mRNA_Ecto-sp13_S_contig11695.1470.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11695.1470.1
Unique NamemRNA_Ecto-sp13_S_contig11695.1470.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11695.1470.1 vs. uniprot
Match: D8LKS5_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKS5_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 5.350e-16
Identity = 38/55 (69.09%), Postives = 46/55 (83.64%), Query Frame = 1 
Query:  172 MASTDRDLLLALFNATDGAFWKNKTSWGTDADLSQWHGVGINDQGRVGELTLSNN 336
            MA TDRD+L+AL+NATDG  WKNKT+W T+ADLS WHGV  +DQGRV +L+LS N
Sbjct:    1 MAPTDRDVLVALYNATDGPNWKNKTNWDTNADLSDWHGVKADDQGRVVKLSLSAN 55
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BLAST of mRNA_Ecto-sp13_S_contig11695.1470.1 vs. uniprot
Match: D7FJV1_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJV1_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 9.930e-16
Identity = 38/56 (67.86%), Postives = 46/56 (82.14%), Query Frame = 1 
Query:  172 MASTDRDLLLALFNATDGAFWKNKTSWGTDADLSQWHGVGINDQGRVGELTLSNND 339
            MASTDRD+L+AL+NAT+GA W+N  +WGTDADLSQW GV +N QGRV  L LS N+
Sbjct:    1 MASTDRDVLVALYNATEGANWQNSINWGTDADLSQWFGVTVNHQGRVVRLDLSFNN 56
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BLAST of mRNA_Ecto-sp13_S_contig11695.1470.1 vs. uniprot
Match: A0A6H5JX36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX36_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 1.320e-15
Identity = 34/56 (60.71%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:  172 MASTDRDLLLALFNATDGAFWKNKTSWGTDADLSQWHGVGINDQGRVGELTLSNND 339
            MASTDRD L+AL+NAT+G  W    +W T A LSQWHGV +NDQGRV  L L+ N+
Sbjct:    1 MASTDRDALVALYNATEGGRWSTNRNWNTGAPLSQWHGVHVNDQGRVVALELAENN 56
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BLAST of mRNA_Ecto-sp13_S_contig11695.1470.1 vs. uniprot
Match: D8LL09_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL09_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 1.280e-13
Identity = 34/58 (58.62%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:  166 STMASTDRDLLLALFNATDGAFWKNKTSWGTDADLSQWHGVGINDQGRVGELTLSNND 339
            STM  TDRD L+AL++A  G  WKN  +W  DADLS+WHG+ INDQGRV E+ L+ N+
Sbjct:   49 STMPQTDRDALVALYDAAGGFNWKNNGNWNADADLSKWHGININDQGRVVEVHLAANN 106
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BLAST of mRNA_Ecto-sp13_S_contig11695.1470.1 vs. uniprot
Match: A0A6H5JK91_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK91_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 1.960e-13
Identity = 32/56 (57.14%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:  172 MASTDRDLLLALFNATDGAFWKNKTSWGTDADLSQWHGVGINDQGRVGELTLSNND 339
            MA TDRD L+AL+ AT G  W+   +W TDADL  WHGV +NDQGRV +L L +N+
Sbjct:    1 MAQTDRDALVALYRATGGENWRESQNWDTDADLKTWHGVDVNDQGRVVKLKLRDNN 56
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BLAST of mRNA_Ecto-sp13_S_contig11695.1470.1 vs. uniprot
Match: A0A6H5K3C2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3C2_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 5.530e-13
Identity = 30/56 (53.57%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:  172 MASTDRDLLLALFNATDGAFWKNKTSWGTDADLSQWHGVGINDQGRVGELTLSNND 339
            MA TDRD L+A++ AT G  W    +W TD+DL  WHGV +NDQGRV +L L  N+
Sbjct:    1 MAQTDRDALVAMYRATGGEKWSTSQNWDTDSDLKTWHGVNVNDQGRVVKLELGFNN 56
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BLAST of mRNA_Ecto-sp13_S_contig11695.1470.1 vs. uniprot
Match: D8LFK2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFK2_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 7.920e-13
Identity = 35/57 (61.40%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:  169 TMASTDRDLLLALFNATDGAFWKNKTSWGTDADLSQWHGVGINDQGRVGELTLSNND 339
            TMA TDR  L+AL+NAT GA WKN  +W T A LSQWHGV +N QGRV +L+L  N+
Sbjct:   70 TMAQTDRKALVALYNATGGAEWKNNQNWTTSAALSQWHGVEVNTQGRVVKLSLGWNN 126
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BLAST of mRNA_Ecto-sp13_S_contig11695.1470.1 vs. uniprot
Match: A0A6H5KMQ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ1_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 9.380e-13
Identity = 33/63 (52.38%), Postives = 43/63 (68.25%), Query Frame = 1 
Query:  151 RHCNPSTMASTDRDLLLALFNATDGAFWKNKTSWGTDADLSQWHGVGINDQGRVGELTLSNND 339
            R   P  M+S DR  L+ALF++TDGA WK K++W TDA L+ W GV +N  GRV  L+L NN+
Sbjct:   39 RRSRPEQMSSMDRAALIALFHSTDGANWKRKSNWNTDAGLASWEGVRLNHAGRVVGLSLPNNN 101
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BLAST of mRNA_Ecto-sp13_S_contig11695.1470.1 vs. uniprot
Match: A0A6H5K1I9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1I9_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 1.650e-12
Identity = 32/56 (57.14%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:  172 MASTDRDLLLALFNATDGAFWKNKTSWGTDADLSQWHGVGINDQGRVGELTLSNND 339
            M+S DR  L+ALF +TDGA WK K++W TDA L+ W GV +N  GRV EL+L NN+
Sbjct:   43 MSSIDRAALIALFRSTDGANWKWKSNWNTDAGLATWEGVSLNHAGRVVELSLPNNN 98
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BLAST of mRNA_Ecto-sp13_S_contig11695.1470.1 vs. uniprot
Match: A0A6H5K8T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8T5_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 2.220e-12
Identity = 33/57 (57.89%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:  166 STMASTDRDLLLALFNATDGAFWKNKTSWGTDADLSQWHGVGINDQGRVGELTLSNN 336
            S + STDRD L+AL++ATDGA WK+K +W TD  L +W GV  NDQGRV  L L +N
Sbjct:  106 SAIMSTDRDALVALYDATDGANWKSKQNWNTDLPLGRWRGVEANDQGRVVGLDLPDN 162
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11695.1470.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKS5_ECTSI5.350e-1669.09LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
D7FJV1_ECTSI9.930e-1667.86LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5JX36_9PHAE1.320e-1560.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LL09_ECTSI1.280e-1358.62Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5JK91_9PHAE1.960e-1357.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3C2_9PHAE5.530e-1353.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFK2_ECTSI7.920e-1361.40Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5KMQ1_9PHAE9.380e-1352.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1I9_9PHAE1.650e-1257.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8T5_9PHAE2.220e-1257.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11695contigEcto-sp13_S_contig11695:1509..4176 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score81.6
Seed ortholog evalue2.5e-13
Seed eggNOG ortholog2880.D7FJV1
Model size341
KEGG rclassRC00049,RC00059,RC00171,RC00262,RC00397,RC00451,RC00714,RC00746,RC01248
KEGG koko:K01188
KEGG ReactionR00026,R02558,R02887,R02985,R03527,R04949,R04998,R10035,R10039,R10040
KEGG Pathwayko00460,ko00500,ko00940,ko01100,ko01110,map00460,map00500,map00940,map01100,map01110
Hectar predicted targeting categorymitochondrion
GOsGO:0000003,GO:0003002,GO:0003006,GO:0003674,GO:0004857,GO:0007275,GO:0007389,GO:0008150,GO:0009791,GO:0009908,GO:0022414,GO:0030234,GO:0032501,GO:0032502,GO:0043086,GO:0044092,GO:0048367,GO:0048608,GO:0048731,GO:0048832,GO:0048833,GO:0048856,GO:0050789,GO:0050790,GO:0050793,GO:0061458,GO:0065007,GO:0065009,GO:0090567,GO:0098772
Exons2
EggNOG OGs2CYK8@1,2S4YE@2759
EC3.2.1.21
Cds size339
CAZyGH1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462616.1941376-CDS-Ecto-sp13_S_contig11695:1509..16891681462616.1941376-CDS-Ecto-sp13_S_contig11695:1509..1689Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11695 1510..1689 -
1681462616.203999-CDS-Ecto-sp13_S_contig11695:4017..41761681462616.203999-CDS-Ecto-sp13_S_contig11695:4017..4176Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11695 4018..4176 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11695.1470.1prot_Ecto-sp13_S_contig11695.1470.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11695 1510..4176 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11695.1470.1

>prot_Ecto-sp13_S_contig11695.1470.1 ID=prot_Ecto-sp13_S_contig11695.1470.1|Name=mRNA_Ecto-sp13_S_contig11695.1470.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=113bp
LHHTLQADPRRWIWTGTRGRSYRSVVFNVLAWWRARRVDTTVETRAYLFL
RHCNPSTMASTDRDLLLALFNATDGAFWKNKTSWGTDADLSQWHGVGIND
QGRVGELTLSNND
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mRNA from alignment at Ecto-sp13_S_contig11695:1509..4176-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11695.1470.1 ID=mRNA_Ecto-sp13_S_contig11695.1470.1|Name=mRNA_Ecto-sp13_S_contig11695.1470.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2668bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11695:1509..4176- (Ectocarpus species13 EcNAP12_S_4_19m)
TTGCACCACACCCTGCAAGCTGATCCGAGGAGGTGGATTTGGACGGGAAC
AAGGGGGAGGAGTTACCGGAGCGTTGTGTTCAACGTCTTGGCGTGGTGGC
GGGCGAGAAGAGTGGATACTACTGTCGAGACCCGGGCTTATTTGTTCCTT
CGCCATTGCGTGAGTTCGTACAGGTGGTCGTTGCGTGAGTTTGTACAGGT
GGGTTCCAGATTTTCGCAATAAAAACAAGAGTGCATGCTGCAATCCTTTG
CTCTCGTCGTGGTGTGTTGTGGATGTTGGTGCCTGGTTTCCACGCCATCT
CTGAAGAATACCACGGCCAGCTGCAGTGTTTGTTTTCCGATCCTATTCCA
TACAAATGCCCGATCGGCCGGCCACAAAGGTACAAGTCAGTGGCGTTCCT
GTATCTCGGGACCTGCCAAATTATTTCTTCCGCATCCCCAGTACGCAATC
GAATACGGAAGATCCCCGAGAGAGCATCTCCCGCTGTTTATCGAAACCCT
AGCAGCTTCGTCTGGCACTGCTGTGTACAGCTTTCAGAGTGCAACAGGAT
GCCATTATGTGCGACTATGGTTGGGTACACTGCTGTTGCTGATGGCGCTT
CTGCTAACTGCGGCGGTGAGAGCGTTTGTGTAGACCCTCAGCCAAAGTGG
GCGCCGAAGACACACCAGGGATTTCGAGCGTTCGCAAATCCTTGATGGGG
CACACAGTTCAACTCGAGCCTGCTAAGGGTCTTGTTCGCCCGTGTTCCGT
GCTTTGTATTTCCGTGCAATATGCCGTGATCCGTAAATGTGTCTTAATTA
TTACTGACCGCGCTACCCGGCTGAACGACGTCAGTCTCAGTGCGGTTGAA
AACACAAAACAGTTCAAAATGCCATGAAATGGGACCCCGTGAGGGGGTGG
CTAGGCTGTTCTCCGAAGTGTTGTACAGCAGCACCAGAAAAAAACTGCAC
GTGTCTACATTGCAGTCGAGTTCGTTTTGGAGTGATTTCACCACCATCTT
CCTTATTTTACCGCAGTTCTCACCGCCATCATGATCGTTGCGGGTGTTCT
TCTCCAGACTAGCCCTGCGTCGTTTGGTGTGAGGGAGGTAATCTGGCCCG
AAGCCCTTGCTTTGTTCCACTCCATGCTTTCCTGCTCCACTGCTGTTTTG
GTCGTTCCATTGTCGTTCCGTTCCCTTCCCTCCTCCTTCGTCGCTTCCAA
ATGAATTCCCCTGAGCCACCAATCGTCTTCGTCCGCCCTTACTGAAGTCC
CAACCGAAAAATATTCGACGCACCCATGGGGACACACATCAGCCAATGCA
CCCACACCTTTTTTACCGACGCAACCACCCAACTAGAGCGACCTAGGCCT
ACGCAACTTACAGTAGCACCCACCCACGTCAACACCAACCTAGCACCTAT
CAAAGCAACACCAACCTAGAGATATCTCATCAATGCACCCAGCGCCAACC
TAGCCCTAATGCCGGCACACCAACCTAGAACTGAGCCACCCAACGCTAAC
GTAGCCCCAATGCAGGCACACCAACCTAGAACTGAGCCACCCAGCGCCAA
CCTAGCACCTATTGGGTTGGTCTGGGGTTAGGGTTAGCGATAGCGTTAGG
GATTTTAGCGGGTGTTATGAATTTTGATGGTTGGAGGGACAGAACACTGC
GCCTGCCTTAGTAGAGCGATAGGTGGAAGAAACGCAAATATGTTCGTGAC
GCTCGTTCTTCACACAGGATTTCCGTCGGTAAGAAAGCTGTGGGTGCATG
GCTTACATGCGTCCCTGCGGGTGCACAAATTTGATTTCGGTGGAATTTGG
TCCATCAATAACCCATGGCGTTTGGAGTACGTCGCTCGCACTGACAGAAA
GCGGCCAGCTCGAAGGTGAACTGTCTCCGAATCCAATGTGTTTGAGAATC
CTTCAGGCGAAGAAAGGCAGACTCGTTGTCGAATCTTCAAAATTTCCCGT
GAGGAATTCTTCGTGTGCCAAATGGTTTGCGGTGAAGTGTTGGCCGGTGT
GTGTGTATCTTACTTATTAGCATCGCGCTGACCGACTGACCAACGAAAAG
ACATCAGTCTCAGTGTGATGGAAAACACAAAATGCTTCTATTAGCCACCA
TCGGGGACCATGTGGCTGAGTCTACGCTACGTATGCATGCTCTCCGAATT
TATGACAAATGCCGCAGCAGTAACTGAAGAAAACTGCGCGTGTTTGCTAT
GGCTGCTATTTTGGATGCGCATGCGTTTGTGTGTTGATGGCCTCTTTCGG
GTAAGGGCGGTGACCACGCCGCGGAGGATATTGGCGTCCTTCCTCCCACG
TCATGACTGTTCGTGGCGTATTATTTGATGACTCCTTGAAGCGACCATGC
CATTGTACAGGTCGTGTGACACACCACGCAAGCGCGAAAAGATGACAGAA
AACAGCGCGTATTTTTTGTTTTTGCATGTGGCTTGTTTTACGCTTTTTTA
CCTTAAACTTCCTTCTCTCTCCCTGAATATCCCGCAGAACCCCTCCACCA
TGGCCTCGACCGATCGCGACTTGCTGCTTGCCCTATTTAACGCGACCGAC
GGAGCTTTTTGGAAGAACAAGACCAGCTGGGGCACGGATGCCGATCTCTC
GCAATGGCATGGTGTCGGAATTAATGACCAGGGCCGCGTGGGGGAGCTAA
CTCTGTCAAACAACGACC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11695:1509..4176-

>mRNA_Ecto-sp13_S_contig11695.1470.1 ID=mRNA_Ecto-sp13_S_contig11695.1470.1|Name=mRNA_Ecto-sp13_S_contig11695.1470.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=339bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11695:1509..4176- (Ectocarpus species13 EcNAP12_S_4_19m)
TTGCACCACACCCTGCAAGCTGATCCGAGGAGGTGGATTTGGACGGGAAC
AAGGGGGAGGAGTTACCGGAGCGTTGTGTTCAACGTCTTGGCGTGGTGGC
GGGCGAGAAGAGTGGATACTACTGTCGAGACCCGGGCTTATTTGTTCCTT
CGCCATTGCAACCCCTCCACCATGGCCTCGACCGATCGCGACTTGCTGCT
TGCCCTATTTAACGCGACCGACGGAGCTTTTTGGAAGAACAAGACCAGCT
GGGGCACGGATGCCGATCTCTCGCAATGGCATGGTGTCGGAATTAATGAC
CAGGGCCGCGTGGGGGAGCTAACTCTGTCAAACAACGAC
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