mRNA_Ecto-sp13_S_contig1164.1419.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1164.1419.1
Unique NamemRNA_Ecto-sp13_S_contig1164.1419.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1164.1419.1 vs. uniprot
Match: A0A6H5L8U0_9PHAE (KH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8U0_9PHAE)

HSP 1 Score: 525 bits (1351), Expect = 4.260e-176
Identity = 391/432 (90.51%), Postives = 396/432 (91.67%), Query Frame = 1 
Query:    1 MCGELLSRESSGGRVSGTSTPLLSSSVSVSRDSPRGSAGSVEDFGTPATIGAADMNGGGGMDRPLLTRGRSXXXXXXXXXXXXXXXXXXXXXXXXXXXAGALHRGGMLGNMSGNGTGNGGVSDDGELPSCLVGILDSFLGGGGKSYVSDGNGIRSGSG--GSVGNNNANEKSGNNNGAAPPLRSPSTITGIEMEVGRSAFARLGERGLDDIKDLSGAGISAPESPEGYGHLSDEAVAAMGAVYSSAARGNAPCDGVGLAAANXXXXXXXXXXXXXXXXXXXXXXXVGAGQHPRGKAAGFXXXXXXXXXXXXXXXXSSPFEGFGLKEGVRANTGGGATTTSGAIAAVTGGVSRLGLGTTKSGXXXXNG-VSPSLSSAVGQVSGGLAXXXXXXXXTAGPNSLKTVKITGTAEEVQLAEYLIRVRTTGGNMAAAS 1287
            MCGELLSRESSGGRVSGTSTPLLSSSVSVS+DSPRGSAGSVEDFGTPATIGAADMNGGGGMDR LLTRGR XXXXXXXXXXXXXXXXXXXXXXXXXXXAG LHRGGMLGNMSGN    GGVSDDGELPSCLVGILDSFLGGGGKSYVSDGNGIRSGSG  GSVGN+NANEK+GNNNGAAPPLRSPSTITGIEMEVGRSAFARLGERGLDDIKDLSGAGISAPESPEGY HLSDEA+AAMGAVYSSAARGNAPCDGVGLAA  XXXXXXXXXXXXXXXXXXXXXXX              XXXXXXXXXXXXXXXXSSPFEGFGLKEGVR N GGGA TT GAIAAVTGGVSRLGLGTT S XXXX   VSPSL+SAVGQVSGGL XXXXXXXXTAGPNSLKTVKITGTAEEVQLAEYLIRVRTTGGNMAAAS
Sbjct:  396 MCGELLSRESSGGRVSGTSTPLLSSSVSVSKDSPRGSAGSVEDFGTPATIGAADMNGGGGMDRQLLTRGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGVLHRGGMLGNMSGNXXXXGGVSDDGELPSCLVGILDSFLGGGGKSYVSDGNGIRSGSGNXGSVGNSNANEKNGNNNGAAPPLRSPSTITGIEMEVGRSAFARLGERGLDDIKDLSGAGISAPESPEGYCHLSDEALAAMGAVYSSAARGNAPCDGVGLAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSPFEGFGLKEGVRGNMGGGAATTPGAIAAVTGGVSRLGLGTTMSXXXXXXXXVSPSLASAVGQVSGGLXXXXXXXXXTAGPNSLKTVKITGTAEEVQLAEYLIRVRTTGGNMAAAS 827
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BLAST of mRNA_Ecto-sp13_S_contig1164.1419.1 vs. uniprot
Match: D8LKQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKQ3_ECTSI)

HSP 1 Score: 498 bits (1283), Expect = 1.420e-171
Identity = 378/429 (88.11%), Postives = 380/429 (88.58%), Query Frame = 1 
Query:    1 MCGELLSRESSGGRVSGTSTPLLSSSVSVSRDSPRGSAGSVEDFGTPATIGAADMNGGGGMDRPLLTRGRSXXXXXXXXXXXXXXXXXXXXXXXXXXXAGALHRGGMLGNMSGNGTGNGGVSDDGELPSCLVGILDSFLGGGGKSYVSDGNGIRSGSGGSVGNNNANEKSGNNNGAAPPLRSPSTITGIEMEVGRSAFARLGERGLDDIKDLSGAGISAPESPEGYGHLSDEAVAAMGAVYSSAARGNAPCDGVGLAAANXXXXXXXXXXXXXXXXXXXXXXXVGAGQHPRGKAAGFXXXXXXXXXXXXXXXXSSPFEGFGLKEGVRANTGGGATTTSGAIAAVTGGVSRLGLGTTKSGXXXXNGVSPSLSSAVGQVSGGLAXXXXXXXXTAGPNSLKTVKITGTAEEVQLAEYLIRVRTTGGNMAAAS 1287
            MCGELLSRESSGGR SGTSTPLLSSSVSVSRDSPRGSAGSVEDFG PATIGAADMNGGGGMDRPLLTRGRSXXXXXXXXXXXXXXXXXXXXXXXXXXXAGALHRGGMLGNMSGNGTGNGGVSDDGELPSCLVGILDSFLGGGGKSYVSDGN IRSGSGG                AAPPLRSPSTITGIEMEVGRSAFARLGERGLDDIKDLSGAGISAPESPEGY HLSDEA AAMGAVYSSAARGNAPCDGVGLAAANXXXXXXXXXXXXXXXXXXXXXXX              XXXXXXXXXXXXXXX SSPFEGF L+EGVR N   GA TT GAIAAVTGGVSRL L TT S XXXXNGVSPSL+SAVG VSGGLAXXXXXXXXTAGPNSLKTVKITGTAEEVQLAEYLIRV TTGGNMAAAS
Sbjct:    1 MCGELLSRESSGGRGSGTSTPLLSSSVSVSRDSPRGSAGSVEDFGAPATIGAADMNGGGGMDRPLLTRGRSXXXXXXXXXXXXXXXXXXXXXXXXXXXAGALHRGGMLGNMSGNGTGNGGVSDDGELPSCLVGILDSFLGGGGKSYVSDGNSIRSGSGGXXXXXXXXXXXXXXXXAAPPLRSPSTITGIEMEVGRSAFARLGERGLDDIKDLSGAGISAPESPEGYYHLSDEAAAAMGAVYSSAARGNAPCDGVGLAAANXXXXXXXXXXXXXXXXXXXXXXXXXX----------XXXXXXXXXXXXXXXXTSSPFEGFRLREGVRGNMSDGAATTPGAIAAVTGGVSRLVLDTTNSXXXXXNGVSPSLASAVGHVSGGLAXXXXXXXXTAGPNSLKTVKITGTAEEVQLAEYLIRVSTTGGNMAAAS 419
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1164.1419.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L8U0_9PHAE4.260e-17690.51KH domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D8LKQ3_ECTSI1.420e-17188.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1164contigEcto-sp13_S_contig1164:3058..5292 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1485
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_004400.1
Cds size1290
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462612.3658183-UTR-Ecto-sp13_S_contig1164:3057..32201681462612.3658183-UTR-Ecto-sp13_S_contig1164:3057..3220Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1164 3058..3220 -
1681462612.3826718-UTR-Ecto-sp13_S_contig1164:3970..40021681462612.3826718-UTR-Ecto-sp13_S_contig1164:3970..4002Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1164 3971..4002 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462612.392804-CDS-Ecto-sp13_S_contig1164:4002..52921681462612.392804-CDS-Ecto-sp13_S_contig1164:4002..5292Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1164 4003..5292 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1164.1419.1prot_Ecto-sp13_S_contig1164.1419.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1164 4003..5292 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1164.1419.1

>prot_Ecto-sp13_S_contig1164.1419.1 ID=prot_Ecto-sp13_S_contig1164.1419.1|Name=mRNA_Ecto-sp13_S_contig1164.1419.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=430bp
MCGELLSRESSGGRVSGTSTPLLSSSVSVSRDSPRGSAGSVEDFGTPATI
GAADMNGGGGMDRPLLTRGRSSSSSGIGGGGAAATVLDSGGGARSGGGAG
ALHRGGMLGNMSGNGTGNGGVSDDGELPSCLVGILDSFLGGGGKSYVSDG
NGIRSGSGGSVGNNNANEKSGNNNGAAPPLRSPSTITGIEMEVGRSAFAR
LGERGLDDIKDLSGAGISAPESPEGYGHLSDEAVAAMGAVYSSAARGNAP
CDGVGLAAANAAAAAAATAAAAAAAAAAASNKAVGAGQHPRGKAAGFGRG
GSMSSGSSSSASTSSPFEGFGLKEGVRANTGGGATTTSGAIAAVTGGVSR
LGLGTTKSGGGGGNGVSPSLSSAVGQVSGGLAAGGGGGGGTAGPNSLKTV
KITGTAEEVQLAEYLIRVRTTGGNMAAAS*
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mRNA from alignment at Ecto-sp13_S_contig1164:3058..5292-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1164.1419.1 ID=mRNA_Ecto-sp13_S_contig1164.1419.1|Name=mRNA_Ecto-sp13_S_contig1164.1419.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2235bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1164:3058..5292- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGCGGCGAGCTGCTGTCGCGCGAGAGCTCTGGTGGGCGCGTGAGCGG
CACCAGCACCCCGCTCCTGTCCTCGTCCGTGTCCGTGTCCAGGGACTCGC
CTCGCGGCAGCGCTGGATCCGTCGAGGACTTCGGCACCCCGGCTACAATC
GGCGCGGCCGACATGAACGGCGGCGGGGGCATGGACCGCCCGTTGCTCAC
CCGGGGGCGGTCTTCCTCGTCCTCGGGCATTGGGGGCGGCGGAGCGGCGG
CGACGGTGTTGGACTCCGGTGGCGGGGCGCGCAGCGGCGGCGGGGCCGGA
GCCCTGCACCGGGGCGGAATGCTCGGCAACATGAGCGGCAACGGTACTGG
CAACGGAGGCGTTTCCGACGACGGCGAGCTTCCCTCGTGCCTCGTGGGGA
TCCTAGACTCCTTCTTGGGAGGAGGAGGAAAATCGTACGTCTCCGACGGC
AACGGCATCCGCAGCGGCAGCGGCGGAAGCGTGGGCAACAACAACGCCAA
CGAAAAGAGCGGCAACAACAACGGCGCCGCCCCGCCCCTGCGGAGCCCCT
CGACCATCACAGGCATCGAGATGGAGGTCGGCCGCTCGGCGTTCGCCCGG
CTTGGCGAGCGAGGCCTCGACGACATCAAGGACCTCTCCGGGGCCGGGAT
AAGCGCGCCCGAGTCCCCAGAGGGGTACGGCCACCTCTCGGACGAGGCTG
TGGCGGCGATGGGCGCGGTCTACAGCTCCGCGGCGAGGGGCAACGCGCCG
TGCGACGGGGTCGGCCTCGCCGCGGCAAATGCCGCCGCGGCCGCCGCCGC
CACCGCCGCTGCAGCCGCCGCCGCTGCCGCCGCCGCGTCCAACAAGGCGG
TGGGGGCGGGGCAGCATCCGAGAGGAAAGGCGGCGGGATTCGGCCGAGGA
GGGTCCATGTCGTCGGGGTCATCGTCCTCCGCTTCGACCTCTTCGCCGTT
CGAGGGGTTCGGACTGAAGGAGGGAGTTAGGGCAAACACGGGCGGCGGTG
CCACGACCACGTCGGGTGCTATTGCGGCGGTGACCGGCGGAGTCTCGCGC
CTGGGTCTGGGAACCACCAAGAGCGGCGGCGGCGGCGGCAACGGCGTTTC
TCCGTCCCTCTCTTCCGCCGTCGGGCAAGTAAGCGGTGGCCTGGCGGCGG
GCGGCGGCGGCGGCGGAGGGACCGCGGGCCCCAACTCCCTCAAGACGGTC
AAGATCACCGGCACTGCCGAGGAGGTGCAGCTCGCGGAGTACCTGATCCG
GGTTAGGACCACGGGGGGCAACATGGCGGCAGCTTCGTAGGAAGAAGCCC
TTCCTGCCTAAGTGGTGTAGAGGTGAGAGAGAGAGGGAAAGGCGAGGATG
TGGGGATGGGGGTGCTAGGATAAGCACCGACTTCATGGCTGATATACACG
TTTGAGTGCGAAACAGGTAGGCTAGGACGAGGAAACCACACGAAACGCTT
GTGTTGTGCACGTGAGGGACAGCGGCTAGTGTTTGTTGGTCCTACTAGGA
TTTGGCTTTGGTTTTGTTCCGGCGAGGTCACGTTGCAACCTCCAGTCGCA
TGTAGGACTCGGTTTCGTGATGACGCCTTTGTAGGTAGCGTTGCTTGCGG
GAAGAGAGCATGCGGCTCTCACCTTGGTTGCTTTGTCCACGCCGGTCCCC
TCTTGTTATCGTTCGGATGGGACGGAGAAAGTCCAAAAACCTGGCGTTGT
TCTGTTGTAGCCCCGAAGCACGCAGACAATTGGCGAAACACCTACAACAA
TACCAATTTCTTCGACACAACACCCGAACGCCGTGTATAAACTTTTCCCG
GAGGGTCCTTGTTTTGTGTTTGTTCCTTATTCGCTCCCGGCGATCGTTCA
GTTGCAGTGTCTGTCTAACCGAAGCATGATTCTACCGGCGGCGGAAGCAG
TGCAGCGCTCGGATCAGTTTCCGTCTGTCACCTTAGGTATTATCCACCTC
AAAAATCCCACTCCCTTTCGCTCTTGTATGTCGTGGCTACTCCTGGACCT
CCTTCCACCTCCACCCAATCGGTGTGCCATGTGTCCCCGCCCGCCGGATT
ATTTTTTTTTCCGCTTGTCCAGGTTTTGAGAAAATCGATATTGACGGGCC
TGATACCTGTGTTCTCCAACCGGGGCCGGGTGAAAGAGGCGGGGACACCC
ATCACCCAGCGATCACGAGCACGTCCACCGCGTGCCGGTCGTGCCGTTCT
GCTTTCTTCTCTCCACGTTGGCGTTTCTGTATCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1164:3058..5292-

>mRNA_Ecto-sp13_S_contig1164.1419.1 ID=mRNA_Ecto-sp13_S_contig1164.1419.1|Name=mRNA_Ecto-sp13_S_contig1164.1419.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1290bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1164:3058..5292- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGCGGCGAGCTGCTGTCGCGCGAGAGCTCTGGTGGGCGCGTGAGCGG
CACCAGCACCCCGCTCCTGTCCTCGTCCGTGTCCGTGTCCAGGGACTCGC
CTCGCGGCAGCGCTGGATCCGTCGAGGACTTCGGCACCCCGGCTACAATC
GGCGCGGCCGACATGAACGGCGGCGGGGGCATGGACCGCCCGTTGCTCAC
CCGGGGGCGGTCTTCCTCGTCCTCGGGCATTGGGGGCGGCGGAGCGGCGG
CGACGGTGTTGGACTCCGGTGGCGGGGCGCGCAGCGGCGGCGGGGCCGGA
GCCCTGCACCGGGGCGGAATGCTCGGCAACATGAGCGGCAACGGTACTGG
CAACGGAGGCGTTTCCGACGACGGCGAGCTTCCCTCGTGCCTCGTGGGGA
TCCTAGACTCCTTCTTGGGAGGAGGAGGAAAATCGTACGTCTCCGACGGC
AACGGCATCCGCAGCGGCAGCGGCGGAAGCGTGGGCAACAACAACGCCAA
CGAAAAGAGCGGCAACAACAACGGCGCCGCCCCGCCCCTGCGGAGCCCCT
CGACCATCACAGGCATCGAGATGGAGGTCGGCCGCTCGGCGTTCGCCCGG
CTTGGCGAGCGAGGCCTCGACGACATCAAGGACCTCTCCGGGGCCGGGAT
AAGCGCGCCCGAGTCCCCAGAGGGGTACGGCCACCTCTCGGACGAGGCTG
TGGCGGCGATGGGCGCGGTCTACAGCTCCGCGGCGAGGGGCAACGCGCCG
TGCGACGGGGTCGGCCTCGCCGCGGCAAATGCCGCCGCGGCCGCCGCCGC
CACCGCCGCTGCAGCCGCCGCCGCTGCCGCCGCCGCGTCCAACAAGGCGG
TGGGGGCGGGGCAGCATCCGAGAGGAAAGGCGGCGGGATTCGGCCGAGGA
GGGTCCATGTCGTCGGGGTCATCGTCCTCCGCTTCGACCTCTTCGCCGTT
CGAGGGGTTCGGACTGAAGGAGGGAGTTAGGGCAAACACGGGCGGCGGTG
CCACGACCACGTCGGGTGCTATTGCGGCGGTGACCGGCGGAGTCTCGCGC
CTGGGTCTGGGAACCACCAAGAGCGGCGGCGGCGGCGGCAACGGCGTTTC
TCCGTCCCTCTCTTCCGCCGTCGGGCAAGTAAGCGGTGGCCTGGCGGCGG
GCGGCGGCGGCGGCGGAGGGACCGCGGGCCCCAACTCCCTCAAGACGGTC
AAGATCACCGGCACTGCCGAGGAGGTGCAGCTCGCGGAGTACCTGATCCG
GGTTAGGACCACGGGGGGCAACATGGCGGCAGCTTCGTAG
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