mRNA_Ecto-sp13_S_contig11806.1557.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11806.1557.1
Unique NamemRNA_Ecto-sp13_S_contig11806.1557.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11806.1557.1 vs. uniprot
Match: A0A835Z819_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z819_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 1.520e-21
Identity = 52/78 (66.67%), Postives = 58/78 (74.36%), Query Frame = 1 
Query:    1 VVCHETGLLPVFKSFVEELFAEALVKVVFATETLAAGVNMPARATVITTLSKRIDTGIVKLNPSQLLQMGGRCAPNAL 234
            +  H  G+LP +KS VEELF   L KVVFATETLAAGVNMPAR+TVI+ LSKR DTGI+ L PSQLLQM GR     L
Sbjct:  525 IAAHHAGMLPAYKSLVEELFIANLCKVVFATETLAAGVNMPARSTVISVLSKRGDTGIMPLLPSQLLQMAGRAGRRGL 602
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BLAST of mRNA_Ecto-sp13_S_contig11806.1557.1 vs. uniprot
Match: K8YRA8_NANGC (Type iii restriction res subunit n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YRA8_NANGC)

HSP 1 Score: 95.1 bits (235), Expect = 1.970e-21
Identity = 50/69 (72.46%), Postives = 57/69 (82.61%), Query Frame = 1 
Query:   10 HETGLLPVFKSFVEELFAEALVKVVFATETLAAGVNMPARATVITTLSKRIDTGIVKLNPSQLLQMGGR 216
            H  GLLPV+K+ VEELF E L++VVFATETLAAGVNMPARATVI+TLSK+I    + L PSQLLQM GR
Sbjct:  104 HHAGLLPVYKALVEELFNENLIRVVFATETLAAGVNMPARATVISTLSKKIGKVTINLQPSQLLQMAGR 172
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BLAST of mRNA_Ecto-sp13_S_contig11806.1557.1 vs. uniprot
Match: A0A2P2KHL0_RHIMU (DEAD-box ATP-dependent RNA helicase ISE2ic-like n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2KHL0_RHIMU)

HSP 1 Score: 95.9 bits (237), Expect = 2.790e-21
Identity = 48/72 (66.67%), Postives = 59/72 (81.94%), Query Frame = 1 
Query:    1 VVCHETGLLPVFKSFVEELFAEALVKVVFATETLAAGVNMPARATVITTLSKRIDTGIVKLNPSQLLQMGGR 216
            V  H  G LP++KSF+EELF   LVKVVFATETLAAG+NMPAR  VI++LSKRI TG ++L+P++LLQM GR
Sbjct:  103 VAAHHAGCLPLWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVISSLSKRIGTGRIQLSPNELLQMAGR 174
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BLAST of mRNA_Ecto-sp13_S_contig11806.1557.1 vs. uniprot
Match: K9S7S3_9CYAN (DSH domain protein n=2 Tax=Geitlerinema sp. PCC 7407 TaxID=1173025 RepID=K9S7S3_9CYAN)

HSP 1 Score: 95.5 bits (236), Expect = 3.830e-21
Identity = 50/72 (69.44%), Postives = 57/72 (79.17%), Query Frame = 1 
Query:    1 VVCHETGLLPVFKSFVEELFAEALVKVVFATETLAAGVNMPARATVITTLSKRIDTGIVKLNPSQLLQMGGR 216
            V  H  GLLP +K+FVEELF + LVKVVFATETLAAG+NMPAR TVI++LSKR D G   LNPS+ LQM GR
Sbjct:  359 VASHHAGLLPAWKAFVEELFQQGLVKVVFATETLAAGINMPARTTVISSLSKRTDRGHRLLNPSEFLQMAGR 430
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BLAST of mRNA_Ecto-sp13_S_contig11806.1557.1 vs. uniprot
Match: A0A200QV60_9MAGN (Helicase n=1 Tax=Macleaya cordata TaxID=56857 RepID=A0A200QV60_9MAGN)

HSP 1 Score: 95.5 bits (236), Expect = 3.860e-21
Identity = 47/72 (65.28%), Postives = 60/72 (83.33%), Query Frame = 1 
Query:    1 VVCHETGLLPVFKSFVEELFAEALVKVVFATETLAAGVNMPARATVITTLSKRIDTGIVKLNPSQLLQMGGR 216
            V  H  G LP++KSFVEELF   LVK+VFATETLAAG+NMPAR TVI++LSKR ++G ++L+P++LLQM GR
Sbjct:  446 VAAHHAGCLPLWKSFVEELFQRGLVKIVFATETLAAGINMPARTTVISSLSKRCESGRIQLSPNELLQMAGR 517
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BLAST of mRNA_Ecto-sp13_S_contig11806.1557.1 vs. uniprot
Match: W7TFJ8_9STRA (Dsh domain protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TFJ8_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 5.190e-21
Identity = 50/69 (72.46%), Postives = 57/69 (82.61%), Query Frame = 1 
Query:   10 HETGLLPVFKSFVEELFAEALVKVVFATETLAAGVNMPARATVITTLSKRIDTGIVKLNPSQLLQMGGR 216
            H  GLLPV+K+ VEELF E L++VVFATETLAAGVNMPARATVI+TLSK+I    + L PSQLLQM GR
Sbjct:  310 HHAGLLPVYKALVEELFNENLIRVVFATETLAAGVNMPARATVISTLSKKIGKVTINLQPSQLLQMAGR 378
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BLAST of mRNA_Ecto-sp13_S_contig11806.1557.1 vs. uniprot
Match: A0A4D9D0G8_9STRA (Uncharacterized protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D0G8_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 5.290e-21
Identity = 50/69 (72.46%), Postives = 57/69 (82.61%), Query Frame = 1 
Query:   10 HETGLLPVFKSFVEELFAEALVKVVFATETLAAGVNMPARATVITTLSKRIDTGIVKLNPSQLLQMGGR 216
            H  GLLPV+K+ VEELF E L++VVFATETLAAGVNMPARATVI+TLSK+I    + L PSQLLQM GR
Sbjct:  568 HHAGLLPVYKALVEELFNENLIRVVFATETLAAGVNMPARATVISTLSKKIGKVTINLQPSQLLQMAGR 636
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BLAST of mRNA_Ecto-sp13_S_contig11806.1557.1 vs. uniprot
Match: A0A7J9HH88_9ROSI (Helicase C-terminal domain-containing protein n=3 Tax=Gossypium TaxID=3633 RepID=A0A7J9HH88_9ROSI)

HSP 1 Score: 94.7 bits (234), Expect = 7.130e-21
Identity = 48/72 (66.67%), Postives = 58/72 (80.56%), Query Frame = 1 
Query:    1 VVCHETGLLPVFKSFVEELFAEALVKVVFATETLAAGVNMPARATVITTLSKRIDTGIVKLNPSQLLQMGGR 216
            V  H  G LP++KSFVEELF   LVKVVFATETLAAG+NMPAR  VI++LSKR  TG ++L+P++LLQM GR
Sbjct:  207 VAAHHAGCLPLWKSFVEELFQRGLVKVVFATETLAAGINMPARTAVISSLSKRTSTGRIQLSPNELLQMAGR 278
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BLAST of mRNA_Ecto-sp13_S_contig11806.1557.1 vs. uniprot
Match: A0A0D2SDF5_GOSRA (Uncharacterized protein n=24 Tax=Gossypium TaxID=3633 RepID=A0A0D2SDF5_GOSRA)

HSP 1 Score: 94.7 bits (234), Expect = 7.190e-21
Identity = 48/72 (66.67%), Postives = 58/72 (80.56%), Query Frame = 1 
Query:    1 VVCHETGLLPVFKSFVEELFAEALVKVVFATETLAAGVNMPARATVITTLSKRIDTGIVKLNPSQLLQMGGR 216
            V  H  G LP++KSFVEELF   LVKVVFATETLAAG+NMPAR  VI++LSKR  TG ++L+P++LLQM GR
Sbjct:  511 VAAHHAGCLPLWKSFVEELFQRGLVKVVFATETLAAGINMPARTAVISSLSKRTSTGRIQLSPNELLQMAGR 582
[Close]
BLAST of mRNA_Ecto-sp13_S_contig11806.1557.1 vs. uniprot
Match: K9RM06_9CYAN (Superfamily II RNA helicase n=2 Tax=Nostocales TaxID=1161 RepID=K9RM06_9CYAN)

HSP 1 Score: 94.4 bits (233), Expect = 9.740e-21
Identity = 47/72 (65.28%), Postives = 57/72 (79.17%), Query Frame = 1 
Query:    1 VVCHETGLLPVFKSFVEELFAEALVKVVFATETLAAGVNMPARATVITTLSKRIDTGIVKLNPSQLLQMGGR 216
            +  H  G+LP +K+ VEELF + L+KVVFATETLAAG+NMPAR TVI+TLSKR D+G   LNPS+ LQM GR
Sbjct:  322 IAAHHAGILPAWKTLVEELFQQGLIKVVFATETLAAGINMPARTTVISTLSKRTDSGHRLLNPSEFLQMAGR 393
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11806.1557.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z819_9STRA1.520e-2166.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
K8YRA8_NANGC1.970e-2172.46Type iii restriction res subunit n=1 Tax=Nannochlo... [more]
A0A2P2KHL0_RHIMU2.790e-2166.67DEAD-box ATP-dependent RNA helicase ISE2ic-like n=... [more]
K9S7S3_9CYAN3.830e-2169.44DSH domain protein n=2 Tax=Geitlerinema sp. PCC 74... [more]
A0A200QV60_9MAGN3.860e-2165.28Helicase n=1 Tax=Macleaya cordata TaxID=56857 RepI... [more]
W7TFJ8_9STRA5.190e-2172.46Dsh domain protein n=1 Tax=Nannochloropsis gaditan... [more]
A0A4D9D0G8_9STRA5.290e-2172.46Uncharacterized protein n=3 Tax=Monodopsidaceae Ta... [more]
A0A7J9HH88_9ROSI7.130e-2166.67Helicase C-terminal domain-containing protein n=3 ... [more]
A0A0D2SDF5_GOSRA7.190e-2166.67Uncharacterized protein n=24 Tax=Gossypium TaxID=3... [more]
K9RM06_9CYAN9.740e-2165.28Superfamily II RNA helicase n=2 Tax=Nostocales Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11806contigEcto-sp13_S_contig11806:3820..4710 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeBacteria
Stop1
Start0
Seed ortholog score96.7
Seed ortholog evalue5.4e-18
Seed eggNOG ortholog1173025.GEI7407_1534
Preferred namehelY
Model size243
KEGG koko:K03727
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006401,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009056,GO:0009057,GO:0009987,GO:0016020,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019439,GO:0030312,GO:0034641,GO:0034655,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046700,GO:0070035,GO:0071704,GO:0071944,GO:0090304,GO:0140098,GO:1901360,GO:1901361,GO:1901575
Exons2
EggNOG free text desc.Superfamily II RNA helicase
EggNOG OGs1G1R1@1117,1H764@1150,COG4581@1,COG4581@2
Cds size243
COG Functional cat.L
Best tax levelOscillatoriales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462623.079396-CDS-Ecto-sp13_S_contig11806:3819..38971681462623.079396-CDS-Ecto-sp13_S_contig11806:3819..3897Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11806 3820..3897 +
1681462623.0948043-CDS-Ecto-sp13_S_contig11806:4545..47101681462623.0948043-CDS-Ecto-sp13_S_contig11806:4545..4710Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11806 4546..4710 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11806.1557.1prot_Ecto-sp13_S_contig11806.1557.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11806 3820..4710 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11806.1557.1

>prot_Ecto-sp13_S_contig11806.1557.1 ID=prot_Ecto-sp13_S_contig11806.1557.1|Name=mRNA_Ecto-sp13_S_contig11806.1557.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=81bp
VVCHETGLLPVFKSFVEELFAEALVKVVFATETLAAGVNMPARATVITTL
SKRIDTGIVKLNPSQLLQMGGRCAPNALIF*
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mRNA from alignment at Ecto-sp13_S_contig11806:3820..4710+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11806.1557.1 ID=mRNA_Ecto-sp13_S_contig11806.1557.1|Name=mRNA_Ecto-sp13_S_contig11806.1557.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=891bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11806:3820..4710+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGTGTGCCACGAGACAGGTCTGCTTCCGGTATTCAAGTCTTTCGTGGA
GGAGCTCTTCGCCGAAGCACTCGTGAAGGTGACTACTAGTGGTGAATCCA
CGGACCCCCCCCCATTTTTACGATCACCCCTCTCTTTTTGGTGTGGTGGG
GCGCAGTGATGTTCTCGGCGTTTTTGGTGGCCTGGCGTGTTGTGCACGGT
GACTTCGTGTTACGTGTTCGCCTACGGAAGTGTGTTTCGAGTTTGAGTCG
GCGAGGAAGCCCTCAATTCAGGCGAGGGTGCCGCGCGGTGCCGCAAAAGC
CCCCGTTCCCTGAGATATGGAGGAACCGTTTGGCTGAATACTTGACAAAG
GTTTGCATTTCCTTCTTGCACTTCTCTGGGAAAACAGACCGAGTGTTTCC
CCTTGCTAAGGACCATCCTTTCCACTTGACCTGCCTTTTTTTTATGAGTG
AAAACGAGTTGAGACGGTTGTTGGATACCATACAGTCCTGTTCCTATGCG
ATCCACTTTTTCTCTTAGCCGGGATGCTCCACATTCATGGGGGCGCGACC
ATGGTTTGCACTACGCAATGTCAACCGTGGATGTCATAACGTAAGCGACT
ACTGCCGGAGCGGTCAGGCACTATTCAAAGGTTACATTGTCGCCTTCCTA
AGATGTGTTGCGCGTTCAATTTGTCCGTGCTTCGGAGCTAACTACTCTTT
CCTCCTTTCGTCCTGGGGCTATTCAGGTGGTGTTTGCGACGGAGACGCTA
GCCGCCGGCGTGAATATGCCCGCAAGGGCCACCGTCATCACCACCCTCTC
CAAACGCATCGACACCGGTATCGTCAAGCTCAACCCCTCCCAGCTGCTGC
AGATGGGCGGCCGGTGCGCACCGAACGCACTCATCTTTTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11806:3820..4710+

>mRNA_Ecto-sp13_S_contig11806.1557.1 ID=mRNA_Ecto-sp13_S_contig11806.1557.1|Name=mRNA_Ecto-sp13_S_contig11806.1557.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=243bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11806:3820..4710+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGTGTGCCACGAGACAGGTCTGCTTCCGGTATTCAAGTCTTTCGTGGA
GGAGCTCTTCGCCGAAGCACTCGTGAAGGTGGTGTTTGCGACGGAGACGC
TAGCCGCCGGCGTGAATATGCCCGCAAGGGCCACCGTCATCACCACCCTC
TCCAAACGCATCGACACCGGTATCGTCAAGCTCAACCCCTCCCAGCTGCT
GCAGATGGGCGGCCGGTGCGCACCGAACGCACTCATCTTTTAG
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