mRNA_Ecto-sp13_S_contig11548.1351.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11548.1351.1
Unique NamemRNA_Ecto-sp13_S_contig11548.1351.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11548.1351.1 vs. uniprot
Match: D8LMX2_ECTSI (Plectin isoform 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMX2_ECTSI)

HSP 1 Score: 207 bits (527), Expect = 1.820e-59
Identity = 125/132 (94.70%), Postives = 126/132 (95.45%), Query Frame = 1 
Query:    1 MVEVSGSSGESEGLGVGQGDDRKAVAIGAMERKSSKSLIARLDQAFRDMAEQQRRFAQTKRNLLAEKTMEVAAAEAKGRRELQEARTLAAAMEDKASSLQEHVSEAAKKISTFKAMEEEQRKRRQSAEEDTD 396
            MV VSGS  ESEGLG GQG DRKAVA GAMERKSSKSLIARLDQAFRDMAEQQRRFAQTKRNLLAEKTMEVAAAEAKGRRELQEARTLAAAMEDKASSLQEHVSEAAKKISTFKAMEEEQRKRRQSAEEDT+
Sbjct:  867 MVAVSGSGEESEGLGAGQGGDRKAVAPGAMERKSSKSLIARLDQAFRDMAEQQRRFAQTKRNLLAEKTMEVAAAEAKGRRELQEARTLAAAMEDKASSLQEHVSEAAKKISTFKAMEEEQRKRRQSAEEDTE 998
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11548.1351.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LMX2_ECTSI1.820e-5994.70Plectin isoform 1 n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11548contigEcto-sp13_S_contig11548:2118..3913 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score211.8
Seed ortholog evalue1.9e-52
Seed eggNOG ortholog2880.D8LMX2
Model size396
Hectar predicted targeting categoryother localisation
Exons4
EggNOG OGs28KYD@1,2QTF4@2759
Ec32 ortholog descriptionplectin isoform 1
Ec32 orthologEc-02_003950.1
Cds size396
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462606.4280736-CDS-Ecto-sp13_S_contig11548:2117..22251681462606.4280736-CDS-Ecto-sp13_S_contig11548:2117..2225Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11548 2118..2225 +
1681462606.44332-CDS-Ecto-sp13_S_contig11548:2829..29311681462606.44332-CDS-Ecto-sp13_S_contig11548:2829..2931Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11548 2830..2931 +
1681462606.4522474-CDS-Ecto-sp13_S_contig11548:3545..36411681462606.4522474-CDS-Ecto-sp13_S_contig11548:3545..3641Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11548 3546..3641 +
1681462606.4616122-CDS-Ecto-sp13_S_contig11548:3823..39131681462606.4616122-CDS-Ecto-sp13_S_contig11548:3823..3913Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11548 3824..3913 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11548.1351.1prot_Ecto-sp13_S_contig11548.1351.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11548 2118..3913 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11548.1351.1

>prot_Ecto-sp13_S_contig11548.1351.1 ID=prot_Ecto-sp13_S_contig11548.1351.1|Name=mRNA_Ecto-sp13_S_contig11548.1351.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=132bp
MVEVSGSSGESEGLGVGQGDDRKAVAIGAMERKSSKSLIARLDQAFRDMA
EQQRRFAQTKRNLLAEKTMEVAAAEAKGRRELQEARTLAAAMEDKASSLQ
EHVSEAAKKISTFKAMEEEQRKRRQSAEEDTD
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mRNA from alignment at Ecto-sp13_S_contig11548:2118..3913+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11548.1351.1 ID=mRNA_Ecto-sp13_S_contig11548.1351.1|Name=mRNA_Ecto-sp13_S_contig11548.1351.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1796bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11548:2118..3913+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTAGAGGTATCGGGGTCGAGCGGGGAGAGCGAGGGGTTGGGAGTCGG
CCAGGGCGATGACAGGAAGGCTGTTGCAATAGGCGCGATGGAGCGCAAAT
CTAGCAAGGTGAGCAATAATCGGCCATTCACCATCCAATCAATCGATTCG
TCTATCAACGCCTTCCTTGCTTGGGTAGTTCAGCCGCTAGATATCGAACG
TACCCATATGGCAGTCTGCATTGTGAGCGAGTCGCTTGCAGATGTAGCAA
GGCCGACGCAAGCCGAAGACAGCAAACGGATGTCGGTCCGAATGTATGGA
TACGACAACCTTCGTCGAGAAATGATTAAGACTTTGATTCCGCAAAAAAA
CATGGTTGGAAATGATCGGTCGATGTCGATAGGGCGAGGTCTTAATTATT
TGGTTGATATCGTCAATTGACCTTGTAACTACGCATTCCTTTCGAGACGG
TGGGGCGTCACTGACCACCTGAAACACGCATTCCTTACGAGACCTAGGGC
AGGTCCTGATCCCGACTAACATACCTCCAACACTTGATAAGAACGGAGGG
AGATATCAGTCTTGCCACCAGCGCCTGATGCTTCGCATGCATACTTCCAC
CGGCATTGTCTTGCCAGCGAAAGTTGCACACCATAATATACCGGATGGAT
GTCCTTCGGGTGAAACTCCTTCTCATTAAATGCCTCCCGTACTACGTGTG
ACATCATTTCAGAGCTTGATAGCACGGTTGGACCAAGCCTTCCGGGACAT
GGCCGAGCAGCAGCGCCGCTTTGCTCAGACCAAGCGAAATCTACTCGCCG
AGAAGACTATGGAGGTACGCGTGAGATCAACACGTTGACAAACGAGTCAC
GTGCTTTGTTCTGTAATATTCCCACTTATTGAGGGGCCCGGAAATCAGGC
CGATGAGGCCCAGTAGTGAAGCATCGTTTGAGATACTTCGTGTAAATATG
CTACGAATGTCCTGTTGGCATGCACGATCACGCCGCGCTGTTCCTTACCA
TAGACTCACTAGCGTAACGACCGTCGAAGAACCTTTGTTGAAAACCTTTG
AAATCATGCTAGACATGTACTTTGGCTTCGTCCAGGCAGCAAACTACCCC
TCCAGTCCCTACCCAGCCGCTTGGGTGGGTTCTCGTTCAGCCTCTGGCGG
GGACGCAACAAGCATGGGCGCACCTTGCTTGTTCGTGGCACTCGAACTCG
TGTAAACAGTCGCGCATATTGTCCGTTTCCTTTTGTGTCACTTCCAACAG
CTCAGGCAATCTCGTCTGGCCGAGAAGACAGTATTTTCTAGTCCCCCTCT
AGCCCTGCAATTCCTCCAACAATAGCTCTGCGTTCTCGGACATCACCCCC
CACTACACATGCAACAATACGTGCCGCGCCTTCTTGACCCAAACGTCGTC
GAAACGGCCACAACCGTACGCCGTCCAGGTAGCCGCAGCCGAGGCAAAGG
GGCGGCGCGAGCTCCAAGAAGCTCGAACCTTGGCGGCGGCCATGGAGGAC
AAAGCTTCTTCTCTACAGGAGCACGTAAGCGAATACTCGGAGACCAGGGA
GTGAAAAGTCGGGATTAGAGGGAAGGAGCGTGATCGATAGGTTGTTCGTT
TTGACCAAAACAATTATTTTCTAGCGGAGTTTCGAGCCCTGCAATACGAG
CCGAGCATCGTTGACGATTTAGAAATTTCATGCTACGATTGCAATTGACT
GAGCAGGTGTCGGAAGCAGCGAAGAAAATCTCGACCTTCAAGGCGATGGA
AGAGGAGCAGAGGAAGAGGCGTCAGTCCGCCGAAGAAGACACCGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11548:2118..3913+

>mRNA_Ecto-sp13_S_contig11548.1351.1 ID=mRNA_Ecto-sp13_S_contig11548.1351.1|Name=mRNA_Ecto-sp13_S_contig11548.1351.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=396bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11548:2118..3913+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTAGAGGTATCGGGGTCGAGCGGGGAGAGCGAGGGGTTGGGAGTCGG
CCAGGGCGATGACAGGAAGGCTGTTGCAATAGGCGCGATGGAGCGCAAAT
CTAGCAAGAGCTTGATAGCACGGTTGGACCAAGCCTTCCGGGACATGGCC
GAGCAGCAGCGCCGCTTTGCTCAGACCAAGCGAAATCTACTCGCCGAGAA
GACTATGGAGGTAGCCGCAGCCGAGGCAAAGGGGCGGCGCGAGCTCCAAG
AAGCTCGAACCTTGGCGGCGGCCATGGAGGACAAAGCTTCTTCTCTACAG
GAGCACGTGTCGGAAGCAGCGAAGAAAATCTCGACCTTCAAGGCGATGGA
AGAGGAGCAGAGGAAGAGGCGTCAGTCCGCCGAAGAAGACACCGAC
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