mRNA_Ecto-sp13_S_contig11395.1219.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11395.1219.1
Unique NamemRNA_Ecto-sp13_S_contig11395.1219.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig11395.1219.1 vs. uniprot
Match: D8LP41_ECTSI (Mannuronan C-5-epimerase (Partial) (Fragment) n=2 Tax=root TaxID=1 RepID=D8LP41_ECTSI)

HSP 1 Score: 549 bits (1414), Expect = 4.670e-189
Identity = 278/471 (59.02%), Postives = 343/471 (72.82%), Query Frame = 1
Query:    1 GVPANTPVPKPVCDASKSVSVSSVRYSSTSQRI*LESMDGTHGGCAALTRIHESLGPLSPLYPLETPGEWMLDEYLYVLDGITLKNYGTNIGGDCDYLKLRSDSSVIVNVRAHGGSLDLMSTKFTSWDPATGDADSDSGDGRSYISAISEVLVDSAEECEGSAKNSMGEARMDVEGSDIAYLGMEASESWGLSWKLRGICVDKFNRDSYEGIGVYGNILNSETHHLFYGQYSYRHLNAVYG-NAVHDDEIYGFDPHDASLGVTISHNTVWNDGNHGIMFAKYCHDALVTNNHVLSNYGVGFFAQLVGDSSQIMHNMIEENGDSGTGFSESSDGFVYNNTVRNNAHGIRFSVGSRDNVIAANVMEDNNGYDLYQYAGDDEVVVVESGSPMRNVFFQNVFSG-VAGLRLDYSVDTQFVSNDAVKWVDFEMRDSTNTLVLGNAFPSGMSHTPTSSCLNSASDVDFGEVCSDAAI 1407
            G  ANTP+PKP+CD+SK +SV   RYSSTS+RI LES+DG+ GGCA+ T +HE+LG  SPL+PLETPGEWML E L+VLDGITL  YGT++GGD DY+KLRSDS + V++RAHGGSLDL++TK TSWD + GD D+D  DGRS++SAISEV++D++E C GSAKN MGEARMD+E  +IA+LG E +ESWG+SWKLRG+C DK N D YEG+GVYGN+L SE H L+YG Y YR   A+   N+V+++E+YGFDPHD S+ +TISHN V+ + NHG++++KYCH+A                                    SG  F ESS G VYNNTVR N HGIRFSVGSR NV+A N  E N+GYDLYQYAG DEVV V+SG+P  NV + N+FSG V G RLD S+DTQ + N    W   EM DS NTLV GN+FP  M +T + SC+NSASDV FGEVC+DAAI
Sbjct:   20 GAQANTPIPKPICDSSKEISV---RYSSTSKRIYLESIDGSRGGCASPTMVHEALGDASPLFPLETPGEWMLSESLHVLDGITLNLYGTDVGGDVDYIKLRSDSEMTVSIRAHGGSLDLLNTKVTSWDSSKGDVDTDWSDGRSFLSAISEVVLDTSETCVGSAKNDMGEARMDIENCEIAFLGYEEAESWGISWKLRGVCNDKSNLDMYEGVGVYGNLLGSEVHDLYYGHYGYRQSFALLSRNSVYNNEVYGFDPHDDSVNITISHNDVYFNFNHGVIWSKYCHNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGIAFLESSGGLVYNNTVRENVHGIRFSVGSRQNVVAENTFEANSGYDLYQYAGSDEVVEVDSGNPTGNVIYANLFSGNVGGARLDDSIDTQLIINSVEDWASIEMVDSMNTLVQGNSFPDDMMYTSSGSCINSASDVSFGEVCTDAAI 487          
BLAST of mRNA_Ecto-sp13_S_contig11395.1219.1 vs. uniprot
Match: A0A6H5KU33_9PHAE (MEP9 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU33_9PHAE)

HSP 1 Score: 533 bits (1373), Expect = 9.370e-179
Identity = 273/478 (57.11%), Postives = 341/478 (71.34%), Query Frame = 1
Query:    1 GVPANTPVPKPVCDASKSVSVSSVRYSSTSQRI*LESMDGTHGGCAALTRIHESLGPLSPLYPLETPGEWMLDEYLYVLDGITLKNYGTNIGGDCDYLKLRSDSSVIVNVRAHGGSLDLMSTKFTSWDPATGDADSDSGDGRSYISAISEVLVDSAEECEGSAKNSMGEARMDVEGSDIAYLGMEASESWGLSWKLRGICVDKFNRDSYEGIGVYGNILNSETHHLFYGQYSYRHLNAVY-GNAVHDDEIYGFDPHDASLGVTISHNTVWNDGNHGIMFAKYCHDALVTNNHVLSNYGVGFFAQLVGDSSQIMHNMIEENGDSGTGFSESSDGFVYNNTVRNNAHGIRFSVGSRDNVIAANVMEDNNGYDLYQYAGDDEVVVVESGSPMRNVFFQNVFSG-VAGLRLDYSVDTQFVSNDAVKWVDFEMRDSTNTLVLGNAFPSGMSHTPTSSCLNSASDVDFGEVCSDAAITSPSGQS 1428
            G  ANTP+PKPVCDAS+ VSV   RYSSTSQRI +ES+DG+ GGCA+ T ++E+LG  SPL+PLETPGEWML E LYVLDGIT   +GT+ GGD DY+KLRSDS + V++RAHGGSLDL++TK TSWD + GD D+D  DGRSY+SAISEV++D++E C GSAK  MGEARMD++  +IA+LG E  ESWG+SWKLRG+C DK N D YEG+GVYGN+L+S+ H ++YG Y YR   A+  GN+V+++E+YGFDPHD S+ +TISHN V+ + NHG++++KYCH+A                                    SG  F ESS G VYNNTVR N HGIRFSVGSR NV+A N  E+N G+DLYQYAG+D VV V+SG+P  NV F N FSG   G RLD SV TQ V+N    W  F+M DS NTL+ GN FP  M +T + SC+NSASDV FG++C++AA   P  QS
Sbjct:  315 GAMANTPIPKPVCDASREVSV---RYSSTSQRIYIESVDGSRGGCASPTTVYEALGDASPLHPLETPGEWMLTESLYVLDGITFNLHGTDAGGDVDYIKLRSDSEMTVSIRAHGGSLDLLNTKVTSWDSSKGDVDTDWSDGRSYLSAISEVVLDASETCVGSAKEDMGEARMDIQNCEIAFLGYEEVESWGISWKLRGVCNDKSNLDLYEGVGVYGNLLDSDVHDMYYGHYGYRQSFALLSGNSVYNNEVYGFDPHDDSVNITISHNEVYFNFNHGVIWSKYCHNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGIAFLESSGGLVYNNTVRENVHGIRFSVGSRQNVVADNTFEENTGHDLYQYAGNDAVVEVDSGNPTSNVIFANQFSGNTGGARLDDSVGTQLVANTVEDWASFDMGDSVNTLIEGNTFPVDMMYTSSGSCINSASDVTFGDICTNAAAIDPFDQS 789          
BLAST of mRNA_Ecto-sp13_S_contig11395.1219.1 vs. uniprot
Match: D7FXE4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE4_ECTSI)

HSP 1 Score: 358 bits (919), Expect = 1.580e-115
Identity = 211/485 (43.51%), Postives = 286/485 (58.97%), Query Frame = 1
Query:   13 NTPVPKPVCDASKSVSVSSVRYSSTSQRI*LESMDG-THGGCAALTRIHESLGPLSPLYPLETP---------GEWMLDEYLYVLDGITLKNYGTNIGGDCDYLKLRSDSSVIVNVRAHGGSLDLMSTKFTSWDPATGDADSDSGDGRSYISAISEVLVDSAEECEGSAKNSMGEARMDVEGSDIAYLGMEASESWGLSWKLRGICVDKFNRDSYEGIGVYGNILNSETHHLFYGQYSYRHLNAVYG-NAVHDDEIYGFDPHDASLGVTISHNTVWNDGNHGIMFAKYCHDALVTNNHVL--SNYGVGFFAQLVGDSSQIMHNMIEENGDSGTGFSESSDGFVYNNTVRNNAHGIRFSVGSRDNVIAANVMEDNNGYDLYQYAGDDEVVVVESGSPMRNVFFQNVFSGVAG-LRLDYSVDTQFVSN-----DAVKWVDFEMRDSTNTLVLGNAFPSGMSH------TPTSSCLNSASDVDFGEVC 1392
            N P+ KP CD+   VS+   RY+ T++R+ LES DG T GGCA L +I ES    +PLY ++           G W+L E LYV DGITLK YGT+ GGD D L+L S S   +N+RAHGGSLD + TK  SWD +T   D D  DGRSYISA+SE++ D  E CEG+AKN+MGEARMD+E S+I YLG + SES+GL+WK+RG C DK N + ++ + VYGN+ +S+ HHL +G Y+Y H    +  N +HD+  YGFDPHD S  +TI  N V+N+G HGI+ +K C+   +  N V   +    G F     D + +  N + +NGD+G    ES +  V  NT  NN +G+R SVG  DNV + N++ +N+ Y+ Y Y G DE  VV SG    NVF QN FSG    +++  +  TQF+ N     DA   V     D+ N+++ GN    G+            SC +  SD  +  VC
Sbjct:   35 NDPISKPDCDSDIEVSI---RYAGTTKRLYLESADGETRGGCATLGQIWESRAGKAPLYAVDPDSGDVSETETGTWLLTEELYVEDGITLKVYGTDEGGDADELRLLSTSETYINLRAHGGSLDFVGTKVFSWDTSTNSPDEDETDGRSYISAVSEIVTDEDETCEGNAKNTMGEARMDIENSEIGYLGFQDSESYGLTWKVRGFCKDKSNPEIFDDVNVYGNMYDSDIHHLRFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNNGYHGIIASKRCNGVSIQGNEVYGGAETSAGIFLHRSSDDAIVKGNYVHDNGDAGLAMLESFNADVSENTFENNKYGVRMSVGCADNVFSENIISNNSKYNAYTYLGSDEPDVVSSGRSQNNVFSQNSFSGAEETIKIKEADGTQFLDNVFEVGDADGLV-VRFDDAMNSVMQGNT---GLDEGDFELKVTNDSCFDGESDSGYEPVC 512          
BLAST of mRNA_Ecto-sp13_S_contig11395.1219.1 vs. uniprot
Match: D7G339_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G339_ECTSI)

HSP 1 Score: 342 bits (876), Expect = 3.960e-109
Identity = 188/409 (45.97%), Postives = 250/409 (61.12%), Query Frame = 1
Query:   67 SVRYSSTSQRI*LESMDG--THGGCAALTRIHESLGPLSPLYPLE---------TPGEWMLDEYLYVLDGITLKNYGTNIGGDCDYLKLRSDSSVIVNVRAHGGSLDLMSTKFTSWDPATGDADSDSGDGRSYISAISEVLVDSAEECEGSAKNSMGEARMDVEGSDIAYLGMEASESWGLSWKLRGICVDKFNRDSYEGIGVYGNILNSETHHLFYGQYSYRHLNAVYG-NAVHDDEIYGFDPHDASLGVTISHNTVWNDGNHGIMFAKYCHDALVTNNHVL--SNYGVGFFAQLVGDSSQIMHNMIEENGDSGTGFSESSDGFVYNNTVRNNAHGIRFSVGSRDNVIAANVMEDNNGYDLYQYAGDDEVVVVESGSPMRNVFFQNVFSGVAG-LRLDYSVDTQFVSN 1248
            S+RY+ T+ R+ LES D   T GGC  L +I ES     PLY ++           G W+L E LYV DGITLK YG+  GGD D L+L S +   +N+RAHGGSLD +STK  SWD +T   D D  DGRSYISAISE++ D  E CEG+AKN+MGEARMD+E S+I YLG   SES+GL+WK+RG C DK N + ++ + VYGN+ +S+ HH+ +G Y+Y H    +  N +HD+  YGFDPHD S  +TI  N V+N+G HGI+ +K C+   +  N V   +    G F     D + +  N + +NGD+G    ES +  V  NT  NN +G+RFSVG  DNV + N + +N  Y+ Y Y G DE  VV SG    NVF QN FSG    +++  +  TQF+ N
Sbjct:   45 SIRYAGTTARLYLESADNGTTRGGCVTLGQIWESRAGKGPLYAVDPDSGNVSTSATGTWLLTEELYVEDGITLKVYGSEAGGDADELRLLSTNETFINLRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNNGYHGIIASKRCNGVSIQGNEVYGGAETSAGIFLHRSSDDAIVKGNYVHDNGDAGLAMLESFNADVSENTFENNKYGVRFSVGCADNVFSNNTISNNAEYNAYSYLGTDEPDVVSSGRSQNNVFSQNSFSGAEETIKIKEADGTQFLDN 453          
BLAST of mRNA_Ecto-sp13_S_contig11395.1219.1 vs. uniprot
Match: Q7XAJ8_9PHAE (Mannuronan C-5-epimerase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ8_9PHAE)

HSP 1 Score: 333 bits (855), Expect = 1.950e-106
Identity = 188/443 (42.44%), Postives = 266/443 (60.05%), Query Frame = 1
Query:   25 PKPVCDASKSVSVSSVRYSSTSQRI*LESMDG-THGGCAALTRIHESLGPLSPLYPLE---------TPGEWMLDEYLYVLDGITLKNYGTNIGGDCDYLKLRSDSSVIVNVRAHGGSLDLMSTKFTSWDPATGDADSDSGDGRSYISAISEVLVDSAEECEGSAKNSMGEARMDVEGSDIAYLGMEASESWGLSWKLRGICVDKFNRDSYEGIGVYGNILNSETHHLFYGQYSYRHLNAVYG-NAVHDDEIYGFDPHDASLGVTISHNTVWNDGNHGIMFAKYCHDALVTNNHVL--SNYGVGFFAQLVGDSSQIMHNMIEENGDSGTGFSESSDGFVYNNTVRNNAHGIRFSVGSRDNVIAANVMEDNNGYDLYQYAGDDEVVVVESGSPMRNVFFQN-VFSGVAGLRLDYSVDTQFVSNDAVKWVDFEMRDSTNTLVLGN 1311
            PKP CD+S +VSV   RY++ S R+ +ES +G T GGC  L +I E     SPLY ++           G W+L E +YV DGITL+ +G + GGD D L+L S S   +++RA+GGSLD +STK  +WD +    D D  DGRSYISA+SEV+ D  + C G AKN+MGEARMD+E S++AYLG   +E++GL+WK+RG CVDK N + ++ + VYGNI +S+ HH  +G Y+Y H    +  N +HD+  YGFDPHD S  +TI  N VWN+G HGI+ +K C+   +  N V   S+   G F     D+  +  N + +NGD+G    ES +  V +NT  NN +G+R SVG   N+ + NV+  +  ++ + Y G D+  VV+SG    NVF +N +  GV  + L  +  TQF+ N           D+T TL+ GN
Sbjct:    6 PKPDCDSSIAVSV---RYNAESARLYIESANGRTRGGCVTLEQIWEQQVDGSPLYAVDPKSGDVSRSATGTWLLTEEMYVEDGITLQVHGISAGGDADELRLLSTSDTFIHLRAYGGSLDFLSTKVFAWDTSKNAPDQDESDGRSYISAVSEVITDDRQTCNGRAKNNMGEARMDIENSEMAYLGYHGTETYGLTWKVRGFCVDKGNPELFDDVNVYGNIYDSDIHHNNFGVYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVWNNGYHGIIASKRCNGVSIQGNEVYGGSSGSAGIFLHRSSDNGIVKGNYVHDNGDAGLAMLESFNADVSDNTFENNKYGVRLSVGCGRNIFSKNVITGSAEFNTFSYLGADKPEVVDSGRSQDNVFMENNIIGGVESILLKEADGTQFIDNTFKDAAAIRFVDATKTLMSGN 445          
BLAST of mRNA_Ecto-sp13_S_contig11395.1219.1 vs. uniprot
Match: Q7XAJ7_9PHAE (Mannuronan C-5-epimerase n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ7_9PHAE)

HSP 1 Score: 332 bits (850), Expect = 2.390e-105
Identity = 193/447 (43.18%), Postives = 258/447 (57.72%), Query Frame = 1
Query:   13 NTPVPKPVCDASKSVSVSSVRYSSTSQRI*LESMDG-THGGCAALTRIHESLGPLSPLYPLETP---------GEWMLDEYLYVLDGITLKNYGTNIGGDCDYLKLRSDSSVIVNVRAHGGSLDLMSTKFTSWDPATGDADSDSGDGRSYISAISEVLVDSAEECEGSAKNSMGEARMDVEGSDIAYLGMEASESWGLSWKLRGICVDKFNRDSYEGIGVYGNILNSETHHLFYGQYSYRHLNAVYG-NAVHDDEIYGFDPHDASLGVTISHNTVWNDGNHGIMFAKYCHDALVTNNHVL--SNYGVGFFAQLVGDSSQIMHNMIEENGDSGTGFSESSDGFVYNNTVRNNAHGIRFSVGSRDNVIAANVMEDNNGYDLYQYAGDDEVVVVESGSPMRNVFFQN-VFSGVAGLRLDYSVDTQFVSNDAVKWVDFEMRDSTNTLVLGN 1311
            N P+PKP CD S +VS+   RYSS  +R+ LES D  T GGC  L +I E     +PLY +++          G W+L E L+V DGITLK +GT+ GGD D L+L S S   +N+RAHGGSLD +STK  +WD +    D D  DGRSY+SA+SEV+ D ++ C G AKN+MGEARMD+E S++ YLG   SES+GL+WK+RG CVDK N D +E + VYGNI +S+ HH  +G Y+Y H    +  N +HD+  YGFDPHD S  +TI  N V+++G HGI+ +K C+   +  N V   +    G F                   D+G    ES +  V +N   NN +GIRFSVGS  NV   NV+  +  Y  Y Y G D   VV+SG    NVF +N +  GV  ++L  +  TQF+ N           D+  TL+ GN
Sbjct:   28 NEPIPKPECDESIAVSI---RYSSVYERLYLESADSKTRGGCVTLEQIWEHQRGEAPLYAVDSKSGDISDSATGTWLLTEELFVEDGITLKVHGTSAGGDADELRLLSTSDTFINLRAHGGSLDFLSTKVFAWDTSINGPDRDEEDGRSYVSAVSEVITDDSQTCNGRAKNNMGEARMDIEDSEMGYLGYHGSESYGLTWKVRGFCVDKSNHDLFEDVNVYGNIYDSDIHHNNFGVYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYDNGYHGIIASKRCNGVSIQGNEVYGGATSSAGIFLHRXXXXXXXXXXXXXXXXDAGLAMMESFNADVSDNIFENNKYGIRFSVGSGRNVFFNNVISGSTRYSTYSYLGSDAPDVVDSGRSQDNVFQENNIIGGVESIKLLDADGTQFIDNTFEDATTIRFNDAKKTLMSGN 471          
BLAST of mRNA_Ecto-sp13_S_contig11395.1219.1 vs. uniprot
Match: O39824_9PHYC (GP-1 (Fragment) n=4 Tax=Phaeovirus TaxID=181085 RepID=O39824_9PHYC)

HSP 1 Score: 307 bits (787), Expect = 1.210e-99
Identity = 147/229 (64.19%), Postives = 186/229 (81.22%), Query Frame = 1
Query:   94 RI*LESMDGTHGGCAALTRIHESLGPLSPLYPLETPGEWMLDEYLYVLDGITLKNYGTNIGGDCDYLKLRSDSSVIVNVRAHGGSLDLMSTKFTSWDPATGDADSDSGDGRSYISAISEVLVDSAEECEGSAKNSMGEARMDVEGSDIAYLGMEASESWGLSWKLRGICVDKFNRDSYEGIGVYGNILNSETHHLFYGQYSYRHLNAVYG-NAVHDDEIYGFDPHDASL 777
            RI LES+DG+ GGCA+ T I+E+LG  SPL+PLET GEWML E L+VLDGITL  YGT++GGD DY+KLRSDS + V++RAHGGSLDL++TK TSWD + GD D+D  DGRS++SAISEV++D++E C GSAKN MGEARMD+E  +IA+LG E +ESWG+SWKLRG+C DK N D YEG+GVYGN+L SE H L+YG Y YR   A+   N+V+++E+YGFDPHD S+
Sbjct:    1 RIYLESVDGSRGGCASPTTIYEALGDASPLFPLETAGEWMLSESLHVLDGITLNLYGTDVGGDVDYIKLRSDSEMTVSIRAHGGSLDLLNTKVTSWDSSKGDVDTDWSDGRSFLSAISEVVLDTSETCVGSAKNDMGEARMDIENCEIAFLGYEEAESWGISWKLRGVCNDKSNLDMYEGVGVYGNLLGSEVHDLYYGHYGYRQSFALLSRNSVYNNEVYGFDPHDDSV 229          
BLAST of mRNA_Ecto-sp13_S_contig11395.1219.1 vs. uniprot
Match: A8CEP1_SACJA (Mannuronan C-5 epimerase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A8CEP1_SACJA)

HSP 1 Score: 313 bits (801), Expect = 5.160e-98
Identity = 194/477 (40.67%), Postives = 271/477 (56.81%), Query Frame = 1
Query:   13 NTPVPKPVCDASKSVSVSSVRYSSTSQRI*LESMDG-THGGCAALTRIHESLGPLSPLYPLETP---------GEWMLDEYLYVLDGITLKNYGTNIGGDCDYLKLRSDSSVIVNVRAHGGSLDLMSTKFTSWDPATGDADSDSGDGRSYISAISEVLVDSAEECEGSAKNSMGEARMDVEGSDIAYLGMEASESWGLSWKLRGICVDKFNRDSYEGIGVYGNILNSETHHLFYGQYSYRHLNAVYG-NAVHDDEIYGFDPHDASLGVTISHNTVWNDGNHGIMFAKYCHDALVTNNHVLSNYG--VGFFAQLVGDSSQIMHNMIEENGDSGTGFSESSDGFVYNNTVRNNAHGIRFSVGSRDNVIAANVMEDNNGYDLYQYAGDDEVVVVESGSPMRNVFFQNVFSG-VAGLRLDYSVDTQFVSND--AVKWVDFEMRDSTNTLVLGNAFPSGMSHTPTS-SCLNSASDVDFGEVC 1392
            N  + KP C +S  VS+   RYS TS+R+ LES DG T GGC  L  I   L   +PLY ++           G W+L E LYV DGITL+ +G + GG  D L+L S S   +N+RAHGGSLD +STK  +WD +     +D   GRSYISA+SEV+ DS ++C+G AK +MGEARMD+E S++AYLG   SES+GL+WK+RG+C D  N + ++ + VYGNI +S+ HH ++G Y+Y H    +  N +H +  YGFDPHD S  +TI  N V+N+GNHGI+ +K C+                VG F     D + +  N + +NGD+G    E+ +  V NN   +N +GIR SVG  DNV + N +  ++ Y++Y Y G D   VV+SG            SG    ++L  +  T+F+ N   + K + FE  D   TL+ GN+   G S   T  SC +  SD  +  VC
Sbjct:   28 NKAIAKPSCKSSTKVSI---RYSKTSKRLYLESADGNTRGGCVTLEDIWRDLDGGAPLYAVKPSSGDVSSSITGTWLLTESLYVEDGITLQVHGKSAGGKADELRLLSTSKDFINLRAHGGSLDFVSTKVFAWDTSKNKVRTDDSKGRSYISAVSEVITDSKQKCDGRAKKNMGEARMDIEDSEMAYLGYFGSESYGLTWKVRGLCRDLSNLEVFDAVNVYGNIYDSDIHHNYFGVYTYGHEQGDWRRNKMHHNTEYGFDPHDDSDFLTIHDNEVYNNGNHGIIASKRCNGXXXXXXXXXXGAAKSVGIFLHRSSDDAIVKDNYVHDNGDAGMALMETFNADVSNNKFEDNKYGIRMSVGCADNVFSKNDITGSSKYNVYTYQGSDAPWVVDSGRSQDXXXXXXXXSGGQETVKLTMADGTEFIDNTFKSAKTIRFE--DCQGTLMSGNSGLGGASLKVTDGSCFDKKSDSAYKPVC 499          
BLAST of mRNA_Ecto-sp13_S_contig11395.1219.1 vs. uniprot
Match: D7FXE5_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE5_ECTSI)

HSP 1 Score: 303 bits (777), Expect = 1.140e-95
Identity = 164/357 (45.94%), Postives = 222/357 (62.18%), Query Frame = 1
Query:   67 SVRYSSTSQRI*LESMDG--THGGCAALTRIHESLGPLSPLYPLE---------TPGEWMLDEYLYVLDGITLKNYGTNIGGDCDYLKLRSDSSVIVNVRAHGGSLDLMSTKFTSWDPATGDADSDSGDGRSYISAISEVLVDSAEECEGSAKNSMGEARMDVEGSDIAYLGMEASESWGLSWKLRGICVDKFNRDSYEGIGVYGNILNSETHHLFYGQYSYRHLNAVYG-NAVHDDEIYGFDPHDASLGVTISHNTVWNDGNHGIMFAKYCHDALVTNNHVL--SNYGVGFFAQLVGDSSQIMHNMIEENGDSGTGFSESSDGFVYNNTVRNNAHGIRFSVGSRDNVIAANVMEDN 1095
            S+RY+ ++ R+ LES D   T GGC  L +I ES     PLY ++           G W+L E LYV DGITL+ YG+  GGD D L+L S +   +N+RAHGGSLD +STK  SWD +T   D D  DGRSYISAISE++ D  E CEG+AKN+MGEARMD+E S+I YLG   SES+GL+WK+RG C DK N + ++ + VYGN+ +S+ HH+ +G Y+Y H    +  N +HD+  YGFDPHD S  +TI  N V+N+G HGI+ +K C+   +  N V   +    G F     D + +  N + +NGD+G    ES +  V  NT  NN +G+RFSVG  DNV + N + +N
Sbjct:   45 SIRYAESTARLYLESADNGTTRGGCVTLGQIWESRAGKGPLYAVDPDSGNVSTSATGTWLLTEELYVEDGITLEVYGSEAGGDADELRLLSTNETFINLRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNNGYHGIIASKRCNGVSIQGNEVYGGAETSAGIFLHRSSDDAIVKGNYVHDNGDAGLAMLESFNADVSENTFENNKYGVRFSVGCADNVFSNNTISNN 401          
BLAST of mRNA_Ecto-sp13_S_contig11395.1219.1 vs. uniprot
Match: Q7XAK2_9PHAE (Mannuronan C-5-epimerase n=2 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAK2_9PHAE)

HSP 1 Score: 304 bits (779), Expect = 1.090e-94
Identity = 184/475 (38.74%), Postives = 262/475 (55.16%), Query Frame = 1
Query:   13 NTPVPKPVCDASKSVSVSSVRYSSTSQRI*LESMDG-THGGCAALTRIHESLGPLSPLYPLE---------TPGEWMLDEYLYVLDGITLKNYGTNIGGDCDYLKLRSDSSVIVNVRAHGGSLDLMSTKFTSWDPATGDADSDSGDGRSYISAISEVLVDSAEECEGSAKNSMGEARMDVEGSDIAYLGMEASESWGLSWKLRGICVDKFNRDSYEGIGVYGNILNSETHHLFYGQYSYRHLNAVYG-NAVHDDEIYGFDPHDASLGVTISHNTVWNDGNHGIMFAKYCHDALVTNNHVL--SNYGVGFFAQLVGDSSQIMHNMIEENGDSGTGFSESSDGFVYNNTVRNNAHGIRFSVGSRDNVIAANVMEDNNGYDLYQYAGDDEVVVVESGSPMRNVFFQNVFSGV-AGLRLDYSVDTQFVSNDAVKWVDFEMRDSTNTLVLGNA-FPSGMSHTPTSSCLNSASDVDFGEVC 1392
            N  + KP C +S  VS+   RYS++S+R+ LES DG T GGC  L  I + L   +PLY ++           G W+L E LYV DGITL+ +GT+ GG+ + L+L S S   +N+RAHGGSLD +STK  +WD +     +D    RSYISA+SE++ DS E+C+G AK +MGEARMD+E S++AYLG + SES+GL+WK+RG C D  N + ++ + VYGNI +S+ HH  +G Y+Y H    +  N +H +  YGFDPHD S  +TI  N V                           S+  VG F     D + +  N    NGD+G    ES +  V NN   +N +G+R SVG  DNV + NV+ D++ Y++Y Y G D+  VV+SG    N+F  N  +G    ++L  +  T+F+ N   +       D+  TL+ GN    S        +C +  SD D+  VC
Sbjct:   31 NKAISKPSCKSSTKVSI---RYSASSKRLYLESADGKTRGGCVTLEEIWKDLDGSAPLYAVKPSSGDVSSSATGTWLLTEDLYVEDGITLQVHGTSAGGNANELRLLSTSKDFINLRAHGGSLDFVSTKVFAWDTSKNKVRTDGSKARSYISAVSEIITDSKEKCDGKAKKTMGEARMDIEDSEMAYLGYQGSESYGLTWKVRGFCKDGSNPEVFDEVNVYGNIYDSDIHHNHFGVYTYGHEQGDWRRNKMHHNREYGFDPHDDSDFLTIHDNKVXXXXXXXXXXXXXXXXXXXXXXXXXXGSSKSVGIFLHRSSDDAIVKDNXXXXNGDAGMALMESFNADVSNNKFEDNKYGVRLSVGCADNVFSKNVISDSSKYNVYTYEGSDDPWVVDSGRSQDNIFSDNTITGGDESIKLTMADGTEFIDNTFKRAKTARFEDAETTLMSGNTGLGSATLKVSKGACFDKKSDSDYKPVC 502          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11395.1219.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LP41_ECTSI4.670e-18959.02Mannuronan C-5-epimerase (Partial) (Fragment) n=2 ... [more]
A0A6H5KU33_9PHAE9.370e-17957.11MEP9 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7FXE4_ECTSI1.580e-11543.51Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7G339_ECTSI3.960e-10945.97Mannuronan C-5-epimerase n=2 Tax=Ectocarpus silicu... [more]
Q7XAJ8_9PHAE1.950e-10642.44Mannuronan C-5-epimerase (Fragment) n=1 Tax=Lamina... [more]
Q7XAJ7_9PHAE2.390e-10543.18Mannuronan C-5-epimerase n=1 Tax=Laminaria digitat... [more]
O39824_9PHYC1.210e-9964.19GP-1 (Fragment) n=4 Tax=Phaeovirus TaxID=181085 Re... [more]
A8CEP1_SACJA5.160e-9840.67Mannuronan C-5 epimerase n=1 Tax=Saccharina japoni... [more]
D7FXE5_ECTSI1.140e-9545.94Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
Q7XAK2_9PHAE1.090e-9438.74Mannuronan C-5-epimerase n=2 Tax=Laminaria digitat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11395contigEcto-sp13_S_contig11395:2462..3892 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score258.5
Seed ortholog evalue5.8e-66
Seed eggNOG ortholog2880.D8LC73
Model size1431
KEGG koko:K11244
KEGG Pathwayko04011,ko04139,map04011,map04139
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
Cds size1320
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462596.452373-UTR-Ecto-sp13_S_contig11395:2461..25721681462596.452373-UTR-Ecto-sp13_S_contig11395:2461..2572Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11395 2462..2572 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462596.463334-CDS-Ecto-sp13_S_contig11395:2572..38921681462596.463334-CDS-Ecto-sp13_S_contig11395:2572..3892Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11395 2573..3892 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11395.1219.1prot_Ecto-sp13_S_contig11395.1219.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11395 2573..3892 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11395.1219.1

>prot_Ecto-sp13_S_contig11395.1219.1 ID=prot_Ecto-sp13_S_contig11395.1219.1|Name=mRNA_Ecto-sp13_S_contig11395.1219.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=440bp
MDGTHGGCAALTRIHESLGPLSPLYPLETPGEWMLDEYLYVLDGITLKNY
GTNIGGDCDYLKLRSDSSVIVNVRAHGGSLDLMSTKFTSWDPATGDADSD
SGDGRSYISAISEVLVDSAEECEGSAKNSMGEARMDVEGSDIAYLGMEAS
ESWGLSWKLRGICVDKFNRDSYEGIGVYGNILNSETHHLFYGQYSYRHLN
AVYGNAVHDDEIYGFDPHDASLGVTISHNTVWNDGNHGIMFAKYCHDALV
TNNHVLSNYGVGFFAQLVGDSSQIMHNMIEENGDSGTGFSESSDGFVYNN
TVRNNAHGIRFSVGSRDNVIAANVMEDNNGYDLYQYAGDDEVVVVESGSP
MRNVFFQNVFSGVAGLRLDYSVDTQFVSNDAVKWVDFEMRDSTNTLVLGN
AFPSGMSHTPTSSCLNSASDVDFGEVCSDAAITSPSGQSD
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mRNA from alignment at Ecto-sp13_S_contig11395:2462..3892+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11395.1219.1 ID=mRNA_Ecto-sp13_S_contig11395.1219.1|Name=mRNA_Ecto-sp13_S_contig11395.1219.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1431bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11395:2462..3892+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTGTACCTGCCAACACACCCGTCCCCAAACCGGTGTGCGATGCGTCGAA GAGTGTGTCGGTGTCGTCGGTGAGGTACAGCTCCACCTCCCAGCGGATAT AGTTGGAGTCGATGGATGGCACGCACGGCGGTTGTGCCGCTCTGACGAGA ATTCACGAGTCGCTCGGCCCCCTCAGCCCGCTCTACCCTCTCGAAACTCC CGGGGAGTGGATGCTCGATGAGTATCTGTACGTGCTCGATGGCATAACCC TAAAAAATTACGGCACTAACATCGGGGGCGACTGTGATTACCTGAAGTTG CGTAGCGATTCCTCGGTGATCGTGAATGTTCGCGCACACGGTGGGTCGCT CGACTTGATGAGCACAAAGTTTACCTCGTGGGACCCTGCGACTGGTGACG CTGACTCTGACTCGGGTGATGGTCGCTCGTACATCAGCGCCATCTCCGAG GTGTTGGTTGATTCGGCTGAAGAGTGCGAGGGTTCGGCAAAAAATAGCAT GGGGGAGGCTCGTATGGACGTGGAGGGGAGCGACATAGCTTATTTAGGTA TGGAAGCTTCCGAAAGCTGGGGATTGAGTTGGAAATTGCGGGGTATCTGC GTTGACAAGTTCAACCGAGACAGTTATGAGGGTATTGGTGTATACGGGAA CATTCTGAACAGCGAAACACATCACTTGTTCTATGGTCAGTACTCCTATC GCCACTTGAACGCAGTGTATGGTAACGCCGTGCATGACGACGAGATTTAC GGCTTTGATCCGCACGATGCTTCCCTCGGTGTTACTATTTCGCACAATAC CGTGTGGAACGACGGGAACCATGGCATCATGTTTGCAAAGTATTGTCACG ATGCCTTGGTTACCAACAATCACGTGCTCTCGAATTATGGTGTTGGTTTT TTCGCCCAGCTCGTCGGCGACTCTTCGCAGATCATGCACAACATGATTGA GGAGAACGGTGACTCTGGGACAGGGTTCTCGGAGTCCTCCGATGGCTTTG TGTACAACAACACTGTGCGAAACAACGCTCACGGCATTCGTTTCTCGGTA GGCTCGCGTGACAACGTGATTGCCGCCAACGTGATGGAAGACAACAACGG GTATGATCTATATCAGTACGCCGGCGACGATGAGGTGGTCGTGGTTGAGA GCGGTAGTCCAATGCGCAATGTGTTTTTCCAGAACGTGTTTTCCGGTGTT GCGGGTCTGCGACTGGACTACTCTGTGGACACGCAGTTTGTGTCGAACGA TGCTGTGAAATGGGTGGATTTTGAGATGCGGGATTCTACCAACACACTGG TTTTGGGGAACGCTTTCCCGTCTGGTATGAGCCACACTCCTACGAGCTCT TGTCTGAACTCTGCGTCTGACGTTGACTTTGGCGAGGTTTGCAGCGACGC TGCTATCACCAGCCCTTCTGGCCAGTCGGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11395:2462..3892+

>mRNA_Ecto-sp13_S_contig11395.1219.1 ID=mRNA_Ecto-sp13_S_contig11395.1219.1|Name=mRNA_Ecto-sp13_S_contig11395.1219.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1320bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11395:2462..3892+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGATGGCACGCACGGCGGTTGTGCCGCTCTGACGAGAATTCACGAGTC
GCTCGGCCCCCTCAGCCCGCTCTACCCTCTCGAAACTCCCGGGGAGTGGA
TGCTCGATGAGTATCTGTACGTGCTCGATGGCATAACCCTAAAAAATTAC
GGCACTAACATCGGGGGCGACTGTGATTACCTGAAGTTGCGTAGCGATTC
CTCGGTGATCGTGAATGTTCGCGCACACGGTGGGTCGCTCGACTTGATGA
GCACAAAGTTTACCTCGTGGGACCCTGCGACTGGTGACGCTGACTCTGAC
TCGGGTGATGGTCGCTCGTACATCAGCGCCATCTCCGAGGTGTTGGTTGA
TTCGGCTGAAGAGTGCGAGGGTTCGGCAAAAAATAGCATGGGGGAGGCTC
GTATGGACGTGGAGGGGAGCGACATAGCTTATTTAGGTATGGAAGCTTCC
GAAAGCTGGGGATTGAGTTGGAAATTGCGGGGTATCTGCGTTGACAAGTT
CAACCGAGACAGTTATGAGGGTATTGGTGTATACGGGAACATTCTGAACA
GCGAAACACATCACTTGTTCTATGGTCAGTACTCCTATCGCCACTTGAAC
GCAGTGTATGGTAACGCCGTGCATGACGACGAGATTTACGGCTTTGATCC
GCACGATGCTTCCCTCGGTGTTACTATTTCGCACAATACCGTGTGGAACG
ACGGGAACCATGGCATCATGTTTGCAAAGTATTGTCACGATGCCTTGGTT
ACCAACAATCACGTGCTCTCGAATTATGGTGTTGGTTTTTTCGCCCAGCT
CGTCGGCGACTCTTCGCAGATCATGCACAACATGATTGAGGAGAACGGTG
ACTCTGGGACAGGGTTCTCGGAGTCCTCCGATGGCTTTGTGTACAACAAC
ACTGTGCGAAACAACGCTCACGGCATTCGTTTCTCGGTAGGCTCGCGTGA
CAACGTGATTGCCGCCAACGTGATGGAAGACAACAACGGGTATGATCTAT
ATCAGTACGCCGGCGACGATGAGGTGGTCGTGGTTGAGAGCGGTAGTCCA
ATGCGCAATGTGTTTTTCCAGAACGTGTTTTCCGGTGTTGCGGGTCTGCG
ACTGGACTACTCTGTGGACACGCAGTTTGTGTCGAACGATGCTGTGAAAT
GGGTGGATTTTGAGATGCGGGATTCTACCAACACACTGGTTTTGGGGAAC
GCTTTCCCGTCTGGTATGAGCCACACTCCTACGAGCTCTTGTCTGAACTC
TGCGTCTGACGTTGACTTTGGCGAGGTTTGCAGCGACGCTGCTATCACCA
GCCCTTCTGGCCAGTCGGAC
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