mRNA_Ecto-sp13_S_contig11389.1214.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11389.1214.1
Unique NamemRNA_Ecto-sp13_S_contig11389.1214.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11389.1214.1 vs. uniprot
Match: D7FPX3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPX3_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 2.420e-11
Identity = 40/82 (48.78%), Postives = 55/82 (67.07%), Query Frame = 2 
Query:  353 RHRVEAPSEGTVTGNVRAVYEDMSAGILNRWGAEYEDT-LFSDAMAWGADGGQVVKDKMLNAVLEQDSFVAAFTGERYRLAH 595
            +H   A   G V  N R+VY ++S+ IL RWG +Y +T LFS  M + +DGG+VV++KMLNAV+EQ+ F+AAFTG      H
Sbjct:  155 QHASVAQPPGAVLENARSVYSEISSDILTRWGYKYANTPLFSGGMKF-SDGGKVVENKMLNAVVEQEGFLAAFTGVSTTAGH 235
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11389.1214.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FPX3_ECTSI2.420e-1148.78Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11389contigEcto-sp13_S_contig11389:1247..4454 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score73.9
Seed ortholog evalue9.8e-11
Seed eggNOG ortholog2880.D7FPX3
Model size928
Hectar predicted targeting categorysignal peptide
Exons2
EggNOG OGs2EABQ@1,2SGK3@2759
Cds size636
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462596.0535312-UTR-Ecto-sp13_S_contig11389:1246..13641681462596.0535312-UTR-Ecto-sp13_S_contig11389:1246..1364Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11389 1247..1364 +
1681462596.0836556-UTR-Ecto-sp13_S_contig11389:4280..44541681462596.0836556-UTR-Ecto-sp13_S_contig11389:4280..4454Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11389 4281..4454 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462596.0649357-CDS-Ecto-sp13_S_contig11389:1364..16821681462596.0649357-CDS-Ecto-sp13_S_contig11389:1364..1682Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11389 1365..1682 +
1681462596.0747113-CDS-Ecto-sp13_S_contig11389:3962..42801681462596.0747113-CDS-Ecto-sp13_S_contig11389:3962..4280Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11389 3963..4280 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11389.1214.1prot_Ecto-sp13_S_contig11389.1214.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11389 1365..4280 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11389.1214.1

>prot_Ecto-sp13_S_contig11389.1214.1 ID=prot_Ecto-sp13_S_contig11389.1214.1|Name=mRNA_Ecto-sp13_S_contig11389.1214.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=212bp
MLNRKVVFRCAGAGVAATIVLLSAAERAITQERGTAVSPLSSLLPPASSS
ELDSDHHNDDGASTAGCEVPYYAIVPERRHRVEAPSEGTVTGNVRAVYED
MSAGILNRWGAEYEDTLFSDAMAWGADGGQVVKDKMLNAVLEQDSFVAAF
TGERYRLAHYVEGGGEKAGGMYAQADRTRVPLGGLAVTVEERIAWILKLL
ARGLEFVGLLW*
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mRNA from alignment at Ecto-sp13_S_contig11389:1247..4454+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11389.1214.1 ID=mRNA_Ecto-sp13_S_contig11389.1214.1|Name=mRNA_Ecto-sp13_S_contig11389.1214.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3208bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11389:1247..4454+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCCCCCATTTACCGCTCGTTCGTCGATTGGTTGGAACTTAACCTGAGCAG
CAACCGCGTTCACACCACCCCCACCTCCGCCATAGCAGATAAAATCATCC
TCCGGCAATCCTGCAACGATGCTGAATCGGAAGGTCGTCTTCCGATGCGC
GGGAGCAGGGGTGGCTGCGACCATCGTCTTGTTGTCTGCTGCAGAGCGCG
CCATCACACAAGAAAGAGGCACCGCCGTTAGCCCGCTATCGAGCTTGTTG
CCTCCAGCATCGTCATCGGAGTTGGATTCTGACCATCATAATGATGATGG
GGCAAGCACGGCAGGGTGCGAGGTGCCTTATTACGCGATTGTGCCGGAGC
GCAGGCACCGGGTGGAGGCGCCGTCTGAGGGCACCGTGACAGGAAATGTG
CGGGCGGTCTACGAAGACATGTCTGCAGGGATATTGGTGCGTTAGTTCCT
TGCTTTACTGTAGACTGCTGTAGCTAGAGCAGCTGTGTTCTTGCAGCAGC
TGTGCATACCATGGTTGCATCTAAACAAGGTCGTATGACGGGCGGGTGTG
TGCAATTCCTCGGCCCGAACTGTCCAACTTCCTTTCCTTGCTGGTCCGCG
GTCGTTGGGGCTTTGCACGCCGTCATCGTCTATTGGTATAAACTGTACGC
GGGGCGCGGGTGCTGGAATGTCGCAATGGCTGCGCGATACGCACAGTCTA
CTCTGGGTCCACGAAGAGCAGCAACGGCTTCAAGTTGCAGTATCGTTGTT
GGCTTGTCGCGAACGGCCGCACTGCTTTGCTGCACGACAGGGTCTTGCTG
CACTCAACTTTTGCTACATACAAACATGTGGGAGGTGTGCAGCACCCACT
CCCTCTGTAGATGCATTGCGCGCAAGACAGAAAACATCAGCAAGTGTGCT
CTAGCACAGATCGAACACCATGCGGGAGGAAAGTTCTCATTTCCTGTCGG
GCAAACATCGTGGTGTGTGTGTGTGATGTGGAAATCCCGAGAGAGAGGAG
ACGGCGCAACCTTCATTTAGGAGAAATAATTACACGCACAGAGTGACTAC
CCATTCGAGATATACCCACAGCAGTCGAACGGGATGTGGTGGAGTCTTTT
CAGCAACCTTCATGTAAAAACAGTATGCATGCTAGACATGAGCTGCTAGA
CATTTGAGAGCTCGTCGCTTTGGCTCAAAAATTCCCCAAGTAGGCAGTGG
TGTACTGCGTGTCGAACAGGCACACCCCTAGCACACCAGCCTTGAAGCTA
CAATGGCCAAGGCACCAACCTACAGCATCTGTGCACGCCGGAGTTGTAAG
CACTCGCCCGGCAGACTAGAGCAGCAGTACTACGCTGCTGTACACCCAGC
TACCGCCGAATGCGTATGCTAGCTGCGCCATTATTATTCTGCTGTGCTGT
GCGCACCCCGAGTATATAGCGTGCCCGCGCATGCGAAACAAAAAGGAAAC
CTGGTGTACATGTACGCACAGCGGTCACAGCGGCGGCGGGAGCACGCAAA
CCGCGAAACCGCGAAAGGCTTCACCGCAGTAAAAACCGACCACTGTAGGC
CGGCCAAGAGTTAAAGCGTGTTGTAATGTCTTACGCCACACTGCTGGAAC
TGCTGTAAATAGATGCCGAAGGCGGGAAAACAGCGGCAGCAGCAGCGTCA
AAATCATGATTTCGTGCATGTGTTTTCATCTCTTCGCGCAAGTTTAGGGA
GAACGTGAACGAACCTCACCAGCAAGGCGTACTTCCGTCGTGTACTCTGC
AGTACAACTGTAGGCTATACATGTAGGCTACATATGGCCATGTACGGAGT
TGATCACGGAGACTTGTTAGTTGCATGGAAATATTCTGTTGAAAAGTTAC
TCTCCGTTGGTATGTTGGTATACAGCAGTACCTGTGGTCTTACTGCTTGC
GTACTCTGACATATCCCCTGCACGCTACACACACAGGAACACCGAACGCG
CCCGCACTTGAGAACCCAGGAGTAAGAAATGGACCCGAAAATCGAGTTTG
AAGAACTTGAGCACTCCTTTTACTTTTTATTAGGGCGGTTAAGAACTACA
CCAAAACCTATGTATTGCGATCATTCGTAATTCGTAGCATGGCCCTCGGA
ACTGAGAACCCCAATAGGCATGGGGCAGAACGCGCTTTCCCGTAAAACAA
CGAAACTGCTGTTGGACATTTCTTTACTAATTGATAAGCTGCCCGGCTCT
ATGAGCATCCCGCCGTCCAACTGACGAAGACGAAATCCTTGCACCACAGG
GTAACTACCCGAAGATGGTACGTGTGCACCCTCTTCTGGCAAACCATTAC
CCAAGTGAACATGGTAGTACATACTTCTACGAAGTAGCACTCAGTAGCCC
ACCCCATTCAACATGGTGTGGGTAAATGAGAGTCGCCAGTCGAGCAGTAA
AATCTGCCCACTTATTGGAAACACTTGCCGTCTCGAGTCTGCGTGTGGCC
ATTTTCCACGTACCTCCCTCGATTGTCGTGTCTTCCGCACTGCGGTTCCA
CGACAGGTCTACTGATTGTAGAAGACATGTCCTAGGCCAAGGGCTGCCCG
AAAAACAACGAAGAAAAAAAAGCAAACAGCAGTAGTGTGAACATGTCAAG
ACAGACCCCTGCAACGGCGAAATAGGCATTATTTAATGAAGTGGTTCATA
CTTCCGACCACGTCCCACGTTTGAGTGACTGAGATATTCGCAACATGCTC
GTGTTTCTTGGGACAGAACCGATGGGGTGCCGAGTACGAAGACACGCTGT
TCTCCGATGCCATGGCATGGGGAGCAGACGGGGGACAGGTGGTGAAGGAC
AAGATGCTTAACGCGGTGCTGGAGCAGGATAGTTTCGTGGCAGCTTTTAC
AGGCGAGAGATACAGGCTTGCTCATTATGTAGAGGGAGGGGGAGAGAAGG
CGGGAGGAATGTACGCGCAGGCAGACAGAACGAGAGTTCCCCTGGGAGGG
TTGGCTGTAACAGTAGAAGAGCGGATAGCTTGGATACTCAAGCTGCTGGC
TCGCGGTCTCGAGTTTGTTGGGTTGTTGTGGTGATGTTAGTCTGATCGTG
AGGTGCCTTGCTCTTCGTTCTCGGTGCTATGCACAGCCTGCGATGCCGTC
CTGCGCTATACTAGTGACCCGTGACACTCGCCCGCTCGTGAACAGGACCC
CAGAAGCTTTTGCAGGAACCTGCACATCCAAGCGGGAATAATGGGAGACA
GGAATACC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11389:1247..4454+

>mRNA_Ecto-sp13_S_contig11389.1214.1 ID=mRNA_Ecto-sp13_S_contig11389.1214.1|Name=mRNA_Ecto-sp13_S_contig11389.1214.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=636bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11389:1247..4454+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGAATCGGAAGGTCGTCTTCCGATGCGCGGGAGCAGGGGTGGCTGC
GACCATCGTCTTGTTGTCTGCTGCAGAGCGCGCCATCACACAAGAAAGAG
GCACCGCCGTTAGCCCGCTATCGAGCTTGTTGCCTCCAGCATCGTCATCG
GAGTTGGATTCTGACCATCATAATGATGATGGGGCAAGCACGGCAGGGTG
CGAGGTGCCTTATTACGCGATTGTGCCGGAGCGCAGGCACCGGGTGGAGG
CGCCGTCTGAGGGCACCGTGACAGGAAATGTGCGGGCGGTCTACGAAGAC
ATGTCTGCAGGGATATTGAACCGATGGGGTGCCGAGTACGAAGACACGCT
GTTCTCCGATGCCATGGCATGGGGAGCAGACGGGGGACAGGTGGTGAAGG
ACAAGATGCTTAACGCGGTGCTGGAGCAGGATAGTTTCGTGGCAGCTTTT
ACAGGCGAGAGATACAGGCTTGCTCATTATGTAGAGGGAGGGGGAGAGAA
GGCGGGAGGAATGTACGCGCAGGCAGACAGAACGAGAGTTCCCCTGGGAG
GGTTGGCTGTAACAGTAGAAGAGCGGATAGCTTGGATACTCAAGCTGCTG
GCTCGCGGTCTCGAGTTTGTTGGGTTGTTGTGGTGA
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