mRNA_Ecto-sp13_S_contig1174.1498.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1174.1498.1 vs. uniprot
Match: D7G9D5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9D5_ECTSI) HSP 1 Score: 113 bits (283), Expect = 8.470e-28 Identity = 58/59 (98.31%), Postives = 58/59 (98.31%), Query Frame = 3
Query: 414 MPWLAVPYGETTATARLAGACKVRGTPSLAVFDGATGELLTALGAADVSDPGALADPLA 590
MPWLAVPYGET ATARLAGACKVRGTPSLAVFDGATGELLTALGAADVSDPGALADPLA
Sbjct: 1 MPWLAVPYGETAATARLAGACKVRGTPSLAVFDGATGELLTALGAADVSDPGALADPLA 59
BLAST of mRNA_Ecto-sp13_S_contig1174.1498.1 vs. uniprot
Match: A0A843U7U9_COLES (Uncharacterized protein n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843U7U9_COLES) HSP 1 Score: 72.0 bits (175), Expect = 5.800e-10 Identity = 52/128 (40.62%), Postives = 62/128 (48.44%), Query Frame = 3
Query: 162 QVTSASLHGKRTVGVLFSARWC---RGLGSKLALFYHACLQRDQDAFEARERFCFQDERSITPLSRASVVFVSNDRDARAFRAYREGMPWLAVPYGETTATARLAGACKVRGTPSLAVFDGATGELLT 536
QV +L GK TV + FSA WC R LA Y + FE VVFVS+DR+ +F Y MPWLAVP+ +T A ARL KVRG P L V DG+TG +LT
Sbjct: 68 QVEVDNLEGK-TVAIYFSAHWCGPCRRFTPNLAEAYSELAPK---GFE--------------------VVFVSSDREEDSFGGYFSEMPWLAVPFSDTDARARLKSLFKVRGIPHLVVLDGSTGRVLT 171
BLAST of mRNA_Ecto-sp13_S_contig1174.1498.1 vs. uniprot
Match: B4ZFY3_AMPCA (Nucleoredoxin (Fragment) n=1 Tax=Amphidinium carterae TaxID=2961 RepID=B4ZFY3_AMPCA) HSP 1 Score: 66.6 bits (161), Expect = 7.600e-9 Identity = 44/128 (34.38%), Postives = 60/128 (46.88%), Query Frame = 3
Query: 138 LLDTTGTLQVTSASLHGKRTVGVLFSARWC---RGLGSKLALFYHACLQRDQDAFEARERFCFQDERSITPLSRASVVFVSNDRDARAFRAYREGMPWLAVPYGETTATARLAGACKVRGTPSLAVFD 512
LL + + T+ +L GK V + FSA WC RG +LA +Y L+ VVFVS+D++ +AF Y MPWLA+PY E A L+ KV+G PSL + D
Sbjct: 5 LLAASASKVSTATALAGKSAVALYFSAHWCPPCRGFTPQLAEWYKNSLK----------------------AKGLEVVFVSSDKEEKAFNEYHAEMPWLALPYTERELKATLSKKFKVQGIPSLVILD 110
BLAST of mRNA_Ecto-sp13_S_contig1174.1498.1 vs. uniprot
Match: A0A3S3MNA2_9MAGN (Putative nucleoredoxin 1 n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A3S3MNA2_9MAGN) HSP 1 Score: 65.1 bits (157), Expect = 6.450e-8 Identity = 52/147 (35.37%), Postives = 69/147 (46.94%), Query Frame = 3
Query: 153 GTLQVTSASLHGKRTVGVLFSARWCRGLGSKLALFYHACLQR-DQDAFEARERFCFQDERSITPLSRASVVFVSNDRDARAFRAYREGMPWLAVPYGETTATARLAGACKVRGTPSLAVFDGATGELLTALGAADVSDPGALADPLA 590
G +QV A L G+ VG+ FSA WC F A + + FEA VFVS D+D +F+ Y MPWLA+P+ ++T RL KVRG P L VF G G+LL+ G A + + G A P +
Sbjct: 57 GNIQVKIADLVGE-IVGIYFSASWCGPCQRFTPTFVEAYKELYAKGDFEA--------------------VFVSTDKDEESFKEYFAKMPWLAIPFSDSTTRRRLNDLFKVRGIPHL-VFLGGNGKLLSNGGVALIKEYGVEAYPFS 181
BLAST of mRNA_Ecto-sp13_S_contig1174.1498.1 vs. uniprot
Match: A0A6T0B168_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A6T0B168_CHRCT) HSP 1 Score: 64.3 bits (155), Expect = 1.250e-7 Identity = 53/147 (36.05%), Postives = 73/147 (49.66%), Query Frame = 3
Query: 132 RALLDTTGTLQVTSASLHGKRTVGVLFSARWC---RGLGSKLALFYHACLQRDQDAFEARERFCFQDERSITPLSRASVVFVSNDRDARAFRAYREGMPWLAVPYGETTATARLAGACKVRGTPSLAVFDGATGELLTALGAADVSD 563
++L +G L T +L GK VG+ FSA WC RG L Y ++ AFE +VFVS+D+D AF Y MPWLAVP+ + A ARL+ KV+G P+L + D +G ++TA G VS+
Sbjct: 8 KSLTSASGELS-TDDALKGK-IVGLYFSAHWCPPCRGFTPALVETYKK-IKTAGKAFE--------------------IVFVSSDKDQGAFDEYFGEMPWLAVPFSDREAKARLSKKYKVQGIPTLVILD-ESGAIITADGREAVSE 130
BLAST of mRNA_Ecto-sp13_S_contig1174.1498.1 vs. uniprot
Match: A0A1X7VHN7_AMPQE (Thioredoxin domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7VHN7_AMPQE) HSP 1 Score: 61.6 bits (148), Expect = 1.600e-7 Identity = 38/113 (33.63%), Postives = 55/113 (48.67%), Query Frame = 3
Query: 198 VGVLFSARWCRGLGSKLALFYHACLQRDQDAFEARERFCFQDERSITPLSRASVVFVSNDRDARAFRAYREGMPWLAVPYGETTATARLAGACKVRGTPSLAVFDGATGELLT 536
VG+L+SA WC AC++ + E+ ++S +VF+S DRD F + + MPWLAVPY + +L+ V P+L +FDG TG LLT
Sbjct: 66 VGLLYSAYWCP-----------ACIEFTKKVARWYEKI---QQKSALGKKTLEIVFISFDRDENEFNKHFDTMPWLAVPYEDKRVCNKLSQTFHVHSIPTLLLFDGKTGTLLT 164
BLAST of mRNA_Ecto-sp13_S_contig1174.1498.1 vs. uniprot
Match: A0A0E0NWC3_ORYRU (Uncharacterized protein n=2 Tax=Oryza TaxID=4527 RepID=A0A0E0NWC3_ORYRU) HSP 1 Score: 63.9 bits (154), Expect = 2.280e-7 Identity = 46/130 (35.38%), Postives = 58/130 (44.62%), Query Frame = 3
Query: 195 TVGVLFSARWCRGLGSKLALFYHACLQRDQDAFEARERFCFQDERSITPLSRASVVFVSNDRDARAFRAYREGMPWLAVPYGETTATARLAGACKVRGTPSLAVFDGATGELLTALGAADVSDPGALADP 584
TV + FSA WC C + EA Q +R +VFVS D D AF AY MPWLAVP+ ++ A A+L KV G P L + D +GE+ T G V + G A P
Sbjct: 43 TVALYFSASWCP-----------PCRRFTPKLIEAYNELVSQGKRERA----LRIVFVSGDSDQDAFNAYFAKMPWLAVPFSDSEALAKLNERYKVMGIPHLVILDAKSGEIYTEDGVELVHEYGTEAYP 157
BLAST of mRNA_Ecto-sp13_S_contig1174.1498.1 vs. uniprot
Match: A0A0M0K094_9EUKA (Nucleoredoxin 1 n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K094_9EUKA) HSP 1 Score: 63.5 bits (153), Expect = 2.300e-7 Identity = 49/147 (33.33%), Postives = 66/147 (44.90%), Query Frame = 3
Query: 138 LLDTTGTLQVTSASLHGKRTVGVLFSARWC---RGLGSKLALFYHACLQRDQDAFEARERFCFQDERSITPLSRASVVFVSNDRDARAFRAYREGMPWLAVPYGETTATARLAGACKVRGTPSLAVFDGATGELLTALGAADV-SDP 566
L T G Q + +G+ FSA WC RG L Y +D +A+ ++FVS+DRD +AF Y MPWLA+P G+T A+L+ V G P+ + D ATGE +T G V SDP
Sbjct: 154 LSGTEGETQSLDDIKRYAKVIGMYFSAHWCPPCRGFTPSLVSAY-------KDHLKAKG---------------LEIIFVSSDRDQKAFLEYYGSMPWLAIPQGDTR-KAKLSKLFSVDGIPAFVLIDAATGETITTEGRGAVGSDP 277
BLAST of mRNA_Ecto-sp13_S_contig1174.1498.1 vs. uniprot
Match: A0A7S0GU34_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0GU34_MICPS) HSP 1 Score: 60.5 bits (145), Expect = 2.710e-7 Identity = 31/60 (51.67%), Postives = 41/60 (68.33%), Query Frame = 3
Query: 357 VVFVSNDRDARAFRAYREGMPWLAVPYGETTATARLAGACKVRGTPSLAVFDGATGELLT 536
V+FVS+DRD RAF YR+ MPWLA+P+ + A+L+ KV G PSL V D TG ++T
Sbjct: 35 VIFVSSDRDERAFDEYRDEMPWLAMPFRDRELKAKLSKTFKVTGIPSLVVLD-ETGSVIT 93
BLAST of mRNA_Ecto-sp13_S_contig1174.1498.1 vs. uniprot
Match: A0A7J6VDZ7_THATH (Thioredoxin, nucleoredoxin n=1 Tax=Thalictrum thalictroides TaxID=46969 RepID=A0A7J6VDZ7_THATH) HSP 1 Score: 63.2 bits (152), Expect = 2.950e-7 Identity = 52/139 (37.41%), Postives = 69/139 (49.64%), Query Frame = 3
Query: 138 LLDTTGTLQVTSASLHGKRTVGVLFSARWC---RGLGSKLALFYHACLQRDQDAFEARERFCFQDERSITPLSRASVVFVSNDRDARAFRAYREGMPWLAVPYGETTATARLAGACKVRGTPSLAVFDGATGELLTALG 545
LL T QVT ASL GK TVG+ FSA WC KL YH + R+ F +++ +VFVS+DR AF +Y + MPWLA+P+G++T L V+G P L + G G+ LT G
Sbjct: 194 LLAHPTTKQVTVASLVGK-TVGLYFSAEWCLPCHKFTPKLISIYH----------KIRQMFIDDMDKNF------EIVFVSSDRTQGAFASYFDTMPWLALPFGDSTIK-NLMKYFDVQGIPCLVII-GPDGKTLTKQG 313 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1174.1498.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1174.1498.1 >prot_Ecto-sp13_S_contig1174.1498.1 ID=prot_Ecto-sp13_S_contig1174.1498.1|Name=mRNA_Ecto-sp13_S_contig1174.1498.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=261bp MRRKHWTHGIYPRALLDTTGTLQVTSASLHGKRTVGVLFSARWCRGLGSKback to top mRNA from alignment at Ecto-sp13_S_contig1174:11326..14964+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1174.1498.1 ID=mRNA_Ecto-sp13_S_contig1174.1498.1|Name=mRNA_Ecto-sp13_S_contig1174.1498.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3639bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1174:11326..14964+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1174:11326..14964+ >mRNA_Ecto-sp13_S_contig1174.1498.1 ID=mRNA_Ecto-sp13_S_contig1174.1498.1|Name=mRNA_Ecto-sp13_S_contig1174.1498.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=783bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1174:11326..14964+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |