mRNA_Ecto-sp13_S_contig11754.1509.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11754.1509.1
Unique NamemRNA_Ecto-sp13_S_contig11754.1509.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11754.1509.1 vs. uniprot
Match: D7G6C8_ECTSI (L51_S25_CI-B8 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6C8_ECTSI)

HSP 1 Score: 176 bits (445), Expect = 6.550e-54
Identity = 84/86 (97.67%), Postives = 85/86 (98.84%), Query Frame = 2 
Query:  263 MAWRASLSRNVRELRFCCCNISQSGAPVREFFRTNYAELKTLNPGFPILLREGTGADPYLLATYDFGVEHRLSLSGLSQENIAKEV 520
            MAWRASLSRNVRELRFCCCNISQSGAPVREFFRTNYAELK LNPGFPILLREGTGADPYLLATYD+GVEHRLSLSGLSQENIAKEV
Sbjct:    1 MAWRASLSRNVRELRFCCCNISQSGAPVREFFRTNYAELKALNPGFPILLREGTGADPYLLATYDYGVEHRLSLSGLSQENIAKEV 86
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BLAST of mRNA_Ecto-sp13_S_contig11754.1509.1 vs. uniprot
Match: I1IWN0_BRADI (L51_S25_CI-B8 domain-containing protein n=1 Tax=Brachypodium distachyon TaxID=15368 RepID=I1IWN0_BRADI)

HSP 1 Score: 100 bits (248), Expect = 2.440e-24
Identity = 47/90 (52.22%), Postives = 62/90 (68.89%), Query Frame = 2 
Query:  263 MAWRASLSRNVRELRFCCCNISQSGAPVREFFRTNYAELKTLNPGFPILLREGTGADPYLLATYDFGVEHRLSLSGLSQENIAKEVRGFA 532
            MAWRASLSR+V+E+RF  C  S + AP REF + NYA++KT NP  P L+RE +G +P L A YD GVE  +SL GL++  I K++   A
Sbjct:    1 MAWRASLSRSVKEIRFLFCQSSPASAPAREFVKKNYADIKTSNPSLPFLVRECSGVEPQLWARYDMGVERCVSLGGLTEAQIDKKLEDLA 90
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BLAST of mRNA_Ecto-sp13_S_contig11754.1509.1 vs. uniprot
Match: A0A0D6R4M3_ARACU (L51_S25_CI-B8 domain-containing protein n=2 Tax=Araucariaceae TaxID=25664 RepID=A0A0D6R4M3_ARACU)

HSP 1 Score: 99.4 bits (246), Expect = 6.300e-24
Identity = 45/86 (52.33%), Postives = 62/86 (72.09%), Query Frame = 2 
Query:  263 MAWRASLSRNVRELRFCCCNISQSGAPVREFFRTNYAELKTLNPGFPILLREGTGADPYLLATYDFGVEHRLSLSGLSQENIAKEV 520
            MAWRA LSRN++ELR   C +S S A  R+F R+NY +LKTLNP FPIL+RE +G +P + A Y +G+E  ++L GL++  I K+V
Sbjct:    1 MAWRAQLSRNLKELRIHLCQVSPSSAATRDFIRSNYKDLKTLNPKFPILIRECSGIEPRIWARYQYGIEKSVALDGLTEGQITKKV 86
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BLAST of mRNA_Ecto-sp13_S_contig11754.1509.1 vs. uniprot
Match: A0A453BS07_AEGTS (L51_S25_CI-B8 domain-containing protein n=7 Tax=Triticeae TaxID=147389 RepID=A0A453BS07_AEGTS)

HSP 1 Score: 96.7 bits (239), Expect = 5.540e-23
Identity = 45/90 (50.00%), Postives = 59/90 (65.56%), Query Frame = 2 
Query:  263 MAWRASLSRNVRELRFCCCNISQSGAPVREFFRTNYAELKTLNPGFPILLREGTGADPYLLATYDFGVEHRLSLSGLSQENIAKEVRGFA 532
            MAWRASLSRNV+E+RF  C  S +  P REF + NY ++KT NP  P+L+RE +G  P L A YD GVE  + L GL++  I K++   A
Sbjct:    1 MAWRASLSRNVKEIRFLFCQSSPASGPAREFVKKNYGDIKTRNPTLPVLIRECSGVQPQLWARYDMGVERCVRLDGLTEAQIDKKLEELA 90
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BLAST of mRNA_Ecto-sp13_S_contig11754.1509.1 vs. uniprot
Match: W1PFD0_AMBTC (L51_S25_CI-B8 domain-containing protein n=1 Tax=Amborella trichopoda TaxID=13333 RepID=W1PFD0_AMBTC)

HSP 1 Score: 96.7 bits (239), Expect = 6.370e-23
Identity = 46/86 (53.49%), Postives = 59/86 (68.60%), Query Frame = 2 
Query:  263 MAWRASLSRNVRELRFCCCNISQSGAPVREFFRTNYAELKTLNPGFPILLREGTGADPYLLATYDFGVEHRLSLSGLSQENIAKEV 520
            MAWR  LSRN++ELR   C  S + A  REF + NY +LKTLNP FPIL+RE +G +P L A YDFGVE  + L GL++  I K++
Sbjct:    1 MAWRGHLSRNLKELRVLFCQTSPASASTREFVQRNYTDLKTLNPTFPILVRECSGVEPQLWARYDFGVERCVRLEGLTETQITKKL 86
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BLAST of mRNA_Ecto-sp13_S_contig11754.1509.1 vs. uniprot
Match: A0A3S3MVY3_9MAGN (NADH dehydrogenase ubiquinone 1 alpha subcomplex subunit 2 n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A3S3MVY3_9MAGN)

HSP 1 Score: 96.7 bits (239), Expect = 6.370e-23
Identity = 45/86 (52.33%), Postives = 59/86 (68.60%), Query Frame = 2 
Query:  263 MAWRASLSRNVRELRFCCCNISQSGAPVREFFRTNYAELKTLNPGFPILLREGTGADPYLLATYDFGVEHRLSLSGLSQENIAKEV 520
            MAWR  LSRN++ELRF  C  S + A  REF   NY +LKTLNP FPIL+RE +G DP + A YD GVE  + L GL++  I++++
Sbjct:    1 MAWRGHLSRNLKELRFLFCQTSPASAQAREFVHRNYKDLKTLNPKFPILIRECSGVDPQIWARYDMGVERCVHLDGLTEAQISRKL 86
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BLAST of mRNA_Ecto-sp13_S_contig11754.1509.1 vs. uniprot
Match: A0A5J5APT5_9ASTE (L51_S25_CI-B8 domain-containing protein n=1 Tax=Nyssa sinensis TaxID=561372 RepID=A0A5J5APT5_9ASTE)

HSP 1 Score: 95.5 bits (236), Expect = 1.800e-22
Identity = 45/86 (52.33%), Postives = 56/86 (65.12%), Query Frame = 2 
Query:  263 MAWRASLSRNVRELRFCCCNISQSGAPVREFFRTNYAELKTLNPGFPILLREGTGADPYLLATYDFGVEHRLSLSGLSQENIAKEV 520
            MAWR  LSRN++ELR C C  S + +  R F   NY +LKTLNP FPIL+RE  G +P L A YD GVE  + L GL++  I+K V
Sbjct:    1 MAWRGHLSRNLKELRICFCQTSPASSSARAFIERNYKDLKTLNPKFPILIRECNGIEPQLWARYDMGVERGIRLEGLTEVQISKAV 86
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BLAST of mRNA_Ecto-sp13_S_contig11754.1509.1 vs. uniprot
Match: A0A0A0LDA2_CUCSA (L51_S25_CI-B8 domain-containing protein n=10 Tax=Cucurbitaceae TaxID=3650 RepID=A0A0A0LDA2_CUCSA)

HSP 1 Score: 94.7 bits (234), Expect = 3.310e-22
Identity = 45/86 (52.33%), Postives = 56/86 (65.12%), Query Frame = 2 
Query:  263 MAWRASLSRNVRELRFCCCNISQSGAPVREFFRTNYAELKTLNPGFPILLREGTGADPYLLATYDFGVEHRLSLSGLSQENIAKEV 520
            MAWR  LS+N++ELR   C  S S AP R F   NY +LKTLNP FPIL+RE +G +P L A YD G+E    L GLS+  I+K +
Sbjct:    1 MAWRGKLSKNLKELRILLCQSSPSSAPARAFVEKNYKDLKTLNPKFPILIRECSGIEPQLWARYDMGIERVARLEGLSEAQISKAL 86
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BLAST of mRNA_Ecto-sp13_S_contig11754.1509.1 vs. uniprot
Match: UPI0001982B0E (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 n=2 Tax=Vitis TaxID=3603 RepID=UPI0001982B0E)

HSP 1 Score: 94.7 bits (234), Expect = 3.600e-22
Identity = 46/90 (51.11%), Postives = 56/90 (62.22%), Query Frame = 2 
Query:  263 MAWRASLSRNVRELRFCCCNISQSGAPVREFFRTNYAELKTLNPGFPILLREGTGADPYLLATYDFGVEHRLSLSGLSQENIAKEVRGFA 532
            MAWR  LSRN++ELR   C  S + +  R F   NY +LKTLNP FPIL+RE  G  P L A YD GVE  + L GL++E I+K V   A
Sbjct:    1 MAWRGQLSRNLKELRILFCQTSPASSSARAFVERNYKDLKTLNPKFPILIRECNGTRPQLWARYDMGVERGIHLEGLTEEQISKAVEDLA 90
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BLAST of mRNA_Ecto-sp13_S_contig11754.1509.1 vs. uniprot
Match: A0A6P5ZTD2_DURZI (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2-like n=1 Tax=Durio zibethinus TaxID=66656 RepID=A0A6P5ZTD2_DURZI)

HSP 1 Score: 94.4 bits (233), Expect = 5.100e-22
Identity = 44/87 (50.57%), Postives = 57/87 (65.52%), Query Frame = 2 
Query:  263 MAWRASLSRNVRELRFCCCNISQSGAPVREFFRTNYAELKTLNPGFPILLREGTGADPYLLATYDFGVEHRLSLSGLSQENIAKEVR 523
            MAWR+ LSRN++ELR   C  S S AP R F   NY +LKTLNP FPIL+RE +G +P + A YD GVE  + L G ++  I K ++
Sbjct:    1 MAWRSQLSRNLKELRILLCQTSPSSAPARLFVENNYKDLKTLNPKFPILIRECSGIEPQMWARYDMGVERGIRLEGFTEPQILKALQ 87
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11754.1509.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6C8_ECTSI6.550e-5497.67L51_S25_CI-B8 domain-containing protein n=2 Tax=Ec... [more]
I1IWN0_BRADI2.440e-2452.22L51_S25_CI-B8 domain-containing protein n=1 Tax=Br... [more]
A0A0D6R4M3_ARACU6.300e-2452.33L51_S25_CI-B8 domain-containing protein n=2 Tax=Ar... [more]
A0A453BS07_AEGTS5.540e-2350.00L51_S25_CI-B8 domain-containing protein n=7 Tax=Tr... [more]
W1PFD0_AMBTC6.370e-2353.49L51_S25_CI-B8 domain-containing protein n=1 Tax=Am... [more]
A0A3S3MVY3_9MAGN6.370e-2352.33NADH dehydrogenase ubiquinone 1 alpha subcomplex s... [more]
A0A5J5APT5_9ASTE1.800e-2252.33L51_S25_CI-B8 domain-containing protein n=1 Tax=Ny... [more]
A0A0A0LDA2_CUCSA3.310e-2252.33L51_S25_CI-B8 domain-containing protein n=10 Tax=C... [more]
UPI0001982B0E3.600e-2251.11NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
A0A6P5ZTD2_DURZI5.100e-2250.57NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11754contigEcto-sp13_S_contig11754:1246..2173 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score175.6
Seed ortholog evalue1e-41
Seed eggNOG ortholog2880.D7G6C8
Preferred nameNDUFA2
Model size535
KEGG koko:K03946
KEGG TC3.D.1.6
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00146
Hectar predicted targeting categorymitochondrion
GOsGO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007005,GO:0008137,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0010257,GO:0015980,GO:0016020,GO:0016043,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0019866,GO:0022607,GO:0022900,GO:0022904,GO:0030964,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032981,GO:0032991,GO:0033108,GO:0034622,GO:0034641,GO:0042773,GO:0042775,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0045333,GO:0046034,GO:0046483,GO:0050136,GO:0055086,GO:0055114,GO:0065003,GO:0070469,GO:0071704,GO:0071840,GO:0072521,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901360,GO:1901564,GO:1902494,GO:1990204
Exons3
EggNOG free text desc.mitochondrial respiratory chain complex I assembly
EggNOG OGsKOG3446@1,KOG3446@2759
Cds size273
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462618.9928956-CDS-Ecto-sp13_S_contig11754:1245..13251681462618.9928956-CDS-Ecto-sp13_S_contig11754:1245..1325Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11754 1246..1325 -
1681462619.0768538-CDS-Ecto-sp13_S_contig11754:1542..16491681462619.0768538-CDS-Ecto-sp13_S_contig11754:1542..1649Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11754 1543..1649 -
1681462619.091989-CDS-Ecto-sp13_S_contig11754:1825..19111681462619.091989-CDS-Ecto-sp13_S_contig11754:1825..1911Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11754 1826..1911 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462619.1006691-UTR-Ecto-sp13_S_contig11754:1911..21731681462619.1006691-UTR-Ecto-sp13_S_contig11754:1911..2173Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11754 1912..2173 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11754.1509.1prot_Ecto-sp13_S_contig11754.1509.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11754 1246..1911 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11754.1509.1

>prot_Ecto-sp13_S_contig11754.1509.1 ID=prot_Ecto-sp13_S_contig11754.1509.1|Name=mRNA_Ecto-sp13_S_contig11754.1509.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=91bp
MAWRASLSRNVRELRFCCCNISQSGAPVREFFRTNYAELKTLNPGFPILL
REGTGADPYLLATYDFGVEHRLSLSGLSQENIAKEVRGFAD
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mRNA from alignment at Ecto-sp13_S_contig11754:1246..2173-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11754.1509.1 ID=mRNA_Ecto-sp13_S_contig11754.1509.1|Name=mRNA_Ecto-sp13_S_contig11754.1509.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=928bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11754:1246..2173- (Ectocarpus species13 EcNAP12_S_4_19m)
AAGAGCAAAGATGAGTATTTCCAGCTTCATGGCGAGGGGCATGCGCGGTC
GGCCTTACCAAGTCGCTGTGCGAACTGCGAACGCGAAGAAAAATATGTGT
GTCTGCAGTAATGCGGGCCCCGCCCAGCCGAAGCCTCTTGTGCGGAACAC
CAAAATACGCCACCGCCGCAGTCGAGATGCTGTGCGCACAAGTTAACCGA
CCGGAGCGGACGCTCTCACCATTGCCTTCTACCCAATCAGCATCCACCAC
ACAACATTGCTTATGGCGTGGCGGGCCAGCCTCTCTCGCAATGTTCGAGA
GCTAAGGTTTTGCTGTTGCAATATCAGCCAAAGTGGTGCTCCAGTCCGGT
GCGTGTGAAACTCATTTGGGTCCTATGATAGAACTACTTCCAACTGTTCC
GGCTACATAGAGCACGCGCGCGATCAACCTCTTCCCTTCCTTTACATGTC
AGACAGTTTCTCTAACCGCGTTCATCGCAATTGCTGACATCGTTCTACCA
ACACGCTTCGTCGTTTCTTGGCAGAGAATTTTTCCGAACCAACTACGCTG
AACTCAAGACCTTGAACCCGGGTTTCCCTATATTGCTCCGGGAAGGGACG
GGCGCTGATCCCTATCTCCTGGCTACTTACGGTGCGTCGCGAGGCAGCCA
GCCCTTTGTCATTATGATGCGCATTGAGCGTAAAGATGAAGCTCGCTGAG
GCGTTACCTCGAGTTGCCTACGGAAGTAATTGATAGCACGAGTTATTTCT
ACGAATTCTTCCTGTGTATCATTTACATGTATACCATGCATGGACTTCCC
TCATGCCTCACACTCCGTTTCCGCCTCTTGCCTCTTCGCTCCCGTCAGAC
TTCGGAGTGGAGCATCGTCTTTCATTGAGCGGGCTTTCACAAGAGAACAT
CGCCAAGGAGGTACGTGGATTTGCTGAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11754:1246..2173-

>mRNA_Ecto-sp13_S_contig11754.1509.1 ID=mRNA_Ecto-sp13_S_contig11754.1509.1|Name=mRNA_Ecto-sp13_S_contig11754.1509.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=273bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11754:1246..2173- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGTGGCGGGCCAGCCTCTCTCGCAATGTTCGAGAGCTAAGGTTTTG
CTGTTGCAATATCAGCCAAAGTGGTGCTCCAGTCCGAGAATTTTTCCGAA
CCAACTACGCTGAACTCAAGACCTTGAACCCGGGTTTCCCTATATTGCTC
CGGGAAGGGACGGGCGCTGATCCCTATCTCCTGGCTACTTACGACTTCGG
AGTGGAGCATCGTCTTTCATTGAGCGGGCTTTCACAAGAGAACATCGCCA
AGGAGGTACGTGGATTTGCTGAT
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