mRNA_Ecto-sp13_S_contig11832.1578.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11832.1578.1
Unique NamemRNA_Ecto-sp13_S_contig11832.1578.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig11832.1578.1 vs. uniprot
Match: D8LL46_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL46_ECTSI)

HSP 1 Score: 186 bits (473), Expect = 4.340e-54
Identity = 92/112 (82.14%), Postives = 97/112 (86.61%), Query Frame = 1 
Query:    1 MAVPIAPFDVHTDDVYSFPTYFRGFPVAHSLENLCVAPEVTAPSKTDTSFLEGETLCLVVPIREYPRASKTDDDTCAALTCREAGACSLAKFPTVAPFDLRDFHERAV*AEA 336
            M V IAPFDVHTD +YSFPTYFRGF VAHSLE+LCVAPEVTAPS TDTSF+EGETLCLVVPIR+YPRASKTDD+T AALTC EAGAC LA  PTVAP DLR  HER V AEA
Sbjct:  130 MTVSIAPFDVHTDGMYSFPTYFRGFQVAHSLEDLCVAPEVTAPSGTDTSFMEGETLCLVVPIRKYPRASKTDDETFAALTCDEAGACVLATLPTVAPLDLRHIHERLVLAEA 241
[Close]
BLAST of mRNA_Ecto-sp13_S_contig11832.1578.1 vs. uniprot
Match: D7FGZ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGZ7_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 1.160e-15
Identity = 38/48 (79.17%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:  199 RASKTDDDTCAALTCREAGACSLAKFPTVAPFDLRDFHERAV*AEARQ 342
            RASKTDD+TCAALTC EAGAC+LA  PT+AP DLRD HER V AEARQ
Sbjct:    4 RASKTDDETCAALTCHEAGACALATLPTLAPLDLRDIHERVVQAEARQ 51
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11832.1578.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LL46_ECTSI4.340e-5482.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FGZ7_ECTSI1.160e-1579.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11832contigEcto-sp13_S_contig11832:2703..4550 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size343
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-26_003510.1
Cds size327
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462624.728331-UTR-Ecto-sp13_S_contig11832:2702..27181681462624.728331-UTR-Ecto-sp13_S_contig11832:2702..2718Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11832 2703..2718 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462624.7372568-CDS-Ecto-sp13_S_contig11832:2718..28471681462624.7372568-CDS-Ecto-sp13_S_contig11832:2718..2847Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11832 2719..2847 -
1681462624.7460158-CDS-Ecto-sp13_S_contig11832:3289..34091681462624.7460158-CDS-Ecto-sp13_S_contig11832:3289..3409Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11832 3290..3409 -
1681462624.755488-CDS-Ecto-sp13_S_contig11832:4472..45501681462624.755488-CDS-Ecto-sp13_S_contig11832:4472..4550Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11832 4473..4550 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11832.1578.1prot_Ecto-sp13_S_contig11832.1578.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11832 2719..4550 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11832.1578.1

>prot_Ecto-sp13_S_contig11832.1578.1 ID=prot_Ecto-sp13_S_contig11832.1578.1|Name=mRNA_Ecto-sp13_S_contig11832.1578.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=109bp
MAVPIAPFDVHTDDVYSFPTYFRGFPVAHSLENLCVAPEVTAPSKTDTSF
LEGETLCLVVPIREYPRASKTDDDTCAALTCREAGACSLAKFPTVAPFDL
RDFHERAV*
back to top

mRNA from alignment at Ecto-sp13_S_contig11832:2703..4550-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11832.1578.1 ID=mRNA_Ecto-sp13_S_contig11832.1578.1|Name=mRNA_Ecto-sp13_S_contig11832.1578.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1848bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11832:2703..4550- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCGTGCCCATCGCTCCGTTCGATGTGCACACGGACGACGTGTACTC
GTTTCCCACGTACTTCCGTGGCTTTCCGGTGAGAGGGGGGTCGTGCACTG
TGGTGTGGTAGCCTCAAGCATGCATGTGTCGTTAGCTTTCAGTGAATCTT
GCCACCAGCAGCAGCTACCGCAGTAGACATCCATTGACCTCGGCACAGTG
GTCGTCTCCAGAAAAACGACGCCCACACGAATAGCACCACCAGCAGTATC
TTTAGCACTTGACGGTGCATGGCCCACCTCTATTTCTACTCTGCCCACAT
TGGGCAAAGTGGGCGTTGCCCACTTTGACGCCCACTTTGCCCAATCGGCC
ATCGGTCGTTACCGTGCTACGTTATTTTTTTTTGTTCGCCCTTCCCCCTT
CGCCCTTCGCCCTTCGCCCTTCGCCCTTCATCAGATCTCTGGCGCACCGA
ATTTCGTGCAGCATGTCCACACAAACGGAACGACTTCTGAGAATCCCAGG
ATTATTCATTGCCCAAATCCATCTTCCTCTCTCCCCCCCCACGTCCCCCG
GACGGTGTTCGCCATCGGGGTTGGGTTTTCATCGCTTAACAACGAAGTTG
TTAGACAAGCCGATCACTTCGCGAGGTCGGAAACCAGGTTACCGCCTCTT
TTTTTTACTTGTTTCTGTTTTTTTGTGCGGTAACCTTATTGGTGGTCGAC
TAGATTGTGTTGTGCGGCCTCACTCTCCGCTCAAAGGGGGTAATCTCAAC
ACCTTGTGTTACATTGGCCAAGCATCCTCGAGGCAGTTACACAGTGCTTA
CAACTGTCTCTGGAAGTGAGAGCACAAGAAAATAGAAGAAAGTATCATTC
GCAGCTGTCATCTGTGTGCAAGGAAGTAAGCACATGATGCCGAACACCCT
TAGCAGGATGCAGCGCACCCTTCATGCGACTCGCCGTATACCTCACGACG
CTTCGCGCTTGGTGATTATAGAGCCTGGTCCGGTGAGAACCCGGCATGGT
CCGTCCCGGCCTTGCAGGGATGCGAGATCGATGTACGGCTGCTCGACAAT
GAGTATCCCTCCCTCCCTGTCTCCTTGCGGCTGCGATACTGAGCTCCCCC
CTCGCCCAAAATGCACCCGCTCCTTTCGCTTCTCCAAATAGGTGGCGCAT
TCGCTCGAGAACCTCTGTGTTGCCCCGGAAGTGACCGCTCCCTCCAAAAC
GGACACCTCCTTTCTGGAGGGCGAGACGCTGTGCTTGGTGGTTCCTATCC
GCGAGTACCCGGTGAGGCATGCTTTCGCCGGCCTCGCCTGCGCGTAGCTC
CGTATACAGCAGTGCGGGCCGCGTAGACCAGACGTTGAGCATTCATCTTT
TTCTCTCTTATCTTCAGCATCATAAGTTGCAGGTTGCTGTCGAGTTCATT
TTGGGGCTATTTGCGCGTTGAGACGTTGTTGCACGCCTGTACTGTTGTCG
TAGGACACCCAAGCCCCTAACAACTGCTAGGTATGAACTCCCACTGTGCA
TATTGTATCTTCTTTCGATTATTGTGAGGCCGGTGGAAGCAAGCATGCTC
CCCACGAGGGAAAAAGGCGCGGGCGGGGAACCAAACCAAGCCAACACTTA
TGCTGTTTGACGGTGAAGCGCAGTCATAGTCTTGGTCAACCTTCCCTCGC
CCAAGCGCTTTCCACCGCTGACCTCCACGTTGCTTCCCCCTTGCATGTCG
CAGAGAGCCAGCAAGACCGACGACGATACGTGCGCGGCCCTCACCTGTCG
CGAGGCCGGTGCATGTTCGCTCGCCAAGTTCCCCACCGTGGCGCCTTTCG
ATCTTCGTGACTTTCACGAGCGTGCCGTGTAGGCCGAGGCTCGCCAGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11832:2703..4550-

>mRNA_Ecto-sp13_S_contig11832.1578.1 ID=mRNA_Ecto-sp13_S_contig11832.1578.1|Name=mRNA_Ecto-sp13_S_contig11832.1578.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=327bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11832:2703..4550- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCGTGCCCATCGCTCCGTTCGATGTGCACACGGACGACGTGTACTC
GTTTCCCACGTACTTCCGTGGCTTTCCGGTGGCGCATTCGCTCGAGAACC
TCTGTGTTGCCCCGGAAGTGACCGCTCCCTCCAAAACGGACACCTCCTTT
CTGGAGGGCGAGACGCTGTGCTTGGTGGTTCCTATCCGCGAGTACCCGAG
AGCCAGCAAGACCGACGACGATACGTGCGCGGCCCTCACCTGTCGCGAGG
CCGGTGCATGTTCGCTCGCCAAGTTCCCCACCGTGGCGCCTTTCGATCTT
CGTGACTTTCACGAGCGTGCCGTGTAG
back to top