mRNA_Ecto-sp13_S_contig1164.1421.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1164.1421.1
Unique NamemRNA_Ecto-sp13_S_contig1164.1421.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1164.1421.1 vs. uniprot
Match: D8LKQ5_ECTSI (Eukaryotic initiation factor 4G n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKQ5_ECTSI)

HSP 1 Score: 655 bits (1690), Expect = 5.950e-224
Identity = 369/388 (95.10%), Postives = 375/388 (96.65%), Query Frame = 2 
Query:  575 TPEPLDEQPASSPCEGGDSSKATPALSPSTWKPNAAAAEWTPSFGAPAAPAAKTAEEEGVEQGTAEEDEVPTGEKDVGDTPESKATPSKDSAAVTGDNVAGKSDGATGAEATIRYDIAFLVSLRPKPEGTPRPEGLNPPDRVDILWDGKEPTPMKAGSMRGGGVRPLPPLGGRMGSSSRGLGEARGAPPPLRGAQRDMGRDRDNRMDQRGGRDXXXXXXXXXXXXXXXXXXXXXXPPVDTAPALEDCKPIEINEATRWKPKSLGAKDKAEDKLPTEEVLMKANAILNKMTLEKFDKLSVTFMDVGLRDPEVVSGVIDIIVEKAQMEPHFSSMYADLCARIARTPIAGLGEDATGKDASKGSKKFRKMLLVKVQQEFEKDWQGLFAAVQ 1738
            TPEPLDEQPA S CEGGDSSKATPALSPSTWKPNAAAAEWTPSFGAPAAPAAK+  EEG EQGTAEE EVP GEKDVGDTPESKATPSKDSAA+TGD+VAGKSD ATG EATIRYDIAFLVSLRPKPEGTPRPEGLNPPDRVDILWDGKEPTPMKAGSMRGGG+RPLPPLGGRMGSSSRGLGEARGAPPPLRGAQRDMGRDRDNRMDQRGGRDXXXXXXXXXXXXXXXXXXXXXXPPVDTAPALEDCKPIEINEATRWKPKSL    KAEDKLPTE+VLMKANAILNKMTLEKFDKLSVTFMDVGLRDP+VVSGVIDIIVEKAQMEPHFSSMYADLCARIARTPIAGLGEDATGKDASKGSKKFRKMLLVKVQQEFEKDWQGLFAAVQ
Sbjct:   28 TPEPLDEQPAPSQCEGGDSSKATPALSPSTWKPNAAAAEWTPSFGAPAAPAAKSVGEEGDEQGTAEEGEVPAGEKDVGDTPESKATPSKDSAAITGDDVAGKSDAATGVEATIRYDIAFLVSLRPKPEGTPRPEGLNPPDRVDILWDGKEPTPMKAGSMRGGGIRPLPPLGGRMGSSSRGLGEARGAPPPLRGAQRDMGRDRDNRMDQRGGRDXXXXXXXXXXXXXXXXXXXXXXPPVDTAPALEDCKPIEINEATRWKPKSLETTGKAEDKLPTEKVLMKANAILNKMTLEKFDKLSVTFMDVGLRDPKVVSGVIDIIVEKAQMEPHFSSMYADLCARIARTPIAGLGEDATGKDASKGSKKFRKMLLVKVQQEFEKDWQGLFAAVQ 415
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1164.1421.1 vs. uniprot
Match: A0A6H5L9P4_9PHAE (MI domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9P4_9PHAE)

HSP 1 Score: 496 bits (1278), Expect = 1.290e-162
Identity = 283/295 (95.93%), Postives = 286/295 (96.95%), Query Frame = 2 
Query:  863 DNVAGKSDGATGAEATIRYDIAFLVSLRPKPEGTPRPEGLNPPDRVDILWDGKEPTPMKAGSMRGGGVRPLPPLGGRMGSSSRGLGEARGAPPPLRGAQRDMGRDRDNRMDQRGGRDXXXXXXXXXXXXXXXXXXXXXXPPVDTAPALEDCKPIEINEATRWKPKSLGAKDKAEDKLPTEEVLMKANAILNK---MTLEKFDKLSVTFMDVGLRDPEVVSGVIDIIVEKAQMEPHFSSMYADLCARIARTPIAGLGEDATGKDASKGSKKFRKMLLVKVQQEFEKDWQGLFAAVQ 1738
            DN AGKSD  TG EATIRYDIAFLVSLRPKPE TPRPEGLNPPDRVDILWDGKEPTP+KAGSMRGGG+RPLPPLGGRMGSSSRGLGEARGAPPPLRGAQRDMGRDRDNRMDQRGGRDXXXXXXXXXXXXXXXXXXXXXXPPVDTAPALEDCKPIEINEATRWKPKSL AKDKAED+LPTEEVLMKANAILNK   MTLEKFDKLSVTFMDVGLRDPEVVSGVIDIIVEKAQMEPHFSSMYADLCARIARTPIAGLGEDATGKDASKGSKKFRKMLLVKVQQEFEKDWQGLFAAVQ
Sbjct:   91 DNAAGKSDEETGVEATIRYDIAFLVSLRPKPEATPRPEGLNPPDRVDILWDGKEPTPIKAGSMRGGGIRPLPPLGGRMGSSSRGLGEARGAPPPLRGAQRDMGRDRDNRMDQRGGRDXXXXXXXXXXXXXXXXXXXXXXPPVDTAPALEDCKPIEINEATRWKPKSLKAKDKAEDELPTEEVLMKANAILNKARMMTLEKFDKLSVTFMDVGLRDPEVVSGVIDIIVEKAQMEPHFSSMYADLCARIARTPIAGLGEDATGKDASKGSKKFRKMLLVKVQQEFEKDWQGLFAAVQ 385
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1164.1421.1 vs. uniprot
Match: A0A7S4VDN4_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VDN4_9STRA)

HSP 1 Score: 133 bits (334), Expect = 2.630e-29
Identity = 74/144 (51.39%), Postives = 101/144 (70.14%), Query Frame = 2 
Query: 1286 VDTAPALEDCKPIEINEATRWKPKSLGAKDKAEDKLPTEE-VLMKANAILNKMTLEKFDKLSVTFMDVGL-RDPEVVSGVIDIIVEKAQMEPHFSSMYADLCARIARTPIAGLGEDATGKDASKGSKKFRKMLLVKVQQEFEKD 1711
            V+TAP LE+CKP+E+N+ TRWK      + K E+   ++  VL KA  ILNK++L KFDKLS  F++ G+ R+ E + G I +IV KAQ EPHFS+MYA LC ++ARTP  G+ E +  K +SK  KKF+KMLL + Q+EFE+D
Sbjct:  267 VETAPPLEECKPLEVNDDTRWKANVFDKEKKTEEDEQSDALVLKKAFVILNKLSLTKFDKLSDDFINTGIGRNEECLQGAISLIVGKAQDEPHFSAMYAALCLKLARTPFDGIEEPS--KSSSKKGKKFKKMLLSRCQEEFEQD 408
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1164.1421.1 vs. uniprot
Match: B8BXR3_THAPS (Eukaryotic translation initiation factor eIF4G (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BXR3_THAPS)

HSP 1 Score: 127 bits (319), Expect = 4.220e-29
Identity = 74/147 (50.34%), Postives = 95/147 (64.63%), Query Frame = 2 
Query: 1283 PVDTAPALEDCKPIEINEATRWKPKSLGAKDK-----AEDKLPTEEVLMKANAILNKMTLEKFDKLSVTFMDVGL-RDPEVVSGVIDIIVEKAQMEPHFSSMYADLCARIARTPIAGLGEDATGKDASKGSKKFRKMLLVKVQQEFE 1705
            P DTAP LEDCKPIE+NE TRWK K    K+       E +   EEV+ KA  ILNK++L KFDKLS  F++ G+ RD E ++  + +IV KAQ E HFSSMYA LC ++A TP  G+ +D+      K  KKF+K+LL + Q EFE
Sbjct:   12 PNDTAPLLEDCKPIEVNEETRWKAKVFEGKEGEAAAVTEGEDSKEEVIRKALLILNKLSLTKFDKLSDEFINCGIGRDVECLTEAVSLIVNKAQEEQHFSSMYAGLCLKLAGTPFEGIDDDS-----GKKGKKFKKILLQRCQDEFE 153
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1164.1421.1 vs. uniprot
Match: K0RPP6_THAOC (MI domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RPP6_THAOC)

HSP 1 Score: 133 bits (335), Expect = 5.110e-29
Identity = 74/145 (51.03%), Postives = 98/145 (67.59%), Query Frame = 2 
Query: 1289 DTAPALEDCKPIEINEATRWKPKSL---GAKDKAEDKLPTEEVLMKANAILNKMTLEKFDKLSVTFMDVGL-RDPEVVSGVIDIIVEKAQMEPHFSSMYADLCARIARTPIAGLGEDATGKDASKGSKKFRKMLLVKVQQEFEKD 1711
            DTAPALEDCKP+E+N+ TRWK K     G  +  E     +E+L KA  ILNK++L KFDKLS  F+D G+ RD + ++G +++IV KAQ E HF+SMYA LC ++A TP+ G+ E       SK  KKF+K+LL + Q EFEKD
Sbjct:  278 DTAPALEDCKPLEVNDDTRWKAKVFKGEGGAESGEGDDGKDEILRKAMLILNKLSLTKFDKLSNAFIDCGIGRDIDCLTGAVEMIVTKAQEEQHFASMYASLCLKLASTPMEGMDE------GSKKGKKFKKILLERCQTEFEKD 416
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1164.1421.1 vs. uniprot
Match: A0A7S4S9Z9_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4S9Z9_9STRA)

HSP 1 Score: 133 bits (334), Expect = 6.970e-29
Identity = 74/144 (51.39%), Postives = 101/144 (70.14%), Query Frame = 2 
Query: 1286 VDTAPALEDCKPIEINEATRWKPKSLGAKDKAEDKLPTEE-VLMKANAILNKMTLEKFDKLSVTFMDVGL-RDPEVVSGVIDIIVEKAQMEPHFSSMYADLCARIARTPIAGLGEDATGKDASKGSKKFRKMLLVKVQQEFEKD 1711
            V+TAP LE+CKP+E+N+ TRWK      + K E+   ++  VL KA  ILNK++L KFDKLS  F++ G+ R+ E + G I +IV KAQ EPHFS+MYA LC ++ARTP  G+ E +  K +SK  KKF+KMLL + Q+EFE+D
Sbjct:  267 VETAPPLEECKPLEVNDDTRWKANVFDKEKKTEEDEQSDALVLKKAFVILNKLSLTKFDKLSDDFINTGIGRNEECLQGAISLIVGKAQDEPHFSAMYAALCLKLARTPFDGIEEPS--KSSSKKGKKFKKMLLSRCQEEFEQD 408
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1164.1421.1 vs. uniprot
Match: A0A7S2KXG3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KXG3_9STRA)

HSP 1 Score: 128 bits (322), Expect = 5.320e-28
Identity = 72/148 (48.65%), Postives = 99/148 (66.89%), Query Frame = 2 
Query: 1283 PVDTAPALEDCKPIEINEATRWKPKSL----GAKDKAEDKLPTEEVLMKANAILNKMTLEKFDKLSVTFMDVGL-RDPEVVSGVIDIIVEKAQMEPHFSSMYADLCARIARTPIAGLGEDATGKDASKGSKKFRKMLLVKVQQEFEKD 1711
            P DTAPALEDCKP+++NE TRWK K      G  D+ E     EE+L +A  ILNK++L KFDKLS  F++ G+ RD + ++G + +IV KAQ E HF+SMYA LC ++++TP+ G+ E       +K  KKF+K+LL + Q EFE D
Sbjct:  283 PNDTAPALEDCKPLQVNEETRWKAKVFVGKEGEADEDEAVESKEEILRRALLILNKLSLTKFDKLSDAFINCGIGRDIDCLTGAVGMIVNKAQEEQHFASMYAGLCLKMSKTPMEGIDE------GTKKGKKFKKILLERCQSEFETD 424
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1164.1421.1 vs. uniprot
Match: A0A3R7G0R1_9STRA (MI domain-containing protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7G0R1_9STRA)

HSP 1 Score: 130 bits (326), Expect = 7.340e-28
Identity = 71/140 (50.71%), Postives = 100/140 (71.43%), Query Frame = 2 
Query: 1289 DTAPALEDCKPIEINEATRWKPKSLGAKDKAEDKLPTEEVLMK-ANAILNKMTLEKFDKLSVTFMDVGLRDPEVVSGVIDIIVEKAQMEPHFSSMYADLCARIARTPIAGLGEDATGKDASKGSKKFRKMLLVKVQQEFE 1705
            DTAPALEDC P++INE TRWKP    +K + +D + T E  +K A AILNK+++EKFDKLS   ++V +R  EV+ GVI++++ KAQME HFS+MYA+LCA+IA+T +  + +D   +      K FRK+LL + Q+EFE
Sbjct:  328 DTAPALEDCAPLDINEETRWKPSH--SKSRLDDPVETTEASLKEAKAILNKLSIEKFDKLSDQLIEVAVRGLEVLKGVIEMVIAKAQMEWHFSTMYAELCAKIAQTDMPAITQD-DNEVTQDTHKLFRKLLLQRCQKEFE 464
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1164.1421.1 vs. uniprot
Match: A0A225X0V3_9STRA (Eukaryotic translation initiation factor n=3 Tax=Phytophthora TaxID=4783 RepID=A0A225X0V3_9STRA)

HSP 1 Score: 128 bits (322), Expect = 2.230e-27
Identity = 70/140 (50.00%), Postives = 101/140 (72.14%), Query Frame = 2 
Query: 1289 DTAPALEDCKPIEINEATRWKPKSLGAKDKAEDKLPTEEVLMK-ANAILNKMTLEKFDKLSVTFMDVGLRDPEVVSGVIDIIVEKAQMEPHFSSMYADLCARIARTPIAGLGEDATGKDASKGSKKFRKMLLVKVQQEFE 1705
            DTAPALEDC P+EINE TRWKP    +K + ++ + T E  +K A +ILNK+++EKFDKLS   +DV +R  EV+ GVI++++ KAQME HFS+MYA+LC++IA+T +  +  +  G+  +   K FRK+LL + Q+EFE
Sbjct:  286 DTAPALEDCAPLEINEETRWKPSH--SKSRLDEPVETSEASLKEAKSILNKLSIEKFDKLSDQLIDVAVRGLEVLKGVIEMVIAKAQMEWHFSTMYAELCSKIAQTAMPAITLEE-GEVVTDTHKLFRKLLLQRCQKEFE 422
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1164.1421.1 vs. uniprot
Match: W2Q3D8_PHYPN (MI domain-containing protein n=14 Tax=Phytophthora TaxID=4783 RepID=W2Q3D8_PHYPN)

HSP 1 Score: 127 bits (320), Expect = 3.970e-27
Identity = 70/140 (50.00%), Postives = 100/140 (71.43%), Query Frame = 2 
Query: 1289 DTAPALEDCKPIEINEATRWKPKSLGAKDKAEDKLPTEEVLMK-ANAILNKMTLEKFDKLSVTFMDVGLRDPEVVSGVIDIIVEKAQMEPHFSSMYADLCARIARTPIAGLGEDATGKDASKGSKKFRKMLLVKVQQEFE 1705
            DTAPALEDC P++INE TRWKP    AK + +D +   E  +K A +ILNK+++EKFDKLS   ++V +R  EV+ GVI++++ KAQME HFS+MYA+LCA+IA+T +  +  +  G+  +   K FRK+LL + Q+EFE
Sbjct:  286 DTAPALEDCAPLDINEETRWKPSH--AKSRLDDPVENSEASLKEAKSILNKLSIEKFDKLSDQLIEVAVRGLEVLKGVIEMVIAKAQMEWHFSTMYAELCAKIAQTAMPAITLEE-GEVVTDTHKLFRKLLLQRCQKEFE 422
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1164.1421.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKQ5_ECTSI5.950e-22495.10Eukaryotic initiation factor 4G n=1 Tax=Ectocarpus... [more]
A0A6H5L9P4_9PHAE1.290e-16295.93MI domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A7S4VDN4_9STRA2.630e-2951.39Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
B8BXR3_THAPS4.220e-2950.34Eukaryotic translation initiation factor eIF4G (Fr... [more]
K0RPP6_THAOC5.110e-2951.03MI domain-containing protein n=1 Tax=Thalassiosira... [more]
A0A7S4S9Z9_9STRA6.970e-2951.39Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2KXG3_9STRA5.320e-2848.65Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A3R7G0R1_9STRA7.340e-2850.71MI domain-containing protein n=4 Tax=Phytophthora ... [more]
A0A225X0V3_9STRA2.230e-2750.00Eukaryotic translation initiation factor n=3 Tax=P... [more]
W2Q3D8_PHYPN3.970e-2750.00MI domain-containing protein n=14 Tax=Phytophthora... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1164contigEcto-sp13_S_contig1164:10909..18457 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score663.7
Seed ortholog evalue5.8e-188
Seed eggNOG ortholog2880.D8LKQ5
Model size1744
KEGG koko:K03260
KEGG Pathwayko03013,ko05416,map03013,map05416
KEGG ModuleM00428
Hectar predicted targeting categoryother localisation
GOsGO:0000932,GO:0002181,GO:0002183,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003743,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0006996,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010494,GO:0016043,GO:0016281,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0031369,GO:0032991,GO:0034063,GO:0034622,GO:0034641,GO:0034645,GO:0035770,GO:0036464,GO:0042254,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons10
EggNOG free text desc.translation initiation factor activity
EggNOG OGsKOG0401@1,KOG0401@2759
Ec32 ortholog descriptioneukaryotic initiation factor 4G
Ec32 orthologEc-07_004420.1
Cds size1275
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03012,ko03019
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1164.1421.1prot_Ecto-sp13_S_contig1164.1421.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1164 12699..18457 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462612.4793496-UTR-Ecto-sp13_S_contig1164:10908..113601681462612.4793496-UTR-Ecto-sp13_S_contig1164:10908..11360Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1164 10909..11360 +
1681462612.4912684-UTR-Ecto-sp13_S_contig1164:12681..126981681462612.4912684-UTR-Ecto-sp13_S_contig1164:12681..12698Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1164 12682..12698 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462612.5040274-CDS-Ecto-sp13_S_contig1164:12698..130281681462612.5040274-CDS-Ecto-sp13_S_contig1164:12698..13028Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1164 12699..13028 +
1681462612.5194225-CDS-Ecto-sp13_S_contig1164:13474..135331681462612.5194225-CDS-Ecto-sp13_S_contig1164:13474..13533Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1164 13475..13533 +
1681462612.528287-CDS-Ecto-sp13_S_contig1164:14287..143331681462612.528287-CDS-Ecto-sp13_S_contig1164:14287..14333Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1164 14288..14333 +
1681462612.541127-CDS-Ecto-sp13_S_contig1164:14671..147881681462612.541127-CDS-Ecto-sp13_S_contig1164:14671..14788Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1164 14672..14788 +
1681462612.553691-CDS-Ecto-sp13_S_contig1164:15484..156421681462612.553691-CDS-Ecto-sp13_S_contig1164:15484..15642Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1164 15485..15642 +
1681462612.5620189-CDS-Ecto-sp13_S_contig1164:15901..160291681462612.5620189-CDS-Ecto-sp13_S_contig1164:15901..16029Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1164 15902..16029 +
1681462612.5708003-CDS-Ecto-sp13_S_contig1164:16578..167091681462612.5708003-CDS-Ecto-sp13_S_contig1164:16578..16709Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1164 16579..16709 +
1681462612.580728-CDS-Ecto-sp13_S_contig1164:17633..177611681462612.580728-CDS-Ecto-sp13_S_contig1164:17633..17761Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1164 17634..17761 +
1681462612.5932524-CDS-Ecto-sp13_S_contig1164:18279..184571681462612.5932524-CDS-Ecto-sp13_S_contig1164:18279..18457Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1164 18280..18457 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1164.1421.1

>prot_Ecto-sp13_S_contig1164.1421.1 ID=prot_Ecto-sp13_S_contig1164.1421.1|Name=mRNA_Ecto-sp13_S_contig1164.1421.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=425bp
MTETASSTTAKPTEAPAAAVAAVAAAGAAAAAASTTPEPLDEQPASSPCE
GGDSSKATPALSPSTWKPNAAAAEWTPSFGAPAAPAAKTAEEEGVEQGTA
EEDEVPTGEKDVGDTPESKATPSKDSAAVTGDNVAGKSDGATGAEATIRY
DIAFLVSLRPKPEGTPRPEGLNPPDRVDILWDGKEPTPMKAGSMRGGGVR
PLPPLGGRMGSSSRGLGEARGAPPPLRGAQRDMGRDRDNRMDQRGGRDDR
RSGGGGGGGGRDNRGGGGRRPPVDTAPALEDCKPIEINEATRWKPKSLGA
KDKAEDKLPTEEVLMKANAILNKMTLEKFDKLSVTFMDVGLRDPEVVSGV
IDIIVEKAQMEPHFSSMYADLCARIARTPIAGLGEDATGKDASKGSKKFR
KMLLVKVQQEFEKDWQGLFAAVQV*
back to top

mRNA from alignment at Ecto-sp13_S_contig1164:10909..18457+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1164.1421.1 ID=mRNA_Ecto-sp13_S_contig1164.1421.1|Name=mRNA_Ecto-sp13_S_contig1164.1421.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=7549bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1164:10909..18457+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGTGGTTGATCGACTCTGCGCAGCAGGAAGGTGTACTCGGAGACACGATT
GAGTCACGAGTCGGACAGCACGCTGGACAGGAAAAAAGCGGAGGAGTGTT
CGGAACCTTTGCTGCATTTTCTCCCGAATGAGGAGATAGTCATCTTCGAG
AGACGCAACAAAAACATCTCTCTGTAGCCGTGTGTGTGGAAGAGAGTTAC
CAACGCCTCGTGAGCGTGCTGTGTGTGAGAGCGGCTCCACGCGCGCGACA
GCACCACCAGTGTTGCCCCTTGTTGAAGGTCTTCAAAAAGCAACTGGTGT
GGAAAAGAAGCCGGGGTGGAGGGCGAGAGAGAGAACGCGACGGAGCGGCG
ACAACGTGCGTGAGACACCAGGAACCCAGCGCACACAGGGTTTAATCCCT
TTGAGATAAAGGAAAGAACGCTGCAGGAACCTCCAGTGGCAAGCAACAGC
AGGTGTGCGCCGCAAAGCCTCTAAGCTTCCCCCCCCCTGCTCTATGCTCC
CCTCATCCTTCTACTCAGGACGCGATAATCTTACTGCCGCTTCAGCTTTT
GTTTCTGTAAACGAAATTGCATGTATCGGGGGGCATTTTTTGAACAGGTT
GTTTTTGTGCGGTCGGTGTTGGTTGTTGCAGTCTCTCCCTCGATGGCTCT
TGTAAAGGCTTTCTGGAGAGGGGTCCCCACGTTTGACACTCGATGCGGCC
GCTTGATCTACATTAGAAAAAGAAAGACGACGGCGGTCTTGACCCCATTG
CACGTCTTCGACTCTCAAGCGTACGAAAGGACGTGCAATGCTGCTATCCA
TCGTTTTTGCTGGTGCAGATTATACACCCCGGGTGTGCGGCTCTATCGCG
GACCAAATTTTGTGTCCCCAGGCAGCAGGAACAAGAGATTACGTACAATG
AACCCGGGTTGATACGCATGTGCGCACGGCCGAGAGCACGCATGAACGCG
TACACGATCGCGTACACGATGCATGAAGAAAATCGGAACATATGTTATTG
GCAACCGGCGAGCAATGCGTGCCGACGGGGTTTGATTGCAACGCGTTCTG
TTCAACGGTACCCTTCGAAACCGATGATGTGGTGTGACATGTTACGGGAA
CGGGCTTGGAACGCGGCCGTGTGCCGAAGACTGACGGCGTGTTTGCGTGG
GAGGCAGGCGTCCGTTCTCATGTATAATAGACACGTTGTTGTAGTGCATG
GGACACCCTTCACGGTAGCACACACGAAGCCGGTGGCTCGGGTGCGCTGT
TTTGTCTCTCTGCCTGGTTTTCTTGCTCAGCCCATCAGCGCGGACCCAGC
AACGTCAGCTCATGTGTGTCCGTCCGTCCCATCTATCCCACCTCATTGAG
TGCTCCGGGTAACAACAGCAAATCTTACTCTTGCAAAACCAAGAAACCCC
CCGTCACCTCCACCCTCTCCTTCGTCGTGTGCTGCGGTTGCGTCAGGATA
TAACAACATCCGGACGCCCGTGTTGTGTCTCCGTGTTCCTACTTGGAGCA
CTTATCTGGTATCCTTTGCTGTATTGACGCAATTCCTGTCCACACAACCC
CCAGTACAAGCGGTTCCGGCACGTCCTCTGTCCCAACTATCGTGCACCCC
CCCTATTCCTCGGTCTGGCATTCTGCACGTGTAAAAAAAGACAGGAATAA
TCTGTGTGCCTGACGACGATGCCACCCCTGCTCTCGTCGTCGAGGTTCGC
GGTTCCTTCTGTTTGACTCTCGCGTCTCGGGCTTGGTTCCTGCTCTTTTT
CGCGATGCAATCTCTATACACAGACAGCAGTACCGGCAGCATGACCGAGA
CAGCATCGTCAACGACGGCCAAGCCCACAGAGGCCCCGGCCGCGGCGGTA
GCAGCAGTCGCAGCAGCAGGTGCAGCAGCAGCAGCAGCATCGACGACGCC
CGAGCCCTTGGACGAGCAGCCCGCATCTTCCCCGTGCGAGGGAGGGGACA
GCTCGAAGGCAACCCCGGCCCTGTCCCCTTCCACCTGGAAACCCAACGCG
GCCGCCGCCGAGTGGACGCCTAGCTTTGGAGCACCCGCAGCGCCAGCGGC
GAAGACTGCGGAGGAAGAAGGGGTTGAACAGGGGACTGCTGAAGAGGACG
AGGTGCCAACTGGGGAAAAGGTGCGGAGGCCGAAGGTCCCGGGGAGGGGG
CGGTGGTTCATGTACCTCCTGTTGCTGTTGTCTACATGCGTGATTTGGTT
ATCCGCCCGGTGCTTTTGCGTTCGCCCTTGTCTCGTTTTTTGTGGGTCCC
CTGTGTCAGTGCCATGTCTTGATCTTCATTTCGCTGTTTGTATCTATTTT
TTCGGCATCTCGTTGTTCATGGGACACATCTACCGGATCGATGCGATTTT
GTTGCTCGGTAAGAAGGCGTCGGTGGGCACCTCGGATGTAAGCATGCGAC
CAAACATGTCCCAAACGTGATAAACCTGCCTCGCCAACGGTCACAAGACC
GACCGGAGCCCCAAGCCGCAAAGAGGGCTCACACCCCGTACCCTAACTGC
CATCCCACACACGATCCCACTACCGTCGTTGACCCTCCCCCCCCCCGTCT
TGTTGTGCCGGCGTAGGATGTCGGCGACACGCCTGAGTCGAAGGCAACTC
CTTCCAAGGACTCTGCGGCCGTCACGTGAGACACCACACATCAGTCATAC
AAAAGTGCAGCTCATCGCACAACGTTTTCCTTGCTCTCGTTATTTCAATA
TTGTGGCAGATATTGTTGTGTGTGTTGTATGATATGTACCTCATGTACGT
GTTTATTTTGGGTAAGAGGGGGGCGGGCGGAGTCCAGTGAATAATGATGA
TTGCTTGCCTTCGCACAAATGGCACTGTTGACCGTGCGTTCCCTTCCGAA
ATGCCGAACCGTTCCTTTTCCTTGTAGACACTTACCATCAAGACTTGGGT
GCTCTCGACGTGGCTGCCGCACTTGGCGTACATAATAGCCTCGTGCCCGT
CATATGTGTCCGCCTACTCTACCCAAGGCCCGGCCGGGTAGCGTGCCCAG
GACACACATAACACACTCGTGGAAGGAACGATTGGCCATCGTTGGTCGGT
CTTGTGAAAAAATCTCCCTCCTCTCTGGAGGACGTGTGATAAAATGGTCG
AACAACTGAGGCATGCAAAACACGAGTACCCCTCCCCATGTATCTCTGTG
TGCGTGTGTGTGTTTTGTCACGAAGCAACGAAACTAATCTGTTGCGCATT
ATCCGTCTTTGCGAACAGGTTGAAGCCATGATAGATACGCACCGAGATTA
AACAATCCCACGAAGCCGTTCACAAGACAATCCCACGAAACCATCCCACC
AGAGTGTGCGTGAAGCTTGTCCTTTCCGTTGCCGTATCTCTGCGGCGAAC
GCCCTGTTCTTGTGTCTCGTTTATTCCAGAGGGGACAACGTGGCTGGGAA
ATCGGACGGGGCGACTGGTGCAGAGGTACGTGTAAAGGTCACCGAAAGTG
GTGGTGGTGGTGGGGCCGGAACCACGGAAGCAGGGGTAAGAGCACTGGGC
TATGTAGCGCTGTTTAGCTTCTCTGTGGAGCTTTGTGGTGAGGAAAGAGG
CTTACAGTTGTGGTCAGGAAGGAGAGGGACAAGTAGAGGAAAAGTGTGTT
TCCTCTTGTTAATCTTCTGAGGAAGGATGATAAAATTGCCAGAAAGAGAG
CAGAAGCAAGAGAACAGGGGAGATAGACAGAGACATGAGAGCCCATTCGG
TGAACCGCTGCTAATGCTGCTGCTGACCCTGGTGCCGCCGTTGTTTGTTG
CTTCTTCCGCCAGGCGACGATACGGTACGACATCGCGTTCCTTGTTAGCC
TCAGGCCGAAGCCGGAGGGCACACCTAGGCCCGAAGGCCTCAATCCTCCC
GATCGGGTTGACATACTGTGGGATGGAAAGGTACAACAGTAGTGGTAGAG
AGGCATGTCCGCCTGTCGTAATCTGTGAAAGTCAAAAGTTACCGTGTGTA
CTTACGGCGGTACTAGAGTAGTTGCCTCGCCCCGGACCGTTTCCAAGGTA
GAAGTGTGTAAATACCGATATGAAATCATAACATGGGTACCTGGAGAAAT
TGCACCAGAACGTCCCATCTATATTTGTCCATCGGAACGATATTTTATCG
TCCGGGGGCGGCCTGGCTCATTCCCATCCGCGTGGCACCCTTCCCGGGGC
AACGTCCACCCCGAGCGAACACCCCCACAGCCCAAGAGTTGTGGAGAAAT
GAATGAAATGAGAGCTTCCTTGGGAAGCCATATTATCGCAGGGGGGACCG
TGCTGCTGCTGCTGCTGCTGCCACTGCTGCTGCTACTGTATGCGTACTTT
CGTGGTTTTTTCGAACACCAAGTGTAATAACACGGCAGTGCGCGTGTCCC
TTGACGAACATGTTTTCTCAAGCACAGAGCACGGCAGTAATTTGCACCAA
CGCTGATACCGTGCAGAGCCAGTTGATGTGTGTATTGCACGTACTGCACG
CGTGTTATCCTCTTTGCCAGTGCTTCCAGTAGAAAATGCGAACCGTCGTT
TGGTGCCTACTCTGCTAAGTGTTGTTTCTCGTCTCTCTTGCTTTTTTGTA
ACATTTCTTAATGCGTTTCCGCGCAGGAGCCGACTCCCATGAAGGCGGGT
TCAATGAGGGGAGGGGGCGTCCGTCCCCTACCCCCCCTCGGGGGACGCAT
GGGTTCATCTTCGCGCGGGCTCGGAGAGGCTAGGGGGGCACCGCCTCCGT
TGCGGGGGGCACAGCGGGACATGGGCCGTGATAGGTACGGTGCGCGGCCT
TGACTGGATCGGCACACGGTTACAACACGCGTGTGACGATCAAATGTGAA
TGGCGGCGTCAGAGATGGGTTCTTCCTTTCTAGTGACTGCTGCTCGTGCT
TGTCCCTGGGACTGCTCCTCTCGTGTGATGAAGAAGCGCGCATTTTTTGT
GGGCGAGCGATCCACCAGTCCAACGAATGCAGACACATACATGTACACTT
ATTTGCACTACCCTTATAACCGCCATGGACGTACGTTTGCCAGGGATAAC
CGCATGGACCAGCGCGGTGGGCGAGACGACAGACGATCAGGTGGCGGGGG
GGGCGGCGGCGGTAGAGACAACAGAGGGGGCGGGGGCAGGAGACCCCCCG
TGGACACGGCGCCTGCCCTAGGTGAGGGAGAAAAGAGGGTGGGAGAATGA
TGCCACTTTGCCGTCACAGCAGCAGCAACGCCTTTGCTTGTTTGAGTTCC
TGGCGCGCGCGGGGCGTGGGGATGCTCTTTTTTGCGTCTGCTCTGTGGAA
CAAGTCTTAATGCGTAGTACCTCTCGTTGGCATGAGGTCAAGCGCTGGCT
ACCGGTGTGCGCCCGGCCGCCGCCTAGGATGTGAAAGAGGTCCGCCGTTT
GCTAATGTCACCAACGCCTGTCGCCGATTTGCTGTTTTTCCGAGAACGAG
CCCATTACCGGCCCTCTTCCTTTATTTTTGTTGTCTGGCTCTCTCCGTCC
GGCAATCAATTCTTGGCGGCAGTAGCAGTAGAGGCAGCGGGTCTCTTGCC
GCGCTTTCGTATCGTGGCGTCGTTGTGGATTCCGTTTGTCGAGACATGGC
GCACAGCAAGAATACCCATACCCAATCGTTTCCCGGGTTTTTCCCGCGGG
TTGGTGTAGTCCTCACCATCCCGTCCCGTCCCCGCCCTCTTTTGTTGTGC
GTCGTCCGCGCGTTTCGTAGAGGACTGCAAGCCCATCGAGATCAACGAGG
CCACCCGGTGGAAACCCAAGTCTCTGGGGGCGAAGGACAAGGCGGAGGAC
AAGCTGCCGACCGAGGAAGTGCTCATGAAGGCCAACGCCATCCTCAACAA
GGCGAGTGAGGACACAGCACGGGGGTTGCTGCTCTGCTGTCGGTTGTTTT
GGACCGACTTGACGCGATGAAATCAAGTTTGTGAGGAAGTAGAACAGTGA
GGGGGGGACGCAGACCGTAAGTCCTAGCCCAAATTTGTACGCTTTTTACT
GGTCGTCTCGTGCATCCAACGTATTTACTTGAATGAAAAGCCGTAGGAAT
GGTTGCTGGTCGTTTTTTGGCATGGCCTTCCTTCCCGGAGCAGACTGAAG
AAACAAACGCACAGGGCTGGCTTGACTGCCGCGTGAGGAGGCGCTACTAC
CGTACCCGCAGCTACTGTCCATCCAGCGCGGCTCCTCGACCGTGGGAAGA
AGTGCTCTTGTGATGCCTCGGAGCTTGGGTTCCGTCCGCCGTTTGGTTGT
TGCACGCCTCGCTTGCGATCTTCGTCGTCGTCGTTGTCACGTGTGCGTGT
TTGGAGAGAGAGAGACGGTCGGTGTTGTCCGTTGCCCGTCTCGGTGGTGG
CGTTCTGACGCCGGTAGCCCGGGGATGGGATGTCTGCCCCCCGGACGATG
TTGCTTGCTTGCATGCATGCGGTACATACAAGAGAGCAGTCAAAATGATT
TCTGATAAGTAATGCGTACTTCTTTTCTTCTTTTTCTGTCGGTTTTCTTC
TCCACGAGTTCAACACAAACATGCAAAACGATCCTTGAGAAGAAGTCGGC
GCATACCGAGACTACACCTGAGGTTTCGGCCGAACACCATTGTTTGCAGA
AACGATATCGTACGTTGAACCCCAGTAGACCTGTCCAGTGTGGTCTCTCT
TGCGCACAGCTGGAGGCTTCGAAAGCAAGTACTCCTTGTCAACTGTCTTC
CCCTCTGCATGTCTCATCTTGAGCATTTTTTGTTTTTCTTCTCATTTTTT
CGTTCTTGTTTCGCTTGTCTTGCAGATGACGCTGGAGAAGTTCGACAAGC
TGAGCGTGACGTTCATGGACGTGGGACTCCGCGACCCAGAGGTGGTGTCC
GGGGTGATCGATATCATCGTTGAAAAGGCGCAGATGGAGCCCCACTTCTC
AAGGTCCGCGGCTTGGCCTTGGCTCTCTCTCTTTGCTCTCTCTCTAGCTG
TCCCGGTAGTGTGTCTTCGCCCTTTGCGGTTGTTACTGTAGCATGGTGAC
GTGATCATGATTTGTTTTGTTTACGGTGTCGACGCTCGGATCGTTTTCGG
CTAGTCTTTACGACCCTGGTCGCTGCCAAAGCCAGCCCTACTGTGTACCT
GATCCTTCCCACACTGTCCTCTTCTCCACATGGGATCTCTTGTAGTTGTT
GTTGCGGTAAGTGTGCTCTTTACTGGAATCCAATTAGCACACACACAAAA
CCACTCACGCAGCTTTTTTACAATCGAAGCGTTGGCGTTTTTTAGCCTCG
CTTAGAATAGACGTATTTTTATTGGTCAGCCGGCTAGCGCTGTCGATGCT
AAGTATTACACCGCCAACTTTTCTTTGTGCCCCTCGTTAATTGATCACCC
TTTTGCCCCTCCCGCCGTCTGTGTTATTGCGTCTCTCCGACTGGATTTGC
TCCGCCCCGCTCGACATGCAGCATGTATGCGGACCTGTGCGCGCGAATCG
CCCGAACCCCAATCGCCGGCCTGGGCGAAGACGCCACGGGCAAGGACGCT
AGCAAGGGCAGCAAGAAGTTCCGCAAGATGCTGCTGGTGAAGGTCCAGCA
GGAGTTCGAGAAGGACTGGCAGGGATTGTTCGCCGCCGTGCAGGTGTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1164:10909..18457+

>mRNA_Ecto-sp13_S_contig1164.1421.1 ID=mRNA_Ecto-sp13_S_contig1164.1421.1|Name=mRNA_Ecto-sp13_S_contig1164.1421.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1275bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1164:10909..18457+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCGAGACAGCATCGTCAACGACGGCCAAGCCCACAGAGGCCCCGGC
CGCGGCGGTAGCAGCAGTCGCAGCAGCAGGTGCAGCAGCAGCAGCAGCAT
CGACGACGCCCGAGCCCTTGGACGAGCAGCCCGCATCTTCCCCGTGCGAG
GGAGGGGACAGCTCGAAGGCAACCCCGGCCCTGTCCCCTTCCACCTGGAA
ACCCAACGCGGCCGCCGCCGAGTGGACGCCTAGCTTTGGAGCACCCGCAG
CGCCAGCGGCGAAGACTGCGGAGGAAGAAGGGGTTGAACAGGGGACTGCT
GAAGAGGACGAGGTGCCAACTGGGGAAAAGGATGTCGGCGACACGCCTGA
GTCGAAGGCAACTCCTTCCAAGGACTCTGCGGCCGTCACAGGGGACAACG
TGGCTGGGAAATCGGACGGGGCGACTGGTGCAGAGGCGACGATACGGTAC
GACATCGCGTTCCTTGTTAGCCTCAGGCCGAAGCCGGAGGGCACACCTAG
GCCCGAAGGCCTCAATCCTCCCGATCGGGTTGACATACTGTGGGATGGAA
AGGAGCCGACTCCCATGAAGGCGGGTTCAATGAGGGGAGGGGGCGTCCGT
CCCCTACCCCCCCTCGGGGGACGCATGGGTTCATCTTCGCGCGGGCTCGG
AGAGGCTAGGGGGGCACCGCCTCCGTTGCGGGGGGCACAGCGGGACATGG
GCCGTGATAGGGATAACCGCATGGACCAGCGCGGTGGGCGAGACGACAGA
CGATCAGGTGGCGGGGGGGGCGGCGGCGGTAGAGACAACAGAGGGGGCGG
GGGCAGGAGACCCCCCGTGGACACGGCGCCTGCCCTAGAGGACTGCAAGC
CCATCGAGATCAACGAGGCCACCCGGTGGAAACCCAAGTCTCTGGGGGCG
AAGGACAAGGCGGAGGACAAGCTGCCGACCGAGGAAGTGCTCATGAAGGC
CAACGCCATCCTCAACAAGATGACGCTGGAGAAGTTCGACAAGCTGAGCG
TGACGTTCATGGACGTGGGACTCCGCGACCCAGAGGTGGTGTCCGGGGTG
ATCGATATCATCGTTGAAAAGGCGCAGATGGAGCCCCACTTCTCAAGCAT
GTATGCGGACCTGTGCGCGCGAATCGCCCGAACCCCAATCGCCGGCCTGG
GCGAAGACGCCACGGGCAAGGACGCTAGCAAGGGCAGCAAGAAGTTCCGC
AAGATGCTGCTGGTGAAGGTCCAGCAGGAGTTCGAGAAGGACTGGCAGGG
ATTGTTCGCCGCCGTGCAGGTGTGA
back to top