mRNA_Ecto-sp13_S_contig11733.1494.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig11733.1494.1 vs. uniprot
Match: D7FU09_ECTSI (Photolyase 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU09_ECTSI) HSP 1 Score: 121 bits (304), Expect = 2.080e-31 Identity = 57/58 (98.28%), Postives = 57/58 (98.28%), Query Frame = 1
Query: 4 GPVLVTQGVKDPLNDADGRATLFEALGPQVSVVRLDGGHCPHHEVAADVCAALSSFVQ 177
GPVLVTQGVKDPLNDADGRATLFEALGPQVSVVRLDGGHCPHHEVAADVCAALS FVQ
Sbjct: 368 GPVLVTQGVKDPLNDADGRATLFEALGPQVSVVRLDGGHCPHHEVAADVCAALSGFVQ 425
BLAST of mRNA_Ecto-sp13_S_contig11733.1494.1 vs. uniprot
Match: A0A6H5LA65_9PHAE (Photolyase/cryptochrome alpha/beta domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LA65_9PHAE) HSP 1 Score: 119 bits (297), Expect = 8.250e-30 Identity = 56/58 (96.55%), Postives = 56/58 (96.55%), Query Frame = 1
Query: 4 GPVLVTQGVKDPLNDADGRATLFEALGPQVSVVRLDGGHCPHHEVAADVCAALSSFVQ 177
GPVLVTQGVKDPLNDA GRATLFEALGPQVSVVRLDGGHCPHHEVAADVCAALS FVQ
Sbjct: 635 GPVLVTQGVKDPLNDAGGRATLFEALGPQVSVVRLDGGHCPHHEVAADVCAALSGFVQ 692
BLAST of mRNA_Ecto-sp13_S_contig11733.1494.1 vs. uniprot
Match: I2CPL0_NANGC (Alpha beta hydrolase fold protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPL0_NANGC) HSP 1 Score: 72.8 bits (177), Expect = 7.990e-14 Identity = 32/57 (56.14%), Postives = 40/57 (70.18%), Query Frame = 1
Query: 4 GPVLVTQGVKDPLNDADGRATLFEALGPQVSVVRLDGGHCPHHEVAADVCAALSSFV 174
GPVLV QG+ DPLNDA GRA L +A V VV ++GGHC H E + CAA+++FV
Sbjct: 240 GPVLVAQGILDPLNDAKGRAALLQAAWEDVEVVEIEGGHCVHDERPQETCAAMAAFV 296
BLAST of mRNA_Ecto-sp13_S_contig11733.1494.1 vs. uniprot
Match: A0A4D9CZF8_9STRA (Photolyase/cryptochrome alpha/beta domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZF8_9STRA) HSP 1 Score: 72.8 bits (177), Expect = 1.470e-13 Identity = 32/57 (56.14%), Postives = 40/57 (70.18%), Query Frame = 1
Query: 4 GPVLVTQGVKDPLNDADGRATLFEALGPQVSVVRLDGGHCPHHEVAADVCAALSSFV 174
GPVLV QG+ DPLNDA GRA L +A V VV ++GGHC H E + CAA+++FV
Sbjct: 840 GPVLVAQGILDPLNDAKGRAALLQAAWEDVEVVEIEGGHCVHDERPRETCAAMAAFV 896
BLAST of mRNA_Ecto-sp13_S_contig11733.1494.1 vs. uniprot
Match: A0A7S2UUB3_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUB3_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 7.660e-13 Identity = 30/58 (51.72%), Postives = 38/58 (65.52%), Query Frame = 1
Query: 4 GPVLVTQGVKDPLNDADGRATLFEALGPQVSVVRLDGGHCPHHEVAADVCAALSSFVQ 177
GPVLVTQG+ DPLNDA GR L + P + + GHCPHHEV +V A+ +FV+
Sbjct: 280 GPVLVTQGILDPLNDAKGRLDLLKKCYPNLEACSIQAGHCPHHEVPKEVSQAIKAFVE 337
BLAST of mRNA_Ecto-sp13_S_contig11733.1494.1 vs. uniprot
Match: A0A836C8C6_9STRA (Alpha/Beta hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8C6_9STRA) HSP 1 Score: 67.8 bits (164), Expect = 5.260e-12 Identity = 30/58 (51.72%), Postives = 39/58 (67.24%), Query Frame = 1
Query: 4 GPVLVTQGVKDPLNDADGRATLFEALGPQVSVVRLDGGHCPHHEVAADVCAALSSFVQ 177
GPVLV QG+ DPLNDA R F+ V VV + GGHCP E+A +VCAA+++F +
Sbjct: 210 GPVLVAQGLLDPLNDAKARVKQFQEAYEAVEVVPIQGGHCPQDEMAEEVCAAIAAFTR 267
BLAST of mRNA_Ecto-sp13_S_contig11733.1494.1 vs. uniprot
Match: R7QBB6_CHOCR (Photolyase/cryptochrome alpha/beta domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QBB6_CHOCR) HSP 1 Score: 65.1 bits (157), Expect = 7.610e-11 Identity = 31/57 (54.39%), Postives = 39/57 (68.42%), Query Frame = 1
Query: 4 GPVLVTQGVKDPLNDADGRATLFEALGPQVSVVRLDGGHCPHHEVAADVCAALSSFV 174
GP+LV QGV DPLNDA GRA EA P+ +VVR++ GHCPH E A A+S ++
Sbjct: 923 GPLLVFQGVLDPLNDARGRADKIEAQYPRATVVRVNSGHCPHEEDAEAFVEAISRWM 979
BLAST of mRNA_Ecto-sp13_S_contig11733.1494.1 vs. uniprot
Match: A0A835W7K4_CHLIN (Photolyase/cryptochrome alpha/beta domain-containing protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835W7K4_CHLIN) HSP 1 Score: 64.7 bits (156), Expect = 1.040e-10 Identity = 31/59 (52.54%), Postives = 36/59 (61.02%), Query Frame = 1
Query: 1 QGPVLVTQGVKDPLNDADGRATLFEALGPQVSVVRLDGGHCPHHEVAADVCAALSSFVQ 177
+GP +V QG DPLNDA+ RA L P V VV L GHCPH EV V AAL F++
Sbjct: 650 RGPAMVLQGALDPLNDAESRAKEMGQLCPNVQVVLLQAGHCPHDEVPEQVNAALLGFIR 708
BLAST of mRNA_Ecto-sp13_S_contig11733.1494.1 vs. uniprot
Match: A0A7S1GQH1_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GQH1_CYCTE) HSP 1 Score: 62.8 bits (151), Expect = 1.940e-10 Identity = 27/58 (46.55%), Postives = 38/58 (65.52%), Query Frame = 1
Query: 1 QGPVLVTQGVKDPLNDADGRATLFEALGPQVSVVRLDGGHCPHHEVAADVCAALSSFV 174
+GPVLV QG+ DPLND+ RA L L ++V ++GGHCPH E+ DV A+ ++
Sbjct: 135 RGPVLVAQGMLDPLNDSPSRAKLLGGLRSDITVTPINGGHCPHDEMPHDVAKAIMDWM 192
BLAST of mRNA_Ecto-sp13_S_contig11733.1494.1 vs. uniprot
Match: A0A7S1XLU4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XLU4_9STRA) HSP 1 Score: 63.2 bits (152), Expect = 3.070e-10 Identity = 33/63 (52.38%), Postives = 41/63 (65.08%), Query Frame = 1
Query: 1 QGPVLVTQGVKDPLNDADGRATLF---EALGPQVSVVRLD-GGHCPHHEVAADVCAALSSFVQ 177
+GPV++ QG+ DPLNDA RA F EA QV + L+ GGHCPHHEV V AAL F++
Sbjct: 147 KGPVVIVQGMSDPLNDARSRAKAFVNAEAYQNQVRLAALEKGGHCPHHEVPEKVNAALLDFLE 209 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11733.1494.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig11733.1494.1 >prot_Ecto-sp13_S_contig11733.1494.1 ID=prot_Ecto-sp13_S_contig11733.1494.1|Name=mRNA_Ecto-sp13_S_contig11733.1494.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=59bp QGPVLVTQGVKDPLNDADGRATLFEALGPQVSVVRLDGGHCPHHEVAADVback to top mRNA from alignment at Ecto-sp13_S_contig11733:608..1159+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig11733.1494.1 ID=mRNA_Ecto-sp13_S_contig11733.1494.1|Name=mRNA_Ecto-sp13_S_contig11733.1494.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=552bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11733:608..1159+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11733:608..1159+ >mRNA_Ecto-sp13_S_contig11733.1494.1 ID=mRNA_Ecto-sp13_S_contig11733.1494.1|Name=mRNA_Ecto-sp13_S_contig11733.1494.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=177bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11733:608..1159+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |