mRNA_Ecto-sp13_S_contig11793.1541.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11793.1541.1
Unique NamemRNA_Ecto-sp13_S_contig11793.1541.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11793.1541.1 vs. uniprot
Match: A0A6H5J7Z7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7Z7_9PHAE)

HSP 1 Score: 572 bits (1475), Expect = 1.090e-191
Identity = 590/643 (91.76%), Postives = 600/643 (93.31%), Query Frame = 1 
Query:   22 MKGPRCVVEGCESVASRAPPGGTAGVVCIQHSQPGMVNLVNWTQCSGSNCGKYPTYGVEGTSNREYCREHALSGMVDVHRKKCVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCRFSSQEEGDCESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLFGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVADVVSAAPLAPDSTQITEKRNMKPNPSERPVDLKRVKRNPEGIELPGFSLSGDAPAVTPATGRLDLRAVAATPAVLTTFSSTXXXXXXXXXXXXXXXXXXXXXXXXXARGVAMTTVAVGGLETAGRARVLEAAPRGATGDTKSAMTFQFFPGSSGGSTGLTVGLRTAQQGGLGASRAGQGSGEVSVVHNGGIVAGAVADYQGKHGGGVAPAAFRGQGADGTGNVAASHGVARGAVGATSLGNNSGFSALHGQAGGGEAGSSASVFPPGASEIPVHGGAMGRGGEGGGAAAAIGVLPSSQPPGGDGGEAMRPAAEGDVDGGVVVPHRT-GVSV 1947
            MKGPRCVVEGCESVASRAPPG TAGVVCIQHSQPGMVNLVNWTQCSGSNCGKYPTYGVEGTSNREYCREHALSGMVDVHRKK   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RFSSQEEGDCE XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLFG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVADVV+AA LAPDSTQ TEK+ MKPNPSERPVD KRVKRNP+ IELPGFSLSGD PAV PATG LD+RAVAATPAVLTTF+ST  XXXXXXXXXXXXXXXXXXXX   ARGVAMTTVAVGG+ETAGRARVLEAAPRGATGDTKSAMTFQFFPGSSGGST +T GLRTAQQGGLGASRA  GS EVS VHNGG+VAG VADYQGKHGGG APAAFRGQGADGTGNVAASHGVARG VGATSLGNNSG SALHGQ GGGEAGSSASVFP G  EIPVHGGAMG G EG   AAAIGVLPSSQPPGG+GG+AM PAAEGDV GGVVVPH T GVSV
Sbjct:    1 MKGPRCVVEGCESVASRAPPGSTAGVVCIQHSQPGMVNLVNWTQCSGSNCGKYPTYGVEGTSNREYCREHALSGMVDVHRKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRFSSQEEGDCEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVADVVAAASLAPDSTQSTEKQEMKPNPSERPVDPKRVKRNPDSIELPGFSLSGDPPAVAPATGPLDVRAVAATPAVLTTFASTAAXXXXXXXXXXXXXXXXXXXX---ARGVAMTTVAVGGVETAGRARVLEAAPRGATGDTKSAMTFQFFPGSSGGSTEMTAGLRTAQQGGLGASRARHGSSEVSAVHNGGVVAGVVADYQGKHGGGGAPAAFRGQGADGTGNVAASHGVARGVVGATSLGNNSGSSALHGQVGGGEAGSSASVFPQGGGEIPVHGGAMGGGVEGXXXAAAIGVLPSSQPPGGEGGKAMCPAAEGDVSGGVVVPHSTTGVSV 640
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BLAST of mRNA_Ecto-sp13_S_contig11793.1541.1 vs. uniprot
Match: D7G0R4_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0R4_ECTSI)

HSP 1 Score: 187 bits (475), Expect = 9.690e-50
Identity = 127/132 (96.21%), Postives = 128/132 (96.97%), Query Frame = 1 
Query:   22 MKGPRCVVEGCESVASRAPPGGTAGVVCIQHSQPGMVNLVNWTQCSGSNCGKYPTYGVEGTSNREYCREHALSGMVDVHRKKCVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCRFSSQEEGDCE 417
            MKGPRCVVEGCESVASRAPPGGTAG+VCIQHSQPGMVNLVNWTQCSGSNCGKYPTYGVEGTSNREYCREHALSGMVDVHRKK   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RFSSQEEGDCE
Sbjct:    1 MKGPRCVVEGCESVASRAPPGGTAGIVCIQHSQPGMVNLVNWTQCSGSNCGKYPTYGVEGTSNREYCREHALSGMVDVHRKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRFSSQEEGDCE 132
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11793.1541.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J7Z7_9PHAE1.090e-19191.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0R4_ECTSI9.690e-5096.21EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11793contigEcto-sp13_S_contig11793:1622..4257 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2636
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionEsV-1-7 domain protein
Ec32 orthologEc-20_001290.1
Cds size1929
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462621.4200428-UTR-Ecto-sp13_S_contig11793:1621..16421681462621.4200428-UTR-Ecto-sp13_S_contig11793:1621..1642Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11793 1622..1642 +
1681462621.4416208-UTR-Ecto-sp13_S_contig11793:3571..42571681462621.4416208-UTR-Ecto-sp13_S_contig11793:3571..4257Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11793 3572..4257 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462621.4297314-CDS-Ecto-sp13_S_contig11793:1642..35711681462621.4297314-CDS-Ecto-sp13_S_contig11793:1642..3571Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11793 1643..3571 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11793.1541.1prot_Ecto-sp13_S_contig11793.1541.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11793 1643..3571 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11793.1541.1

>prot_Ecto-sp13_S_contig11793.1541.1 ID=prot_Ecto-sp13_S_contig11793.1541.1|Name=mRNA_Ecto-sp13_S_contig11793.1541.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=643bp
MKGPRCVVEGCESVASRAPPGGTAGVVCIQHSQPGMVNLVNWTQCSGSNC
GKYPTYGVEGTSNREYCREHALSGMVDVHRKKCVVENCPTRASHGVKGSG
KRQYCAMHAAEGMSDVGQKLCRFSSQEEGDCESIARYGVRGSKKREFCSQ
HSPEWMVNLNDKLCLFGDCFRLPTYGQRGTKVRQYCSQHAPSGTVNVTHR
LCAEPSCTSQPTYGNPGSRKREFCRRHALEGMTDLAHKTCAHAGCKKHPK
YGVQGSNRREFCSQHAKRGMVHLGNKKCMQRGCQLRPDHGNPGTKKPEFC
SQHKKQGMVKVADVVSAAPLAPDSTQITEKRNMKPNPSERPVDLKRVKRN
PEGIELPGFSLSGDAPAVTPATGRLDLRAVAATPAVLTTFSSTAASGASS
AAAVAAAAAAAAAAAVAAARGVAMTTVAVGGLETAGRARVLEAAPRGATG
DTKSAMTFQFFPGSSGGSTGLTVGLRTAQQGGLGASRAGQGSGEVSVVHN
GGIVAGAVADYQGKHGGGVAPAAFRGQGADGTGNVAASHGVARGAVGATS
LGNNSGFSALHGQAGGGEAGSSASVFPPGASEIPVHGGAMGRGGEGGGAA
AAIGVLPSSQPPGGDGGEAMRPAAEGDVDGGVVVPHRTGVSV*
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mRNA from alignment at Ecto-sp13_S_contig11793:1622..4257+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11793.1541.1 ID=mRNA_Ecto-sp13_S_contig11793.1541.1|Name=mRNA_Ecto-sp13_S_contig11793.1541.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2636bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11793:1622..4257+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTGCCCCCCGACGAGCGCGATGAAAGGCCCCCGCTGTGTCGTTGAGGG
CTGCGAGTCCGTCGCCAGTCGAGCCCCCCCCGGCGGTACCGCTGGGGTCG
TCTGCATCCAGCACTCGCAGCCGGGGATGGTGAACTTGGTCAACTGGACG
CAGTGCTCGGGTTCGAACTGCGGGAAGTACCCTACCTACGGGGTAGAGGG
GACCAGCAACCGGGAGTATTGCCGGGAGCATGCGTTGTCCGGGATGGTGG
ACGTGCACCGCAAGAAGTGCGTAGTCGAGAACTGCCCCACGCGAGCATCG
CACGGGGTGAAGGGCTCGGGGAAGCGGCAGTACTGTGCGATGCACGCGGC
GGAAGGCATGTCGGACGTCGGGCAGAAGTTATGCCGCTTCAGCAGTCAGG
AGGAAGGGGACTGCGAGTCTATCGCGCGCTACGGGGTCCGCGGCAGCAAG
AAGCGGGAGTTCTGCTCCCAGCACTCTCCTGAGTGGATGGTGAACTTGAA
TGACAAGCTGTGCCTCTTCGGCGACTGCTTTAGGCTTCCCACGTACGGGC
AGCGGGGGACCAAGGTGCGGCAGTACTGCTCTCAGCACGCTCCCTCGGGT
ACCGTGAACGTGACCCACAGGCTCTGCGCCGAGCCGTCGTGCACGAGCCA
GCCGACCTACGGGAACCCGGGGAGCCGGAAGCGCGAGTTCTGCCGCCGGC
ACGCGCTCGAGGGAATGACCGACTTGGCTCACAAGACTTGTGCCCATGCC
GGGTGCAAGAAACACCCCAAGTACGGGGTCCAGGGCAGCAACCGGCGAGA
GTTCTGTTCCCAGCACGCGAAGCGAGGTATGGTGCACTTGGGGAACAAGA
AGTGCATGCAGCGGGGTTGCCAGCTGCGCCCCGACCACGGCAACCCCGGG
ACAAAGAAGCCGGAGTTCTGCTCCCAGCACAAGAAGCAAGGTATGGTCAA
GGTGGCTGACGTGGTCTCGGCCGCTCCCCTCGCGCCAGACAGCACGCAGA
TTACAGAGAAGCGGAACATGAAGCCGAACCCCTCTGAACGCCCCGTCGAT
CTTAAAAGGGTAAAGCGCAATCCGGAGGGCATAGAATTGCCCGGTTTCTC
GTTGTCAGGAGATGCACCGGCGGTTACACCGGCAACCGGACGTCTGGATT
TGCGCGCGGTGGCCGCTACACCTGCCGTTCTCACAACGTTTTCTTCCACT
GCTGCCTCCGGAGCTTCTTCCGCTGCTGCTGTTGCTGCGGCGGCGGCGGC
GGCGGCGGCGGCGGCCGTAGCCGCGGCACGGGGGGTGGCGATGACGACGG
TTGCGGTGGGGGGATTAGAAACGGCGGGCAGAGCGAGGGTGTTGGAAGCG
GCACCAAGGGGGGCAACTGGCGATACAAAGAGCGCCATGACCTTTCAGTT
TTTCCCGGGAAGCAGCGGGGGAAGCACTGGATTGACCGTAGGGCTCAGGA
CGGCACAACAAGGTGGCCTCGGTGCCTCGCGGGCTGGTCAAGGCAGCGGT
GAGGTGTCCGTTGTGCACAACGGAGGTATTGTTGCTGGAGCCGTTGCCGA
CTACCAAGGCAAGCACGGCGGAGGAGTCGCGCCCGCCGCTTTCAGGGGGC
AAGGAGCTGATGGTACTGGGAACGTGGCCGCTTCGCATGGAGTAGCACGA
GGCGCTGTTGGTGCAACCAGTCTCGGCAACAACAGCGGATTCTCCGCGCT
GCATGGGCAAGCAGGGGGCGGCGAAGCAGGAAGCAGTGCTAGCGTTTTTC
CTCCGGGCGCGAGCGAAATCCCTGTTCACGGGGGGGCAATGGGAAGGGGT
GGAGAAGGAGGGGGCGCTGCGGCTGCGATCGGTGTTCTCCCGTCGTCGCA
GCCGCCGGGGGGGGACGGCGGCGAAGCGATGCGCCCGGCTGCGGAAGGAG
ACGTGGACGGCGGGGTTGTTGTCCCCCACCGTACAGGAGTGTCGGTTTGA
GTGATGAACGACAGCTAGCTGAGGTGTCCTACTTGATCCTCTTTCCATGA
TCGGACGCTCCGAGCCGAGCAAGTTTTGGCGTTTGGGGTCTAATTGTGAC
CGTGTGTGATTGACTGATGGTGCATTTTTTTAATTTTGTGAAAACACACA
GGAAAAAAGGATGTTTGTATCTCTACTCCGGGGTCATCGACGACCAGGAA
GCCGTGCTTTTTGGGCGAGGTAACTTGGTGGCGCGACCGCTTGACGTCAT
TCACTGTGCTTGACGTTACGCTGTCGCAGTCAAGCTTGGTGTTTAGATTG
GGCAGGAAGCGAGGAGAAGGGAGAAGTGGGCGTAGAAGTTGGGGGCAAGT
CTGCAACATGTTTGCACTCTTCGGCGCGTGTGTAAAGGCGTAAAAAAGAA
ACGCAGTCTTACGAACAAGGGAGGTGTTCTCCACGGTTTCGCCTGCGGTT
TAGGTTCCGGCTCCGTTGTGGTCGAACCCAAGGGTTGCCCATGCCCTGAG
CTCGTGCTCACACTTCATCGCCACCGCGGATATCGCTTCCTCGCCTTGCT
GATGACATCGTTTTCTCTGTCACTGGCGATTTTTTTTTCGGCGCGGAATC
GCCGTCAATATTCCTCTCTTGACCAGTACGCACGTTGGAGGAAACAAGGT
TACGCGCGATAAGCAAGCCGAGACGCAAACACGGCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11793:1622..4257+

>mRNA_Ecto-sp13_S_contig11793.1541.1 ID=mRNA_Ecto-sp13_S_contig11793.1541.1|Name=mRNA_Ecto-sp13_S_contig11793.1541.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1929bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11793:1622..4257+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAAGGCCCCCGCTGTGTCGTTGAGGGCTGCGAGTCCGTCGCCAGTCG
AGCCCCCCCCGGCGGTACCGCTGGGGTCGTCTGCATCCAGCACTCGCAGC
CGGGGATGGTGAACTTGGTCAACTGGACGCAGTGCTCGGGTTCGAACTGC
GGGAAGTACCCTACCTACGGGGTAGAGGGGACCAGCAACCGGGAGTATTG
CCGGGAGCATGCGTTGTCCGGGATGGTGGACGTGCACCGCAAGAAGTGCG
TAGTCGAGAACTGCCCCACGCGAGCATCGCACGGGGTGAAGGGCTCGGGG
AAGCGGCAGTACTGTGCGATGCACGCGGCGGAAGGCATGTCGGACGTCGG
GCAGAAGTTATGCCGCTTCAGCAGTCAGGAGGAAGGGGACTGCGAGTCTA
TCGCGCGCTACGGGGTCCGCGGCAGCAAGAAGCGGGAGTTCTGCTCCCAG
CACTCTCCTGAGTGGATGGTGAACTTGAATGACAAGCTGTGCCTCTTCGG
CGACTGCTTTAGGCTTCCCACGTACGGGCAGCGGGGGACCAAGGTGCGGC
AGTACTGCTCTCAGCACGCTCCCTCGGGTACCGTGAACGTGACCCACAGG
CTCTGCGCCGAGCCGTCGTGCACGAGCCAGCCGACCTACGGGAACCCGGG
GAGCCGGAAGCGCGAGTTCTGCCGCCGGCACGCGCTCGAGGGAATGACCG
ACTTGGCTCACAAGACTTGTGCCCATGCCGGGTGCAAGAAACACCCCAAG
TACGGGGTCCAGGGCAGCAACCGGCGAGAGTTCTGTTCCCAGCACGCGAA
GCGAGGTATGGTGCACTTGGGGAACAAGAAGTGCATGCAGCGGGGTTGCC
AGCTGCGCCCCGACCACGGCAACCCCGGGACAAAGAAGCCGGAGTTCTGC
TCCCAGCACAAGAAGCAAGGTATGGTCAAGGTGGCTGACGTGGTCTCGGC
CGCTCCCCTCGCGCCAGACAGCACGCAGATTACAGAGAAGCGGAACATGA
AGCCGAACCCCTCTGAACGCCCCGTCGATCTTAAAAGGGTAAAGCGCAAT
CCGGAGGGCATAGAATTGCCCGGTTTCTCGTTGTCAGGAGATGCACCGGC
GGTTACACCGGCAACCGGACGTCTGGATTTGCGCGCGGTGGCCGCTACAC
CTGCCGTTCTCACAACGTTTTCTTCCACTGCTGCCTCCGGAGCTTCTTCC
GCTGCTGCTGTTGCTGCGGCGGCGGCGGCGGCGGCGGCGGCGGCCGTAGC
CGCGGCACGGGGGGTGGCGATGACGACGGTTGCGGTGGGGGGATTAGAAA
CGGCGGGCAGAGCGAGGGTGTTGGAAGCGGCACCAAGGGGGGCAACTGGC
GATACAAAGAGCGCCATGACCTTTCAGTTTTTCCCGGGAAGCAGCGGGGG
AAGCACTGGATTGACCGTAGGGCTCAGGACGGCACAACAAGGTGGCCTCG
GTGCCTCGCGGGCTGGTCAAGGCAGCGGTGAGGTGTCCGTTGTGCACAAC
GGAGGTATTGTTGCTGGAGCCGTTGCCGACTACCAAGGCAAGCACGGCGG
AGGAGTCGCGCCCGCCGCTTTCAGGGGGCAAGGAGCTGATGGTACTGGGA
ACGTGGCCGCTTCGCATGGAGTAGCACGAGGCGCTGTTGGTGCAACCAGT
CTCGGCAACAACAGCGGATTCTCCGCGCTGCATGGGCAAGCAGGGGGCGG
CGAAGCAGGAAGCAGTGCTAGCGTTTTTCCTCCGGGCGCGAGCGAAATCC
CTGTTCACGGGGGGGCAATGGGAAGGGGTGGAGAAGGAGGGGGCGCTGCG
GCTGCGATCGGTGTTCTCCCGTCGTCGCAGCCGCCGGGGGGGGACGGCGG
CGAAGCGATGCGCCCGGCTGCGGAAGGAGACGTGGACGGCGGGGTTGTTG
TCCCCCACCGTACAGGAGTGTCGGTTTGA
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