mRNA_Ecto-sp13_S_contig11856.1591.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11856.1591.1
Unique NamemRNA_Ecto-sp13_S_contig11856.1591.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11856.1591.1 vs. uniprot
Match: D7FMN8_ECTSI (Survivin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMN8_ECTSI)

HSP 1 Score: 236 bits (601), Expect = 1.450e-69
Identity = 123/127 (96.85%), Postives = 125/127 (98.43%), Query Frame = 1 
Query:    1 SGRKRKKLTFAMEEYRVDSVNSSLRVLEESCLVPFLQQLLENDSLLDVDRHAALYTSVFKLVRCIASWRSLHPLLGPMKGQKPRRSLYRLLSKLGDRAKVYQSTTSKGRVGKGSDNGKAKAKGSNVK 381
            SGRKRKKLTFAMEEYRVDSVNSSLRVLEESCLVPFLQQLLENDSLLDVDRHAALYTSVFKLVRCIASWRSLHPLLGPMKGQKPRRSLYRLLSKLGDRAKVYQSTTSKGRVGKG DN KAKAKG+N+K
Sbjct:  710 SGRKRKKLTFAMEEYRVDSVNSSLRVLEESCLVPFLQQLLENDSLLDVDRHAALYTSVFKLVRCIASWRSLHPLLGPMKGQKPRRSLYRLLSKLGDRAKVYQSTTSKGRVGKGGDNAKAKAKGTNLK 836
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BLAST of mRNA_Ecto-sp13_S_contig11856.1591.1 vs. uniprot
Match: A0A6H5JJC0_9PHAE (UBC core domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJC0_9PHAE)

HSP 1 Score: 231 bits (588), Expect = 1.430e-68
Identity = 121/127 (95.28%), Postives = 123/127 (96.85%), Query Frame = 1 
Query:    1 SGRKRKKLTFAMEEYRVDSVNSSLRVLEESCLVPFLQQLLENDSLLDVDRHAALYTSVFKLVRCIASWRSLHPLLGPMKGQKPRRSLYRLLSKLGDRAKVYQSTTSKGRVGKGSDNGKAKAKGSNVK 381
            SGRKRKKLTFAMEEYRVDSVNSSLRVLEESCLVPFLQQLLENDSLLDVDRHAALYTSVFKLVRCIASWRSLHPLLGPMKGQKPRRSLYRLLSKLGDRAKVYQSTTSKGR GKG DN KA AKG++VK
Sbjct:  341 SGRKRKKLTFAMEEYRVDSVNSSLRVLEESCLVPFLQQLLENDSLLDVDRHAALYTSVFKLVRCIASWRSLHPLLGPMKGQKPRRSLYRLLSKLGDRAKVYQSTTSKGRQGKGGDNAKANAKGNDVK 467
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BLAST of mRNA_Ecto-sp13_S_contig11856.1591.1 vs. uniprot
Match: UPI0006B0DB64 (uncharacterized protein LOC106460649 isoform X1 n=2 Tax=Limulus polyphemus TaxID=6850 RepID=UPI0006B0DB64)

HSP 1 Score: 58.9 bits (141), Expect = 1.500e-7
Identity = 28/73 (38.36%), Postives = 49/73 (67.12%), Query Frame = 1 
Query:   76 VLEESCLVPFLQQLLENDSLLDVDRHAALYTSVFKLVRCIASWRSLHPLLGPMKGQKPRRSLYRLLSKLGDRA 294
            +LE S L+PFL+Q LE +S +++ RH  +Y ++ +L++ IA   +L PL GP+  QK  +S+++ L +L  +A
Sbjct:  545 ILENSSLIPFLEQYLEQESFVEISRHTGIYKAIIQLLKEIAQQPTLVPLFGPLPNQK--QSIHQFLGRLAQQA 615
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BLAST of mRNA_Ecto-sp13_S_contig11856.1591.1 vs. uniprot
Match: A0A151ZFA9_9MYCE (Baculoviral IAP repeat-containing protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZFA9_9MYCE)

HSP 1 Score: 51.2 bits (121), Expect = 7.230e-5
Identity = 23/42 (54.76%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:   76 VLEESCLVPFLQQLLENDSLLDVDRHAALYTSVFKLVRCIAS 201
            +LEESCLVPF++    + SLLDV+RHA L+TS+ KL+  ++S
Sbjct:  457 ILEESCLVPFIESYCRDISLLDVERHADLWTSILKLMETMSS 498
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11856.1591.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FMN8_ECTSI1.450e-6996.85Survivin n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
A0A6H5JJC0_9PHAE1.430e-6895.28UBC core domain-containing protein n=1 Tax=Ectocar... [more]
UPI0006B0DB641.500e-738.36uncharacterized protein LOC106460649 isoform X1 n=... [more]
A0A151ZFA9_9MYCE7.230e-554.76Baculoviral IAP repeat-containing protein n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11856contigEcto-sp13_S_contig11856:520..2997 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score236.1
Seed ortholog evalue9e-60
Seed eggNOG ortholog2880.D7FMN8
Model size384
KEGG koko:K10582,ko:K10586
KEGG Pathwayko04120,ko04214,ko04215,map04120,map04214,map04215
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.protein modification by small protein conjugation
EggNOG OGsCOG5078@1,KOG0895@2759,KOG0897@1,KOG0897@2759
EC2.3.2.23
Cds size384
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462625.847454-CDS-Ecto-sp13_S_contig11856:519..6061681462625.847454-CDS-Ecto-sp13_S_contig11856:519..606Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11856 520..606 -
1681462625.8571475-CDS-Ecto-sp13_S_contig11856:1360..14771681462625.8571475-CDS-Ecto-sp13_S_contig11856:1360..1477Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11856 1361..1477 -
1681462625.867666-CDS-Ecto-sp13_S_contig11856:2592..27251681462625.867666-CDS-Ecto-sp13_S_contig11856:2592..2725Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11856 2593..2725 -
1681462625.8754456-CDS-Ecto-sp13_S_contig11856:2950..29971681462625.8754456-CDS-Ecto-sp13_S_contig11856:2950..2997Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11856 2951..2997 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11856.1591.1prot_Ecto-sp13_S_contig11856.1591.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11856 520..2997 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11856.1591.1

>prot_Ecto-sp13_S_contig11856.1591.1 ID=prot_Ecto-sp13_S_contig11856.1591.1|Name=mRNA_Ecto-sp13_S_contig11856.1591.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=128bp
SGRKRKKLTFAMEEYRVDSVNSSLRVLEESCLVPFLQQLLENDSLLDVDR
HAALYTSVFKLVRCIASWRSLHPLLGPMKGQKPRRSLYRLLSKLGDRAKV
YQSTTSKGRVGKGSDNGKAKAKGSNVK*
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mRNA from alignment at Ecto-sp13_S_contig11856:520..2997-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11856.1591.1 ID=mRNA_Ecto-sp13_S_contig11856.1591.1|Name=mRNA_Ecto-sp13_S_contig11856.1591.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2478bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11856:520..2997- (Ectocarpus species13 EcNAP12_S_4_19m)
AGCGGGAGAAAGAGAAAAAAACTCACGTTTGCTATGGAGGAGTACAGGTA
TATTGTTGTCTTCGCATCAAAAACCTTTCCGCTCTCTACTCACCACCTTT
TATGTAACGTTGGGTTGTCGGACATTCTGCTTAGTGCTGGGACGTAAGGC
CGGCCGAATCCCTTGGCGCAGGAGGATGCCACAAAATGATTGTAGCATCT
CACGTGCATCTCTGCGTACAAATGTCAAATTGTCATGTCTTTTTTTATGA
ACTGCCTTGTGCGTGACGTCAGGGTGGACAGCGTGAACTCGAGCCTGAGG
GTGTTAGAAGAGTCGTGTCTGGTGCCGTTCCTGCAGCAGCTTCTCGAGAA
CGACTCTCTCCTCGACGTCGACAGGCACGCCGCCCTCTACACCTCCGTCT
TCAAGGTGACCGACCGACTTGGCTTGTTAGGACATACTTGGAAGAACAAG
GGTACTTTCCGAACGGTAGATAGACACGCCGCGCTCCACCTCCCGTATTG
AAATTGACCGACTTGTTTAGACATATTTGGGTACCTTGCGAATGGTAGAG
AGGGTGGGCACGCCACGCTCCACCTCCCGTCTTGAAATCGGCCGACTTGT
TTGGACATATTAGGGTATCTTACGAACGGTAGATACGGTGGGCACGCTGC
CCTCTACACCTCTGTGTTCAAGGTGGCTGACTTGACATGTTTGGACATAT
TAGGGTACCTCTCGAACGATAGATAGGCACGCCGCGCTCTACACCTCCGT
CTTCAAGGTGATCGACTCGGCTTATTAGGACATATTCGGGTACCTTCCGG
ACGGTAGGTAGGCGCGCCGCGCCCCACCTCCCGTCTTGAAATTGACCGAG
TTTGTTAGGACATGTTAGGGTACCTTCCGAACGGTAGATAGGCACGCCGC
TCTCAATTTCGCGTCTTGAAACTGACTGATTTGTTAAGACATATTTGGGG
TACGTTACGAACGGTAGATACCGTGGGCACGCCGCGCTTTACGCCTCCGC
CTTCAAGGTGACTGATTTGGCTTGTTAGCTCGCAACAGCAGGCCACACAC
CAACCTTGAGGAGAAGTAACAACGTGGTATTCGAATGTCGATGCTACAGC
CTCATTGGGATGTTGAAGGGGACCTTCCGAGCCTCATGGTAACATGCGAC
CGGTCAGAATATATACAGTTTCGGCGAAGATAATCTAGGGGATTCACAGC
TGGATCGAACCTGAGGAGAGAGGAAGTAATTCGAAGCAGACCCGGAATTC
GCGGCCAAACACAAGCAAGGTTGGAGGTACAGTTGCCGTTCCCCGTTGAA
GAACACTGACCTCATGGATTTGCAAAGCATGAGTACCCCCCCCACCCCAC
CCCTGCGCGCTTAAACACCCCTCTCTCGCTGGCATGCAAACCCTCCAACT
GCCCTACACTGATTGATACTGGGCAGTATGTCCCCCCGTAAACTTTTCTG
ACGGTCCTGCGGATCCCCCCCCCCCAAACATGCCTCTCTGACGGTCGTGC
CGACTTTGTTTGTTGTATAGCTGGTTCGATGCATCGCGTCTTGGCGATCC
CTCCATCCCCTTCTTGGACCGATGAAGGGGCAGAAGCCACGCCGAAGCCT
ATACCGGCTCCTCAGCAAGCTGGGGGATCGGGCCAAGGTGTGCACGTAGA
CACATGTGTTGTCGTTGTTGTTGTTGTTGTTGTCGTTGTTGTTATTGCTA
CTGTTGTTGTTATTGACGATGAGGACATGTTTATTGTTATTTGTGTTGTT
GCTCTTGTTGTCGTTGTCTTCGACATTGCAAACCGTTCCGGTCTCTACTC
TGTACCCTCTAATACCCGTACCGGTCCAACTGACTTTGGCGCCTTCCGTG
GCCACTGGCAGGCCGACTACCAAACGGGAAGAAGTACAGTGGACTCAGAA
GATCCTCAATCAAACGCGGAAGCTTGTATTGATATGCTGTGTGTTGTGGT
GGGTGTTGCGATGTTGTCGTCGCCGTTGTTGCTGTTGCTTCTCCTGAAGT
GTCAGTCGATTGTCGCACCCCCTCTCCTCTCGCTTGTGGAGCTCTTGACC
CTTGAAACAAAGCGGTCACTTTTTTTTCTTCCGCGCTTGACTCGTCAGCT
GAACATATGTAGCACGTCTCACCCTACCTACTTTGATTTTTGTAGTTGCC
GTTTTCAACGCACCCCGCCCCCCCTCGTGAAAGGCGGGAAGTGATATCGA
TAGGTTGGGGAAATATTTTTGAACCGCGTTTGGTGAAGTGGGAAGGAACG
ATTGGCCATCGGTACTCGGTCCTGTGGGAACAATGCTCCGTCCTCTCGAG
GACGCGTGGTCAATGGTCTGACCGCTAAGGCGTGCAAAACGTAAGAGTAC
GCCTCCCCTCCCCCCCCTCACCGTATTTTTTGCGCTTGGAGGTCTACCAA
TCGACGACGTCGAAAGGGAGGGTGGGCAAAGGGAGCGACAATGGCAAGGC
CAAGGCGAAGGGGAGCAACGTAAAGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11856:520..2997-

>mRNA_Ecto-sp13_S_contig11856.1591.1 ID=mRNA_Ecto-sp13_S_contig11856.1591.1|Name=mRNA_Ecto-sp13_S_contig11856.1591.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=384bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11856:520..2997- (Ectocarpus species13 EcNAP12_S_4_19m)
AGCGGGAGAAAGAGAAAAAAACTCACGTTTGCTATGGAGGAGTACAGGGT
GGACAGCGTGAACTCGAGCCTGAGGGTGTTAGAAGAGTCGTGTCTGGTGC
CGTTCCTGCAGCAGCTTCTCGAGAACGACTCTCTCCTCGACGTCGACAGG
CACGCCGCCCTCTACACCTCCGTCTTCAAGCTGGTTCGATGCATCGCGTC
TTGGCGATCCCTCCATCCCCTTCTTGGACCGATGAAGGGGCAGAAGCCAC
GCCGAAGCCTATACCGGCTCCTCAGCAAGCTGGGGGATCGGGCCAAGGTC
TACCAATCGACGACGTCGAAAGGGAGGGTGGGCAAAGGGAGCGACAATGG
CAAGGCCAAGGCGAAGGGGAGCAACGTAAAGTGA
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