mRNA_Ecto-sp13_S_contig11857.1592.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11857.1592.1
Unique NamemRNA_Ecto-sp13_S_contig11857.1592.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11857.1592.1 vs. uniprot
Match: A0A6H5JN40_9PHAE (Importin N-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JN40_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 7.040e-39
Identity = 80/88 (90.91%), Postives = 80/88 (90.91%), Query Frame = 3 
Query:    3 DTIEEYLNGWNDEDEEDEQFSTPIDDVDLRMFFYESFRVANEREPEAMLRLQQQLKPETLKECQEHFAEAQKQQAAAAAA---GGTPA 257
            DTIEEYLNGWNDEDEEDEQFSTPIDDVDLRMFFYESFRVANEREPEAMLRLQQQLKPETLKECQEHFAEAQKQQA        GGTPA
Sbjct:  948 DTIEEYLNGWNDEDEEDEQFSTPIDDVDLRMFFYESFRVANEREPEAMLRLQQQLKPETLKECQEHFAEAQKQQAXXXXXXXXGGTPA 1035
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11857.1592.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JN40_9PHAE7.040e-3990.91Importin N-terminal domain-containing protein n=2 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11857contigEcto-sp13_S_contig11857:2993..3588 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score85.1
Seed ortholog evalue1.1e-14
Seed eggNOG ortholog2880.D8LDH6
Preferred nameNMD5
Model size376
KEGG koko:K20223
KEGG TC1.I.1
KEGG Pathwayko04013,map04013
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0005049,GO:0005215,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005737,GO:0005829,GO:0006403,GO:0006405,GO:0006406,GO:0006606,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0007154,GO:0007165,GO:0008104,GO:0008150,GO:0008152,GO:0008565,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016021,GO:0016043,GO:0016441,GO:0016458,GO:0017038,GO:0017076,GO:0019001,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0023052,GO:0031047,GO:0031224,GO:0031503,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032991,GO:0033036,GO:0033365,GO:0034399,GO:0034504,GO:0034613,GO:0034622,GO:0035194,GO:0035195,GO:0035280,GO:0035639,GO:0036094,GO:0040029,GO:0042886,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048519,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050896,GO:0051028,GO:0051168,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0061608,GO:0065003,GO:0065007,GO:0070013,GO:0070727,GO:0070922,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0072594,GO:0097159,GO:0097367,GO:0140104,GO:0140142,GO:1901265,GO:1901363
Exons2
EggNOG free text desc.Ran GTPase binding
EggNOG OGsCOG4581@1,KOG1991@2759
Cds size168
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462625.9077096-UTR-Ecto-sp13_S_contig11857:2992..31081681462625.9077096-UTR-Ecto-sp13_S_contig11857:2992..3108Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11857 2993..3108 -
1681462625.9383252-UTR-Ecto-sp13_S_contig11857:3496..35881681462625.9383252-UTR-Ecto-sp13_S_contig11857:3496..3588Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11857 3497..3588 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462625.9190142-CDS-Ecto-sp13_S_contig11857:3108..32611681462625.9190142-CDS-Ecto-sp13_S_contig11857:3108..3261Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11857 3109..3261 -
1681462625.928468-CDS-Ecto-sp13_S_contig11857:3481..34961681462625.928468-CDS-Ecto-sp13_S_contig11857:3481..3496Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11857 3482..3496 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11857.1592.1prot_Ecto-sp13_S_contig11857.1592.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11857 3109..3496 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11857.1592.1

>prot_Ecto-sp13_S_contig11857.1592.1 ID=prot_Ecto-sp13_S_contig11857.1592.1|Name=mRNA_Ecto-sp13_S_contig11857.1592.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=56bp
MFFYESFRVANEREPEAMLRLQQQLKPETLKECQEHFAEAQKQQAAAAAA
GGTPA*
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mRNA from alignment at Ecto-sp13_S_contig11857:2993..3588-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11857.1592.1 ID=mRNA_Ecto-sp13_S_contig11857.1592.1|Name=mRNA_Ecto-sp13_S_contig11857.1592.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=596bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11857:2993..3588- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGATACAATCGAGGAGTACTTGAACGGCTGGAATGACGAGGACGAGGAG
GACGAGCAGTTCTCGACACCGATAGATGACGTCGACCTGAGGATGTTCTT
TTACGAGGTGAACGTTTCTATATCGATTTACCAAATGACGATGCACTGCC
TCACGCGTTCGTTGTATTGAAGCGGCTGCCCCTTGGAACAATTTAGAGAG
ACAGGTGCCATGTATTCAGGCTTGAGCGGTTGGCGTATGCGAGATAATCC
TCGACGTCGGACAGTCAGTCTGACATCTCGTTGACGTCATCCCTCGCGTG
TGAATGGACCCCGTTTACTTTCTGCAGTCGTTCCGCGTGGCAAACGAGCG
AGAACCGGAAGCCATGCTGCGGCTCCAGCAACAGCTCAAGCCAGAAACGC
TCAAGGAGTGCCAGGAGCATTTCGCAGAGGCGCAGAAGCAACAGGCTGCG
GCGGCCGCGGCGGGAGGTACACCAGCATGACACAAACCTCAGGGACCGTG
ACAAGCGCATGTGGCATAAGTAGAAATTGGCGGCAAAATATACCGCTCTA
GAGATGAGGTGACGTGTTGGCGGAGAGGCTCGTGGTTGTATTTGCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11857:2993..3588-

>mRNA_Ecto-sp13_S_contig11857.1592.1 ID=mRNA_Ecto-sp13_S_contig11857.1592.1|Name=mRNA_Ecto-sp13_S_contig11857.1592.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=168bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11857:2993..3588- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCTTTTACGAGTCGTTCCGCGTGGCAAACGAGCGAGAACCGGAAGC
CATGCTGCGGCTCCAGCAACAGCTCAAGCCAGAAACGCTCAAGGAGTGCC
AGGAGCATTTCGCAGAGGCGCAGAAGCAACAGGCTGCGGCGGCCGCGGCG
GGAGGTACACCAGCATGA
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