mRNA_Ecto-sp13_S_contig11455.1276.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11455.1276.1
Unique NamemRNA_Ecto-sp13_S_contig11455.1276.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11455.1276.1 vs. uniprot
Match: D7FX52_ECTSI (Importin N-terminal domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX52_ECTSI)

HSP 1 Score: 174 bits (440), Expect = 1.160e-48
Identity = 88/89 (98.88%), Postives = 89/89 (100.00%), Query Frame = 1 
Query:    1 SLALSMELLGETVKAVATPEALSDTSVLELVTTVVNVCAEVLSWEFKYVEAWQIPPAQQLIRPGPRWRAYLVRPDFLGAVFNVYHRVRV 267
            SLALSMELLGETVKAVATPEALSDTSVLELVTTVVNVCAEVLSWEFKYVEAWQIPPAQQLIRPGPRWRAYLVRPDFLGAVFNVYHRVR+
Sbjct:  190 SLALSMELLGETVKAVATPEALSDTSVLELVTTVVNVCAEVLSWEFKYVEAWQIPPAQQLIRPGPRWRAYLVRPDFLGAVFNVYHRVRL 278
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BLAST of mRNA_Ecto-sp13_S_contig11455.1276.1 vs. uniprot
Match: A0A6H5K5P3_9PHAE (Importin N-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5P3_9PHAE)

HSP 1 Score: 171 bits (432), Expect = 5.480e-48
Identity = 86/89 (96.63%), Postives = 87/89 (97.75%), Query Frame = 1 
Query:    1 SLALSMELLGETVKAVATPEALSDTSVLELVTTVVNVCAEVLSWEFKYVEAWQIPPAQQLIRPGPRWRAYLVRPDFLGAVFNVYHRVRV 267
            SLALSMELLGETVK VATPEALSDTSVLELVTTVVNVCAEVLSWEFKYVEAWQIPPAQQLIRPGPRWR YLVRPDFLGAVFNVYHRVR+
Sbjct:  190 SLALSMELLGETVKVVATPEALSDTSVLELVTTVVNVCAEVLSWEFKYVEAWQIPPAQQLIRPGPRWRTYLVRPDFLGAVFNVYHRVRL 278
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BLAST of mRNA_Ecto-sp13_S_contig11455.1276.1 vs. uniprot
Match: A0A7S3PXS9_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PXS9_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 2.330e-9
Identity = 32/67 (47.76%), Postives = 42/67 (62.69%), Query Frame = 1 
Query:   67 SDTSVLELVTTVVNVCAEVLSWEFKYVEA-WQIPPAQQLIRPGPRWRAYLVRPDFLGAVFNVYHRVR 264
            SD S+++    VVN+  +VLSWEF  +   W    +  L+RP   WR YL+RPDFLGAVF VY  +R
Sbjct:  283 SDPSLVDASCGVVNLTIDVLSWEFGSLGGKWGRTGSSALVRPPESWREYLIRPDFLGAVFQVYTSIR 349
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BLAST of mRNA_Ecto-sp13_S_contig11455.1276.1 vs. uniprot
Match: A0A7S2PDL1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PDL1_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 7.520e-9
Identity = 30/64 (46.88%), Postives = 38/64 (59.38%), Query Frame = 1 
Query:  100 VVNVCAEVLSWEFKYVEAW---------QIPPAQQLIRPGPRWRAYLVRPDFLGAVFNVYHRVR 264
            +V++  E+LSWEF    AW         Q+  +  LI+P   WR YL+RPDFLGAV NVY  VR
Sbjct:   27 IVSLTIEILSWEFGGGSAWNAASFASSAQVSASLVLIKPPVEWRDYLIRPDFLGAVVNVYTYVR 90
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11455.1276.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FX52_ECTSI1.160e-4898.88Importin N-terminal domain-containing protein n=1 ... [more]
A0A6H5K5P3_9PHAE5.480e-4896.63Importin N-terminal domain-containing protein n=1 ... [more]
A0A7S3PXS9_9STRA2.330e-947.76Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S2PDL1_9STRA7.520e-946.88Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11455contigEcto-sp13_S_contig11455:58..324 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score169.1
Seed ortholog evalue8.9e-40
Seed eggNOG ortholog2880.D7FX52
Model size267
KEGG koko:K18460
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.nuclear export signal receptor activity
EggNOG OGsKOG1410@1,KOG1410@2759
Ec32 ortholog descriptionArmadillo-like helical
Ec32 orthologEc-10_004340.1
Cds size252
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462600.4420013-CDS-Ecto-sp13_S_contig11455:57..3091681462600.4420013-CDS-Ecto-sp13_S_contig11455:57..309Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11455 58..309 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462600.4535909-UTR-Ecto-sp13_S_contig11455:309..3241681462600.4535909-UTR-Ecto-sp13_S_contig11455:309..324Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11455 310..324 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11455.1276.1prot_Ecto-sp13_S_contig11455.1276.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11455 58..309 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11455.1276.1

>prot_Ecto-sp13_S_contig11455.1276.1 ID=prot_Ecto-sp13_S_contig11455.1276.1|Name=mRNA_Ecto-sp13_S_contig11455.1276.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=84bp
MELLGETVKAVATPEALSDTSVLELVTTVVNVCAEVLSWEFKYVEAWQIP
PAQQLIRPGPRWRAYLVRPDFLGAVFNVYHRVRV
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mRNA from alignment at Ecto-sp13_S_contig11455:58..324-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11455.1276.1 ID=mRNA_Ecto-sp13_S_contig11455.1276.1|Name=mRNA_Ecto-sp13_S_contig11455.1276.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=267bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11455:58..324- (Ectocarpus species13 EcNAP12_S_4_19m)
AGCCTGGCGCTCTCGATGGAGCTGCTGGGGGAGACGGTTAAGGCCGTCGC
CACGCCGGAAGCCCTGTCGGATACGTCGGTACTGGAGCTCGTCACGACGG
TGGTCAACGTGTGCGCGGAGGTGCTGTCGTGGGAGTTCAAGTACGTGGAG
GCGTGGCAGATTCCGCCGGCGCAGCAGCTCATCCGGCCGGGGCCTCGGTG
GCGGGCGTACCTGGTCCGGCCGGACTTTCTCGGAGCCGTGTTCAATGTCT
ACCATCGGGTGCGTGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11455:58..324-

>mRNA_Ecto-sp13_S_contig11455.1276.1 ID=mRNA_Ecto-sp13_S_contig11455.1276.1|Name=mRNA_Ecto-sp13_S_contig11455.1276.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=252bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11455:58..324- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGCTGCTGGGGGAGACGGTTAAGGCCGTCGCCACGCCGGAAGCCCT
GTCGGATACGTCGGTACTGGAGCTCGTCACGACGGTGGTCAACGTGTGCG
CGGAGGTGCTGTCGTGGGAGTTCAAGTACGTGGAGGCGTGGCAGATTCCG
CCGGCGCAGCAGCTCATCCGGCCGGGGCCTCGGTGGCGGGCGTACCTGGT
CCGGCCGGACTTTCTCGGAGCCGTGTTCAATGTCTACCATCGGGTGCGTG
TG
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