mRNA_Ecto-sp13_S_contig1149.1303.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1149.1303.1
Unique NamemRNA_Ecto-sp13_S_contig1149.1303.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1149.1303.1 vs. uniprot
Match: D8LDV3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDV3_ECTSI)

HSP 1 Score: 163 bits (412), Expect = 4.390e-44
Identity = 86/100 (86.00%), Postives = 90/100 (90.00%), Query Frame = 1 
Query:  658 MTRVEELARRLVPGAVSTGAALLMPILARKPHGTEGTVAAGPVEASMANSAFPVLELLVNLSCADPHAIYNWLVSCSHDDGSPGGALKGLEIALNSRVEK 957
            MTRVEELAR LVPGAVSTG ALLMPILARKPH    TVAAGPV++SMA+SAFPVLELLVNLSCADPHAIYNWL SCS DDGSPGGALKGL+I LNS VEK
Sbjct:    1 MTRVEELARSLVPGAVSTGVALLMPILARKPH---STVAAGPVDSSMASSAFPVLELLVNLSCADPHAIYNWLASCSPDDGSPGGALKGLKIELNSGVEK 97
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1149.1303.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LDV3_ECTSI4.390e-4486.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1149contigEcto-sp13_S_contig1149:556..3422 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1610
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-08_003470.1
Cds size1608
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462602.4730356-CDS-Ecto-sp13_S_contig1149:557..12081681462602.4730356-CDS-Ecto-sp13_S_contig1149:557..1208Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1149 558..1208 -
1681462602.482444-CDS-Ecto-sp13_S_contig1149:1808..20221681462602.482444-CDS-Ecto-sp13_S_contig1149:1808..2022Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1149 1809..2022 -
1681462602.4912183-CDS-Ecto-sp13_S_contig1149:2679..34221681462602.4912183-CDS-Ecto-sp13_S_contig1149:2679..3422Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1149 2680..3422 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1149.1303.1prot_Ecto-sp13_S_contig1149.1303.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1149 558..3422 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1149.1303.1

>prot_Ecto-sp13_S_contig1149.1303.1 ID=prot_Ecto-sp13_S_contig1149.1303.1|Name=mRNA_Ecto-sp13_S_contig1149.1303.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=536bp
AALGELKNSLVGDDEAKRTALSLLIVEDVLTFLDVVAARGINDCYLQSAL
LHGVGLFAILSSPPVVPGLQAHLAPNGSRIVQHIVRALEWGKSSCPSSSS
VKSSSRGSNASAERLTAISLRALCACVAPLTTITYASCSSGDVGVGTASA
AFAASAASKEKFKMVTALVKASGLILEIIVAATSPTPTTSTTSRGRGTCP
TSWRWSPNLNYLGVEALAAMTRVEELARRLVPGAVSTGAALLMPILARKP
HGTEGTVAAGPVEASMANSAFPVLELLVNLSCADPHAIYNWLVSCSHDDG
SPGGALKGLEIALNSRVEKVRILAGLVLVSCFKSSKMRLGTTSSPRPSSY
QSTESPALDEIIAHRVLPLFVRTLSSWSTLPSTINGQGGGGGGSRVRGTG
GFHCSTSNNTSGSAEASFATVCGGFAAAVTAALTATTELGSLRRQREAVA
YGTVDSLVVFLKRARTEAAAAGPESVSSLSARTSTATADNNAPSGAPSSA
AATSAAAAAAAAVEESSRSMDSRLIRTATETGLKAL
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mRNA from alignment at Ecto-sp13_S_contig1149:556..3422-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1149.1303.1 ID=mRNA_Ecto-sp13_S_contig1149.1303.1|Name=mRNA_Ecto-sp13_S_contig1149.1303.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2867bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1149:556..3422- (Ectocarpus species13 EcNAP12_S_4_19m)
GCAGCCTTGGGCGAATTGAAGAACTCGCTGGTGGGGGACGACGAAGCAAA
ACGCACGGCGCTGAGTCTCCTTATCGTGGAAGACGTTCTGACGTTCCTCG
ACGTCGTTGCAGCGAGGGGAATCAACGACTGCTATCTTCAGTCGGCCTTA
CTGCACGGTGTCGGCCTGTTCGCGATTTTGAGCTCCCCGCCGGTTGTTCC
AGGCCTTCAGGCCCACCTTGCCCCCAATGGTTCGCGAATCGTCCAACACA
TTGTGCGAGCCCTGGAATGGGGTAAATCATCATGTCCTTCTTCTTCATCA
GTCAAGAGCAGCAGCCGGGGCAGCAACGCCAGCGCCGAGAGGCTGACGGC
CATCTCTCTACGGGCGCTGTGCGCATGCGTGGCTCCCCTCACAACAATCA
CCTATGCCTCCTGCTCCTCCGGTGATGTGGGGGTTGGTACTGCTTCTGCG
GCTTTTGCTGCCTCTGCTGCAAGCAAGGAAAAATTTAAGATGGTAACAGC
GCTAGTGAAAGCCTCCGGCCTAATACTGGAAATTATTGTTGCTGCCACTT
CTCCAACACCAACAACTTCAACAACGTCAAGAGGTCGAGGAACATGTCCA
ACGTCTTGGCGTTGGTCGCCGAATCTAAATTATCTCGGAGTGGAGGCGCT
GGCCGCTATGACGAGAGTGGAGGAGCTGGCAAGAAGACTCGTGCCGGGGG
CAGTGTCGACAGGGGCCGCCCTTCTCATGCCGATTCTCGCGCGGTGAGTC
GGACAGGGCATCGACACGTGGGCTGTCCACAAAAAAGTAGCTAGATTAGA
CTCTTCCTGAACTAAAAGAGTAGGAAATATTTCAAGACGTTGGGCGACAC
GCGGAGAACGAAACAGCTTGTGCCGCAATTGTTTTCTGTCACAGGATCGT
GAAAGGGAAAACGGTTTATCATGCTATACGCTGAATTCGACTCTCAGCGT
GCTACATGAACGTTTCCCAGTTTGCCGTGGCGGTTGATGGAAGGGAACAA
GAAAGAGAGTAGAACTTGTGCCTTGTGGAAAACGTCCAGTAGGCGATGTG
GGAGTTTCTTCCTCCACCTCTGCTCAAGGGACACACGTATTCCATTTTAG
CACCCAAATCACGTATTCCATTTAAGACTGCACACCAGCAGCTTGTGTAT
GACCCCAGGCTGACGCTTATGTCGCTGTGCGTAGGTCTTTCAATTCTCTT
TTGACTCCTTGTCTAAGTCCGATTAATCTTGTTCCACGTTCCGGAAGGCG
ATCAGATCGAAAACAACCTTGCTAACAATCAATGCGCCCCCCCCTGATCT
TGACCTTCCGTTCCCTCCCCAATCAGTCTCGATATACAATGTAATCGACA
ACCCCATGAACGGCAAACCCCAACCTTATCCCACCGCCGAAAACCTGTAG
AAAACCTCATGGCACCGAAGGAACTGTGGCAGCTGGTCCGGTGGAAGCGT
CAATGGCAAATTCCGCATTTCCCGTGCTGGAACTCCTGGTGAACCTATCT
TGTGCCGACCCGCATGCGATCTATAACTGGTTGGTGAGCTGCTCTCATGA
TGACGGGTCGCCCGGCGGCGCGCTCAAGGGCCTGGAGATAGCGCTTAACA
GCAGGGTTGAGAAGGTCTGGTTTAGACGAGTGAACGAAGATGACGACGGT
GGCCATATGTCGAGCTGTGTACTAGAGTTATTGTTGGTATTGTTGGCAAG
CCACAATGTTGAGTGCTCTACACGGGTGGTGACCTACAGCCCATTGGGTT
GCTCGACAACTAGCGTCGACGCGGACGATTCGCTTTGTTCCACAACATTC
TCTTCACTCCTGTCAGTCGCCAGTTTGTCCTCTCTCCGCGGTGTACCTCC
ATCACATTGAATTTGCGTCGGTTTATTCCTCTTTTGTTGATGTGTTTTCC
ACTTCTCCAAACCAATCAAACTGTCGGAGCCTTGCGGGGAACAGCCAGCG
CTCTGAGATGCGTCGAAGCCTCCCTTTCTATACGGGAAAAACATGAAACG
CGCTTCGCTCCCGTCAAACACTCTCAAGCGTTCAGAGGGTCGCAACCGAT
ACGAGGCACGTCTTAGTGTTTTCCTTCGTGTTATGTCCAACAGCGATCGG
TTTCTGGGTACATCACTTGACGTACTCCTTGTTGAGATATTCGAAAACTT
AGACCGCTTGAAGAAGCTTGCACCGCGACTTCGAATAAACACGACATCTG
ATGTTGCCACACAGGTACGAATCTTGGCTGGCTTGGTCCTGGTCAGCTGC
TTCAAAAGCAGCAAGATGAGGCTTGGAACAACGTCGTCACCCCGTCCATC
GTCATACCAGTCGACCGAATCCCCCGCCTTGGACGAGATTATCGCTCACC
GAGTTCTGCCCCTCTTTGTTCGGACGCTGAGCTCATGGTCCACCCTCCCA
TCTACAATCAATGGTCAGGGTGGTGGTGGTGGTGGCAGTAGAGTGAGAGG
GACGGGCGGATTTCACTGTTCAACATCGAATAACACCAGCGGTTCGGCGG
AGGCTAGCTTCGCGACAGTATGCGGCGGCTTTGCAGCGGCCGTGACTGCT
GCCTTAACCGCTACAACGGAGCTCGGGTCTTTGCGGCGGCAACGCGAGGC
CGTTGCGTATGGCACCGTCGACTCCCTCGTGGTGTTCCTCAAGAGAGCAC
GCACGGAGGCAGCGGCGGCCGGGCCCGAATCAGTGTCTTCACTGAGCGCC
CGCACTAGCACCGCCACTGCCGATAATAATGCGCCATCCGGGGCTCCTTC
CTCCGCTGCCGCTACTTCTGCCGCTGCCGCTGCTGCCGCTGCTGTGGAGG
AGTCGAGCCGCTCTATGGACTCCCGCCTCATTCGGACTGCTACCGAGACG
GGGCTGAAGGCACTGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1149:556..3422-

>mRNA_Ecto-sp13_S_contig1149.1303.1 ID=mRNA_Ecto-sp13_S_contig1149.1303.1|Name=mRNA_Ecto-sp13_S_contig1149.1303.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1608bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1149:556..3422- (Ectocarpus species13 EcNAP12_S_4_19m)
GCAGCCTTGGGCGAATTGAAGAACTCGCTGGTGGGGGACGACGAAGCAAA
ACGCACGGCGCTGAGTCTCCTTATCGTGGAAGACGTTCTGACGTTCCTCG
ACGTCGTTGCAGCGAGGGGAATCAACGACTGCTATCTTCAGTCGGCCTTA
CTGCACGGTGTCGGCCTGTTCGCGATTTTGAGCTCCCCGCCGGTTGTTCC
AGGCCTTCAGGCCCACCTTGCCCCCAATGGTTCGCGAATCGTCCAACACA
TTGTGCGAGCCCTGGAATGGGGTAAATCATCATGTCCTTCTTCTTCATCA
GTCAAGAGCAGCAGCCGGGGCAGCAACGCCAGCGCCGAGAGGCTGACGGC
CATCTCTCTACGGGCGCTGTGCGCATGCGTGGCTCCCCTCACAACAATCA
CCTATGCCTCCTGCTCCTCCGGTGATGTGGGGGTTGGTACTGCTTCTGCG
GCTTTTGCTGCCTCTGCTGCAAGCAAGGAAAAATTTAAGATGGTAACAGC
GCTAGTGAAAGCCTCCGGCCTAATACTGGAAATTATTGTTGCTGCCACTT
CTCCAACACCAACAACTTCAACAACGTCAAGAGGTCGAGGAACATGTCCA
ACGTCTTGGCGTTGGTCGCCGAATCTAAATTATCTCGGAGTGGAGGCGCT
GGCCGCTATGACGAGAGTGGAGGAGCTGGCAAGAAGACTCGTGCCGGGGG
CAGTGTCGACAGGGGCCGCCCTTCTCATGCCGATTCTCGCGCGAAAACCT
CATGGCACCGAAGGAACTGTGGCAGCTGGTCCGGTGGAAGCGTCAATGGC
AAATTCCGCATTTCCCGTGCTGGAACTCCTGGTGAACCTATCTTGTGCCG
ACCCGCATGCGATCTATAACTGGTTGGTGAGCTGCTCTCATGATGACGGG
TCGCCCGGCGGCGCGCTCAAGGGCCTGGAGATAGCGCTTAACAGCAGGGT
TGAGAAGGTACGAATCTTGGCTGGCTTGGTCCTGGTCAGCTGCTTCAAAA
GCAGCAAGATGAGGCTTGGAACAACGTCGTCACCCCGTCCATCGTCATAC
CAGTCGACCGAATCCCCCGCCTTGGACGAGATTATCGCTCACCGAGTTCT
GCCCCTCTTTGTTCGGACGCTGAGCTCATGGTCCACCCTCCCATCTACAA
TCAATGGTCAGGGTGGTGGTGGTGGTGGCAGTAGAGTGAGAGGGACGGGC
GGATTTCACTGTTCAACATCGAATAACACCAGCGGTTCGGCGGAGGCTAG
CTTCGCGACAGTATGCGGCGGCTTTGCAGCGGCCGTGACTGCTGCCTTAA
CCGCTACAACGGAGCTCGGGTCTTTGCGGCGGCAACGCGAGGCCGTTGCG
TATGGCACCGTCGACTCCCTCGTGGTGTTCCTCAAGAGAGCACGCACGGA
GGCAGCGGCGGCCGGGCCCGAATCAGTGTCTTCACTGAGCGCCCGCACTA
GCACCGCCACTGCCGATAATAATGCGCCATCCGGGGCTCCTTCCTCCGCT
GCCGCTACTTCTGCCGCTGCCGCTGCTGCCGCTGCTGTGGAGGAGTCGAG
CCGCTCTATGGACTCCCGCCTCATTCGGACTGCTACCGAGACGGGGCTGA
AGGCACTG
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