mRNA_Ecto-sp13_S_contig11361.1196.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11361.1196.1
Unique NamemRNA_Ecto-sp13_S_contig11361.1196.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig11361.1196.1 vs. uniprot
Match: D7G810_ECTSI (Thioredoxin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G810_ECTSI)

HSP 1 Score: 204 bits (519), Expect = 1.170e-65
Identity = 103/107 (96.26%), Postives = 104/107 (97.20%), Query Frame = 1
Query:    1 QRTEPLLVVDFTASWCKPCRAMAPIFEGLAKENKGAAAVFAKVDIDNLPETFDGTSIPAFYVFKNGVTVDSVTGSGESKLRKLVADHVGQQQGDGSGASPPD-KKVQ 318
            +RTEPLLVVDFTASWCKPCRAMAPIFEGLAKENKGAAAVFAKVDIDNLPETFDGTSIPAFYVFKNGV VDSVTGSGESKLRKLVADHVGQQQ DGSGASPPD KKVQ
Sbjct:   61 KRTEPLLVVDFTASWCKPCRAMAPIFEGLAKENKGAAAVFAKVDIDNLPETFDGTSIPAFYVFKNGVKVDSVTGSGESKLRKLVADHVGQQQEDGSGASPPDDKKVQ 167          
BLAST of mRNA_Ecto-sp13_S_contig11361.1196.1 vs. uniprot
Match: UPI00106A16E7 (thioredoxin-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106A16E7)

HSP 1 Score: 84.7 bits (208), Expect = 3.620e-19
Identity = 40/87 (45.98%), Postives = 60/87 (68.97%), Query Frame = 1
Query:    1 QRTEPLLVVDFTASWCKPCRAMAPIFEGLAKENKGAAAVFAKVDIDNLPETFDG---TSIPAFYVFKNGVTVDSVTGSGESKLRKLV 252
            +  + L+V+DFTASWC PC+ +AP FE LA E    A  FAKVD+DN  E  +    +++P+F+ +KNG  +DS+TG+ E+KL +L+
Sbjct:   17 EHKDKLVVIDFTASWCGPCKHIAPAFEKLANEYPNVA--FAKVDVDNNSEVAESEGVSAMPSFFFYKNGDKIDSITGANEAKLEELI 101          
BLAST of mRNA_Ecto-sp13_S_contig11361.1196.1 vs. uniprot
Match: A0A6P5AJL9_BRABE (Thioredoxin n=3 Tax=Branchiostoma TaxID=7737 RepID=A0A6P5AJL9_BRABE)

HSP 1 Score: 83.2 bits (204), Expect = 1.420e-18
Identity = 42/85 (49.41%), Postives = 55/85 (64.71%), Query Frame = 1
Query:   10 EPLLVVDFTASWCKPCRAMAPIFEGLAKENKGAAAVFAKVDIDNLPETFDGTSI---PAFYVFKNGVTVDSVTGSGESKLRKLVA 255
            + L+VVDFTASWC PCR +AP+FE LA+EN     +F KVD+D   ET     I   P F  +KNG  V+ + G+ E KLR++VA
Sbjct:   20 DKLIVVDFTASWCGPCRMIAPVFEKLAEENPDV--IFVKVDVDANDETAGACGISAMPTFQCYKNGAKVEEMCGASEDKLREMVA 102          
BLAST of mRNA_Ecto-sp13_S_contig11361.1196.1 vs. uniprot
Match: A0A4Z2BNT1_9TELE (Thioredoxin n=1 Tax=Takifugu bimaculatus TaxID=433685 RepID=A0A4Z2BNT1_9TELE)

HSP 1 Score: 80.9 bits (198), Expect = 1.220e-17
Identity = 37/82 (45.12%), Postives = 56/82 (68.29%), Query Frame = 1
Query:   16 LLVVDFTASWCKPCRAMAPIFEGLAKENKGAAAVFAKVDIDNLPETFDG---TSIPAFYVFKNGVTVDSVTGSGESKLRKLV 252
            L+VVDFTA+WC PCR + PIF+ L+K+   A  VF KVD+D +PE  D    T++P F +FK+G  ++++ G+ E+KL   +
Sbjct:   22 LVVVDFTATWCGPCRRIGPIFDALSKKENNANVVFVKVDVDKVPELTDKYKVTAMPTFMLFKDG-NIETIVGANEAKLEAKI 102          
BLAST of mRNA_Ecto-sp13_S_contig11361.1196.1 vs. uniprot
Match: A0A5J9SKP4_9POAL (Thioredoxin n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9SKP4_9POAL)

HSP 1 Score: 81.3 bits (199), Expect = 1.270e-17
Identity = 41/87 (47.13%), Postives = 59/87 (67.82%), Query Frame = 1
Query:   16 LLVVDFTASWCKPCRAMAPIFEGLAKENKGAAAVFAKVDIDNLPET---FDGTSIPAFYVFKNGVTVDSVTGSGESKLRKLVADHVG 267
            L+++DFTASWC PCR +AP+F  LAK+  GA  VF KVD+D L E    ++  ++P F+  K+G TVD+V G+ + +L+  V  HVG
Sbjct:   30 LVIIDFTASWCGPCRFIAPVFAELAKKFVGA--VFLKVDVDELKEVAAEYNVEAMPTFHYIKDGKTVDTVVGARKDELQAKVEKHVG 114          
BLAST of mRNA_Ecto-sp13_S_contig11361.1196.1 vs. uniprot
Match: A0A8K0ED01_BRALA (TXN protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8K0ED01_BRALA)

HSP 1 Score: 80.5 bits (197), Expect = 1.630e-17
Identity = 40/87 (45.98%), Postives = 55/87 (63.22%), Query Frame = 1
Query:   10 EPLLVVDFTASWCKPCRAMAPIFEGLAKENKGAAAVFAKVDIDNLPETFDGTSI---PAFYVFKNGVTVDSVTGSGESKLRKLVADH 261
            + L+VVDFTASWC PC+ + P+FE LA+E+     +F KVD+D   ET     I   P F+ +KNG  V+ + G+ E KL+ LVA H
Sbjct:   20 DKLIVVDFTASWCGPCKMIGPVFEKLAEEHSDV--IFVKVDVDANDETAGACGISAMPTFHCYKNGQKVEEMCGASEDKLKALVAKH 104          
BLAST of mRNA_Ecto-sp13_S_contig11361.1196.1 vs. uniprot
Match: C3Z6B9_BRAFL (Thioredoxin n=2 Tax=Branchiostoma floridae TaxID=7739 RepID=C3Z6B9_BRAFL)

HSP 1 Score: 80.5 bits (197), Expect = 1.680e-17
Identity = 47/91 (51.65%), Postives = 60/91 (65.93%), Query Frame = 1
Query:    1 QRTEPLLVVDFTASWCKPCRAMAPIFEGLAKENKGAAAVFAKVDIDNLPETF---DGTSIPAFYVFKNGVTVDSVTGS-GESKLRKLVADH 261
            +  + L+VVDF A WC PCRAMAP+FE LA EN     +FAKV++    ET    D  SIPAF+ +KNG  VDSV GS  +S+L  LVA++
Sbjct:   17 ESNDKLVVVDFWAQWCAPCRAMAPVFEELANENPDV--IFAKVNVSVNMETAQAADIRSIPAFHFYKNGEKVDSVQGSVPKSELETLVANN 105          
BLAST of mRNA_Ecto-sp13_S_contig11361.1196.1 vs. uniprot
Match: C3YTF6_BRAFL (Thioredoxin n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3YTF6_BRAFL)

HSP 1 Score: 80.1 bits (196), Expect = 2.250e-17
Identity = 40/85 (47.06%), Postives = 56/85 (65.88%), Query Frame = 1
Query:   10 EPLLVVDFTASWCKPCRAMAPIFEGLAKENKGAAAVFAKVDIDNLPETFDGTSI---PAFYVFKNGVTVDSVTGSGESKLRKLVA 255
            + L+VVDFTASWC PC+ +AP+FE LA++N     +F KVD+D   ET     I   P F+ +KNG  VD +TG+ + KL ++VA
Sbjct:   19 DKLIVVDFTASWCGPCKMIAPVFEKLAEDNTDV--IFVKVDVDANDETAGACGISAMPTFHCYKNGDKVDEMTGASKDKLIEMVA 101          
BLAST of mRNA_Ecto-sp13_S_contig11361.1196.1 vs. uniprot
Match: A0A420JCJ6_9PEZI (Thioredoxin n=1 Tax=Golovinomyces cichoracearum TaxID=62708 RepID=A0A420JCJ6_9PEZI)

HSP 1 Score: 80.1 bits (196), Expect = 3.090e-17
Identity = 38/90 (42.22%), Postives = 52/90 (57.78%), Query Frame = 1
Query:    4 RTEPLLVVDFTASWCKPCRAMAPIFEGLAKENKGAAAVFAKVDIDNLPETFDGTSI---PAFYVFKNGVTVDSVTGSGESKLRKLVADHV 264
            ++  LL++DF+A WC PC+A+ P FE LA EN   + +FAK D+D   +      I   P F  F+NG  VDS+ GS  SKL   V  +V
Sbjct:   15 KSSSLLIIDFSAEWCGPCKAIGPFFERLASENASTSIIFAKCDVDQAEDVSKACQIRAMPTFKFFRNGKEVDSLVGSDPSKLESAVERYV 104          
BLAST of mRNA_Ecto-sp13_S_contig11361.1196.1 vs. uniprot
Match: A7RQN2_NEMVE (Thioredoxin n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7RQN2_NEMVE)

HSP 1 Score: 79.3 bits (194), Expect = 4.410e-17
Identity = 41/82 (50.00%), Postives = 53/82 (64.63%), Query Frame = 1
Query:   25 VDFTASWCKPCRAMAPIFEGLAKENKGAAAVFAKVDIDNLPETFDG---TSIPAFYVFKNGVTVDSVTGSGESKLRKLVADH 261
            +DFTA+WC PCR + P FE +AKE KG     AKVD+D   ET +    T++P F  +KNG  VD V G+ ESKL++L A H
Sbjct:   22 IDFTATWCGPCRMIGPKFEEMAKEFKGVKC--AKVDVDVNSETAESEGITAMPTFRFYKNGEMVDEVVGASESKLKELFAKH 101          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11361.1196.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G810_ECTSI1.170e-6596.26Thioredoxin domain-containing protein n=1 Tax=Ecto... [more]
UPI00106A16E73.620e-1945.98thioredoxin-like n=1 Tax=Dendronephthya gigantea T... [more]
A0A6P5AJL9_BRABE1.420e-1849.41Thioredoxin n=3 Tax=Branchiostoma TaxID=7737 RepID... [more]
A0A4Z2BNT1_9TELE1.220e-1745.12Thioredoxin n=1 Tax=Takifugu bimaculatus TaxID=433... [more]
A0A5J9SKP4_9POAL1.270e-1747.13Thioredoxin n=1 Tax=Eragrostis curvula TaxID=38414... [more]
A0A8K0ED01_BRALA1.630e-1745.98TXN protein n=1 Tax=Branchiostoma lanceolatum TaxI... [more]
C3Z6B9_BRAFL1.680e-1751.65Thioredoxin n=2 Tax=Branchiostoma floridae TaxID=7... [more]
C3YTF6_BRAFL2.250e-1747.06Thioredoxin n=1 Tax=Branchiostoma floridae TaxID=7... [more]
A0A420JCJ6_9PEZI3.090e-1742.22Thioredoxin n=1 Tax=Golovinomyces cichoracearum Ta... [more]
A7RQN2_NEMVE4.410e-1750.00Thioredoxin n=1 Tax=Nematostella vectensis TaxID=4... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11361contigEcto-sp13_S_contig11361:9..722 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score206.5
Seed ortholog evalue6.4e-51
Seed eggNOG ortholog2880.D7G810
Model size321
KEGG koko:K03671
KEGG Pathwayko04621,ko05418,map04621,map05418
Hectar predicted targeting categoryother localisation
GOsGO:0001932,GO:0001934,GO:0003674,GO:0003756,GO:0003824,GO:0004791,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006950,GO:0006979,GO:0007154,GO:0007165,GO:0007267,GO:0008150,GO:0008152,GO:0008283,GO:0009314,GO:0009628,GO:0009636,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010562,GO:0010604,GO:0010646,GO:0010647,GO:0010941,GO:0015035,GO:0015036,GO:0016209,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0016671,GO:0016853,GO:0016860,GO:0016864,GO:0019220,GO:0019222,GO:0019725,GO:0023051,GO:0023052,GO:0023056,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0032147,GO:0032148,GO:0032268,GO:0032270,GO:0032386,GO:0032879,GO:0032880,GO:0033135,GO:0033138,GO:0033157,GO:0033158,GO:0033554,GO:0033674,GO:0034599,GO:0042221,GO:0042306,GO:0042325,GO:0042327,GO:0042592,GO:0043085,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043388,GO:0043549,GO:0044093,GO:0044424,GO:0044444,GO:0044464,GO:0045454,GO:0045859,GO:0045860,GO:0045937,GO:0046822,GO:0047134,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051049,GO:0051098,GO:0051099,GO:0051101,GO:0051171,GO:0051173,GO:0051174,GO:0051223,GO:0051246,GO:0051247,GO:0051338,GO:0051347,GO:0051716,GO:0051896,GO:0051897,GO:0055114,GO:0060255,GO:0060341,GO:0060548,GO:0065007,GO:0065008,GO:0065009,GO:0070201,GO:0070887,GO:0080090,GO:0080134,GO:0080135,GO:0090087,GO:0097237,GO:0098754,GO:0098869,GO:0140096,GO:1900180,GO:1900407,GO:1900408,GO:1901031,GO:1901032,GO:1902531,GO:1902533,GO:1902882,GO:1902883,GO:1903201,GO:1903202,GO:1903205,GO:1903206,GO:1903827,GO:1904589,GO:1990748,GO:2001023,GO:2001024,GO:2001038,GO:2001039
Exons2
EggNOG free text desc.cell redox homeostasis
EggNOG OGsCOG0526@1,KOG0907@2759
Cds size321
COG Functional cat.CO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462594.520124-CDS-Ecto-sp13_S_contig11361:8..1911681462594.520124-CDS-Ecto-sp13_S_contig11361:8..191Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11361 9..191 +
1681462594.52991-CDS-Ecto-sp13_S_contig11361:584..7221681462594.52991-CDS-Ecto-sp13_S_contig11361:584..722Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11361 585..722 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11361.1196.1prot_Ecto-sp13_S_contig11361.1196.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11361 9..722 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11361.1196.1

>prot_Ecto-sp13_S_contig11361.1196.1 ID=prot_Ecto-sp13_S_contig11361.1196.1|Name=mRNA_Ecto-sp13_S_contig11361.1196.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=107bp
QRTEPLLVVDFTASWCKPCRAMAPIFEGLAKENKGAAAVFAKVDIDNLPE
TFDGTSIPAFYVFKNGVTVDSVTGSGESKLRKLVADHVGQQQGDGSGASP
PDKKVQ*
back to top

mRNA from alignment at Ecto-sp13_S_contig11361:9..722+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11361.1196.1 ID=mRNA_Ecto-sp13_S_contig11361.1196.1|Name=mRNA_Ecto-sp13_S_contig11361.1196.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=714bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11361:9..722+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAAAGGACGGAGCCTCTCTTGGTGGTCGACTTCACGGCGTCGTGGTGTAA GCCGTGCCGAGCGATGGCCCCCATTTTCGAGGGCTTGGCGAAGGAGAACA AAGGCGCCGCTGCGGTGTTCGCGAAGGTGGATATCGACAACCTCCCGGAA ACCTTCGACGGAACGAGCATCCCTGCCTTTTATGTGAGTCTGCCAGTCCC GCCGCGTGAAGTGTGACCACAGCAGTAGGTACGCGGTTTGATGAATGCCC CCGGCGGCCTGCTGCGATGGGCGGTCTGGATCCGTTCTATCTGTGAAGAT AAGGTACGCTCTCGTATGCGTGGTCTCTTTTGTGGGGCAAGAGACCAATC CTGTCAGTGACGGTGAAACGGTGGCTGATGCTCGCCTGCGTTGTTTGGGA GAGGCCAAAATGGCCGCTACGCCAAAGTCGAAGGACGCTGCTCTTGGCAG TTACAGTTTTTGCGGTACAGCTAAACAAACCAACAACTGCTGTGAGGTGC TAACAGAGAAAGTACCTTCCACTGCTCTCCCTGCATGCTTGTCGCGCAAC GTCTTGTCTTGTTCCGATGCTACCAGGTGTTCAAGAATGGTGTTACGGTG GACAGTGTCACAGGGTCTGGGGAGAGCAAGCTTCGAAAATTGGTGGCGGA CCACGTGGGACAACAACAAGGCGACGGCAGCGGCGCGTCTCCACCAGACA AGAAGGTCCAATAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11361:9..722+

>mRNA_Ecto-sp13_S_contig11361.1196.1 ID=mRNA_Ecto-sp13_S_contig11361.1196.1|Name=mRNA_Ecto-sp13_S_contig11361.1196.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=321bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11361:9..722+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAAAGGACGGAGCCTCTCTTGGTGGTCGACTTCACGGCGTCGTGGTGTAA
GCCGTGCCGAGCGATGGCCCCCATTTTCGAGGGCTTGGCGAAGGAGAACA
AAGGCGCCGCTGCGGTGTTCGCGAAGGTGGATATCGACAACCTCCCGGAA
ACCTTCGACGGAACGAGCATCCCTGCCTTTTATGTGTTCAAGAATGGTGT
TACGGTGGACAGTGTCACAGGGTCTGGGGAGAGCAAGCTTCGAAAATTGG
TGGCGGACCACGTGGGACAACAACAAGGCGACGGCAGCGGCGCGTCTCCA
CCAGACAAGAAGGTCCAATAG
back to top