACCT
GGCCACCCCGCCATGGTGGCCAAGCCTGCCACCAACGGCGTCCCACCGGC
GGGAATGGATCCTGCTTCCGCGTCGTTGAGCTGGCGCGTTGGCTACCTGA
GGCTGCACGCTAGAACGCTCCTGGCCAGAGACGCCAAGAGCCTCGGAAGC
AGCGGGGGGCACCGCGGAGTAGACGTGCGGAGACTCGGGGTACCCAAGGG
GCGGGAGCCGCTGTCCCTCGAGGAGATGTGGGACGTCGCCAAGGTGGAGT
CTTTCGCTCCTGGAGACGAGGTGGTTTTCCTCAGGTAA
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