mRNA_Ecto-sp13_S_contig11504.1321.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11504.1321.1
Unique NamemRNA_Ecto-sp13_S_contig11504.1321.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11504.1321.1 vs. uniprot
Match: D7FVK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVK2_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 1.460e-14
Identity = 36/46 (78.26%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:    1 TIAVLGAQGATPLNVAAEKGHLEVAKVLMHAGADVNSRMPSGETPL 138
            ++    AQGATPL+ AAEKG+LEVAKV MHAGADVNSRMPSGETPL
Sbjct:    8 SVVATSAQGATPLHFAAEKGNLEVAKV-MHAGADVNSRMPSGETPL 52
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11504.1321.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVK2_ECTSI1.460e-1478.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11504contigEcto-sp13_S_contig11504:1678..1818 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size141
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size141
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462604.0585918-CDS-Ecto-sp13_S_contig11504:1677..18181681462604.0585918-CDS-Ecto-sp13_S_contig11504:1677..1818Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11504 1678..1818 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11504.1321.1prot_Ecto-sp13_S_contig11504.1321.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11504 1678..1818 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11504.1321.1

>prot_Ecto-sp13_S_contig11504.1321.1 ID=prot_Ecto-sp13_S_contig11504.1321.1|Name=mRNA_Ecto-sp13_S_contig11504.1321.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=47bp
TIAVLGAQGATPLNVAAEKGHLEVAKVLMHAGADVNSRMPSGETPL*
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mRNA from alignment at Ecto-sp13_S_contig11504:1678..1818-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11504.1321.1 ID=mRNA_Ecto-sp13_S_contig11504.1321.1|Name=mRNA_Ecto-sp13_S_contig11504.1321.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=141bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11504:1678..1818- (Ectocarpus species13 EcNAP12_S_4_19m)
ACAATAGCAGTCCTGGGTGCTCAGGGTGCCACACCGCTTAACGTCGCAGC
AGAGAAAGGGCATCTCGAGGTGGCGAAAGTGCTGATGCACGCAGGCGCTG
ACGTAAACAGCCGCATGCCCAGCGGAGAGACACCGTTGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11504:1678..1818-

>mRNA_Ecto-sp13_S_contig11504.1321.1 ID=mRNA_Ecto-sp13_S_contig11504.1321.1|Name=mRNA_Ecto-sp13_S_contig11504.1321.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=141bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11504:1678..1818- (Ectocarpus species13 EcNAP12_S_4_19m)
ACAATAGCAGTCCTGGGTGCTCAGGGTGCCACACCGCTTAACGTCGCAGC
AGAGAAAGGGCATCTCGAGGTGGCGAAAGTGCTGATGCACGCAGGCGCTG
ACGTAAACAGCCGCATGCCCAGCGGAGAGACACCGTTGTAA
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