mRNA_Ecto-sp13_S_contig11429.1261.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11429.1261.1
Unique NamemRNA_Ecto-sp13_S_contig11429.1261.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11429.1261.1 vs. uniprot
Match: D8LJL6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJL6_ECTSI)

HSP 1 Score: 248 bits (634), Expect = 7.210e-77
Identity = 128/141 (90.78%), Postives = 130/141 (92.20%), Query Frame = 1 
Query:  184 TAVRMETARKNLTARLLSDEGVRLLKHGRNGKSMHRTLRCPDQECGTLTWGKTLHDLRLMQETLQSLTTRGRVSSVARKRAERPWIEASASCSPAGPSTSPSHQRTNANK*CSASRPCWLPNEADPRFIYVSLMKILALRP 606
            TAVRME AR  LTARLLSDEGVRLLKHGRNGKSMHRTLRCPDQECGTLTWGKTLHDLRLMQETLQSLTTRG+VSSVARKRAERPWIEASAS SPAGPSTS S QRTNANK CSASRPCWLPNE DP F+ VSLMKILA RP
Sbjct:  183 TAVRMENARAYLTARLLSDEGVRLLKHGRNGKSMHRTLRCPDQECGTLTWGKTLHDLRLMQETLQSLTTRGQVSSVARKRAERPWIEASASSSPAGPSTSLSPQRTNANKWCSASRPCWLPNEGDPCFVDVSLMKILARRP 323
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BLAST of mRNA_Ecto-sp13_S_contig11429.1261.1 vs. uniprot
Match: A0A6H5KZ97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ97_9PHAE)

HSP 1 Score: 182 bits (463), Expect = 2.210e-50
Identity = 108/168 (64.29%), Postives = 120/168 (71.43%), Query Frame = 1 
Query:  184 TAVRMETARKNLTARLLSDEGVRLLKHGRNGKSMHRTLRCPDQECGTLTWGKTLHDLRLMQETLQ------SLTTRGRVSSVARKRAERPWIEASASC---SPAGPSTSPSHQRTNANK*CSASRPCWLPNEADPRFIYVSLMKILALRPRVEMR--DLDEPP-RRWG 651
            TAVRMETARK LTARLLSDEGVRLLKHGRNGKSMHRTLRCPDQECGTLTWGKTLHDLRLMQE  +      S       S + R +A R  ++ S S    S +   T  S  +TNANK CSASRPCWLPNE DP F++VSL+KILA RPRVE+   DL     R+WG
Sbjct:  228 TAVRMETARKYLTARLLSDEGVRLLKHGRNGKSMHRTLRCPDQECGTLTWGKTLHDLRLMQEVRRGTEVDPSEPNYTGTSELRRSKAGRAALDRSFSLLFPSRSLDFTVASKGKTNANKWCSASRPCWLPNEGDPCFMFVSLVKILARRPRVEVEVGDLQGARLRQWG 395
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11429.1261.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LJL6_ECTSI7.210e-7790.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KZ97_9PHAE2.210e-5064.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11429contigEcto-sp13_S_contig11429:224..4167 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1062
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-17_002480.1
Cds size426
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11429.1261.1prot_Ecto-sp13_S_contig11429.1261.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11429 1574..3621 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462599.3151896-UTR-Ecto-sp13_S_contig11429:223..3101681462599.3151896-UTR-Ecto-sp13_S_contig11429:223..310Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11429 224..310 +
1681462599.326008-UTR-Ecto-sp13_S_contig11429:1570..15731681462599.326008-UTR-Ecto-sp13_S_contig11429:1570..1573Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11429 1571..1573 +
1681462599.3826706-UTR-Ecto-sp13_S_contig11429:3621..41671681462599.3826706-UTR-Ecto-sp13_S_contig11429:3621..4167Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11429 3622..4167 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462599.3445566-CDS-Ecto-sp13_S_contig11429:1573..16421681462599.3445566-CDS-Ecto-sp13_S_contig11429:1573..1642Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11429 1574..1642 +
1681462599.3527977-CDS-Ecto-sp13_S_contig11429:2264..24741681462599.3527977-CDS-Ecto-sp13_S_contig11429:2264..2474Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11429 2265..2474 +
1681462599.3605347-CDS-Ecto-sp13_S_contig11429:2800..29271681462599.3605347-CDS-Ecto-sp13_S_contig11429:2800..2927Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11429 2801..2927 +
1681462599.3716164-CDS-Ecto-sp13_S_contig11429:3601..36211681462599.3716164-CDS-Ecto-sp13_S_contig11429:3601..3621Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11429 3602..3621 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11429.1261.1

>prot_Ecto-sp13_S_contig11429.1261.1 ID=prot_Ecto-sp13_S_contig11429.1261.1|Name=mRNA_Ecto-sp13_S_contig11429.1261.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=142bp
MKEQAGSKALEEAEAVKRIAQEEAELARRQATAVRMETARKNLTARLLSD
EGVRLLKHGRNGKSMHRTLRCPDQECGTLTWGKTLHDLRLMQETLQSLTT
RGRVSSVARKRAERPWIEASASCSPAGPSTSPSHQRTNANK*
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mRNA from alignment at Ecto-sp13_S_contig11429:224..4167+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11429.1261.1 ID=mRNA_Ecto-sp13_S_contig11429.1261.1|Name=mRNA_Ecto-sp13_S_contig11429.1261.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3944bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11429:224..4167+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTTCGAGGAAGAGGCTTCGGCGAGGGCGGCGAGGCAGGCAGAGACGGA
GGCACGGAAGGCATTGTGGCGGGCGGAAGAGGCTCAGGTGAGGCTACCGC
TGCTGCTCTTGTGCTCTTGTGGGAAGGGGTGGGTGCCTCAAAACACACGG
GGGGAAAACTACGACAATGGTTCTCACCGCCTGTAGATGAGAGCTTGTAG
TGGGGGATGGTCTGGGGAGTCGTCGCTCTCTGCTAGGCGCGAGACGATTA
GCGAGGCTGTACGCTTCCTTGGCCCCTGAATGATCTGCCATGCTATCGCT
CTTGTAGGCAGCCCCTCTAGCTGCCCTGCAGCTGCAGCTGCTACTGCTAC
TGCTGCTGCTGCGTTGATGTTTTTTGTGGCACTTGTCGTTTTTGGTGTAG
TGGCTGCTGCTACTGCGTTGATGTTCAGTGCGGTGCTTGGTGTGTTTGGG
TGCATTGGCTGCTTCTGCTGCTGCTGCTACTGCTACTGCTGCTGTTGCTG
CTGCTGTTTCTGCTGCTGTGATTAGGTTTTGGTGTGTTGATGGTTGGCTT
CTGTAGTCGGTGGTGGTGGCATGCTTTGGTTGCGGGAAACGTCGATGGTG
TAAGGACGATATTCGTAGTGTCGCATCGTGTCCATCGGCACTCGACGCAT
AGGACCGCACAAGAGTCCTGTCTTTTCTCACCCTGTCATTCCTTTCTTAC
TGATTCATTTCTGTATTTGTTTGTAGCATGTTGCCTTTCCTCATCCCATT
CAGTAGCACCAACTACCCTACGGTCTTACCCGCGTGTCTGAAAACCCTGA
TCGGGGGTCACGCAGACAAGAATTTGGTCGAGGGAAGCTTTAAGCCGTCC
TTGTCTCTCTAAAAAGGAGTCCCATGACCAAGCACTCTCCGATCCTACAG
CAAAAAGTTTCGGAGAATTGCGGGAAAGCTTCGCCGGGATCCGAATTTCC
AATGTACCAGCGACTGGGTAGATATTTTTTTTTGCCCAGTTGACCTCCTA
AGCCACCGGGGGCGATGGGCTACACGTCTACTCCACAGCTCTGGGTAGAG
TTCTTGTTACGGTGGAACATAGTAGTCAAGACCAAGTTGGGATATAGTGT
AACTTCGTCAACACGGAGTCCTCTTATCACAAACTAGAGCGCAAATTGAC
GGCAAAGCCCAGAGCCATCATTCTACCAAAAAAAAATGCGCAATGTCTTC
GAGTAATATTACGAAATTATTAGTCTTCTTGATCCTTTTTGGCTTTTACC
AACTCTTCTGTGACGCGTATCCCAATCCCCCGGCGCTCGTCTTCGCCCCC
AATTTTCCCCATTGCTGTGCCCCCCGCCCCCTCCTTGTCGCCGCCAGAAA
ATGAAGGAGCAGGCGGGGTCGAAAGCATTGGAGGAGGCAGAGGCGGTGAA
GCGGATCGCCCAAGAAGAGGTGAGATGACTCTGAAGAAAAGAAGACGTTT
CGAAAGGCGATGATTCACAGAAGATTATTCGAAACAAGAGGAGACGATTC
GAAAGACGATGATTCGTAGAAGATTATTCGAAACAAGAGGAGACGATTCG
AAAGACGATTTCTTATGGAAGAAAGTGATTCCAAGGGCGATGATTAATGA
GAGAAGGTGATTCGAAAGACAGAGAAATAAGGTTGATGTCTGTCCCCGGC
AGACAAACATTTGGTCTTGGGACCACCAGCCAACCTGCCTGTTGCAGGAC
GAGAGAGTACAACAAGGGGAGGGAGAGGAGGAAGAGGAGAAGGAGCGGTT
TTGTTGCTGGAGGAAGGCATATATATATATGTTTTGTACACCCATGGATG
ACGTCGACTGAAAGAATCTACGAAGTTTGGGTGGGGAAGACGTCAGCAGG
CGTCATTGGACAACGGATTTTTTTTTGTCGTTTTCGACATGCCCTTGTCG
TGCTTGGTACAGACGCATTCGAGCCGTAACCTCTTTTGGATCGGTTAGGG
TAACCCTTATCCTAACCGTAACCGTAACCCTATCGGTCAACCGGTTAGCG
CGGTTGATGCTAACAGCAACGACACCCGTACACATATGCAGGCGGAGCTC
GCTCGAAGGCAGGCCACGGCTGTGCGGATGGAGACCGCCAGGAAAAACCT
CACCGCGAGGTTGTTGAGCGACGAGGGGGTTAGGTTACTGAAGCACGGGC
GCAACGGGAAGAGCATGCACCGGACGCTGAGGTGCCCGGACCAGGAGTGC
GGCACTCTGACGTGGGGCAAGACTCTCCACGACCTGAGGTTGATGCAGGA
GGTACGGGTAGTGCGCTTGGTGCGACGGTTGTTGTTGTTGTTGTTATTAT
TTCTGCTGGCTGCTGCTTCTGCTGTTGCTGTTGCTGCTACTGCTGGTGTG
GGTGTTGGTGTTCTTTGTGCCGCTGCTGCTGCTGCCGCTGTTGTTGTTTC
TGTTGCTGCCGCTGCCGCTGCTGCTGCTGCTGCTGCTACTGTTGTTGTTT
CCGCTGCTATTGCTACTGTTGTGTTAATGTCGGTGGAGGTGGCGGTTCGT
GTTTCAATCTGACAATGAGTCGTAATAACATGCAGTAGTGATGACTATTT
CACAGGTCCGCAGAGGCACGGAAGTAGACCCTTCAGAGCCTAACTACACG
GGGACGAGTGAGCTCCGTCGCTCGAAAGCGGGCAGAGCGGCCTTGGATCG
AAGCTTCAGCCTCCTGTTCCCCAGCAGGTCCCTCGACTTCACCGTCGCAT
CAAAGTGAGAAACGCGCAGAGAGACAGACAGACAGACAGACAGACAGACA
GATGGACGGACAGGGAGACAGAGGGAGATAGACACAGACACATAGAGACA
GAGACAGAGGCAGGCAGAGAGAGACAGAGAGAGAGTGAGAGAGTGAGAGA
GTGAGAGAGACCAAAGATCATCACAACAAAGCGAGGAGGGTTAGAGAGAG
GGAGGGGAGGGAGAGACAAGCGAGAGAGAGAGAATGAGGCGACCAAACAA
GAGAGAAGGCAGAGACCGTGGAGATCATGGCGACAAAGTGAGGGAGGGGT
AGAGGGAGGGAGGCAGGGAGAGACTGTGAGGGGCAAACAGGAGAGAGGAA
GTGTGTGTGTGTGAGACAGACAGAGCGAGAGAGGAGGAGAAAGAGAGGAG
GCAGAGGGAGAAATACAACACCGAAAAGATGGGGATAGAGGGAGGGACGC
AGACAGAGACAGTGAGAGAGACACACTGGCAGCAGGAGAGACAAAGAGGA
GCGGGCGGACAGAAAAACAGGCAGACTGAGAGAACGCGACACACGAGCAG
GGAAGTTTCGACGGACCTTTACTTTTTCGTTTGAAAATTGTTTCTCTTCG
CATGTTGGTTGAACCTCCCTCCCTCCCCCACTCTTGGTCGTCGTGCCTCG
TTCCCATGCCCCTTGCCGCCGTTCCTAGGGACGAATGCGAACAAGTAGTG
CTCGGCTTCCAGGCCCTGCTGGCTGCCCAACGAGGCTGATCCTCGTTTTA
TATATGTGTCTTTAATGAAAATTCTCGCACTGCGGCCGCGGGTGGAGATG
AGGGATCTGGATGAACCACCCCGCCGGTGGGGCGAGTGCGTGTTTCCTCG
TGTGGCTTGTCTCGACGGTTGTTGGTTACTCGTAGGTTCTCGTGTCTTCG
TCCTTTTGCTGGCGGGAGACGGGAGTAAGGAGGGCGCGTGGGCGTCAAGG
GGCGCGCCTGCGGCGAAGGGGGGTTCCGTGCGCTTTCGGCAAGGGAGGCG
GGGGGTATATCGTGTCCGGAGGTGGAAGGAGAGAACCGACTTTGAGAAGC
GGCGTCACCCGAATGTTTGGGGAGGGAGGTTTCGCGACTTGTTGGAGTCG
CCTGTAGCAGGGCAGGACGGGGTGGATGCGGCAGCAGATGTGTAAAGGAA
CAAGTTCGGGGGGGGGGGGGGGTATCCCCAACGTAGGCATGTCAAATAAG
ATTTTGTTTCACCGAAAAAGTTGGTACATGTAGGCACCAGAGTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11429:224..4167+

>mRNA_Ecto-sp13_S_contig11429.1261.1 ID=mRNA_Ecto-sp13_S_contig11429.1261.1|Name=mRNA_Ecto-sp13_S_contig11429.1261.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=426bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11429:224..4167+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGGAGCAGGCGGGGTCGAAAGCATTGGAGGAGGCAGAGGCGGTGAA
GCGGATCGCCCAAGAAGAGGCGGAGCTCGCTCGAAGGCAGGCCACGGCTG
TGCGGATGGAGACCGCCAGGAAAAACCTCACCGCGAGGTTGTTGAGCGAC
GAGGGGGTTAGGTTACTGAAGCACGGGCGCAACGGGAAGAGCATGCACCG
GACGCTGAGGTGCCCGGACCAGGAGTGCGGCACTCTGACGTGGGGCAAGA
CTCTCCACGACCTGAGGTTGATGCAGGAGACCCTTCAGAGCCTAACTACA
CGGGGACGAGTGAGCTCCGTCGCTCGAAAGCGGGCAGAGCGGCCTTGGAT
CGAAGCTTCAGCCTCCTGTTCCCCAGCAGGTCCCTCGACTTCACCGTCGC
ATCAAAGGACGAATGCGAACAAGTAG
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