mRNA_Ecto-sp13_S_contig11361.1196.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig11361.1196.1 vs. uniprot
Match: D7G810_ECTSI (Thioredoxin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G810_ECTSI) HSP 1 Score: 204 bits (519), Expect = 1.170e-65 Identity = 103/107 (96.26%), Postives = 104/107 (97.20%), Query Frame = 1
Query: 1 QRTEPLLVVDFTASWCKPCRAMAPIFEGLAKENKGAAAVFAKVDIDNLPETFDGTSIPAFYVFKNGVTVDSVTGSGESKLRKLVADHVGQQQGDGSGASPPD-KKVQ 318
+RTEPLLVVDFTASWCKPCRAMAPIFEGLAKENKGAAAVFAKVDIDNLPETFDGTSIPAFYVFKNGV VDSVTGSGESKLRKLVADHVGQQQ DGSGASPPD KKVQ
Sbjct: 61 KRTEPLLVVDFTASWCKPCRAMAPIFEGLAKENKGAAAVFAKVDIDNLPETFDGTSIPAFYVFKNGVKVDSVTGSGESKLRKLVADHVGQQQEDGSGASPPDDKKVQ 167
BLAST of mRNA_Ecto-sp13_S_contig11361.1196.1 vs. uniprot
Match: UPI00106A16E7 (thioredoxin-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106A16E7) HSP 1 Score: 84.7 bits (208), Expect = 3.620e-19 Identity = 40/87 (45.98%), Postives = 60/87 (68.97%), Query Frame = 1
Query: 1 QRTEPLLVVDFTASWCKPCRAMAPIFEGLAKENKGAAAVFAKVDIDNLPETFDG---TSIPAFYVFKNGVTVDSVTGSGESKLRKLV 252
+ + L+V+DFTASWC PC+ +AP FE LA E A FAKVD+DN E + +++P+F+ +KNG +DS+TG+ E+KL +L+
Sbjct: 17 EHKDKLVVIDFTASWCGPCKHIAPAFEKLANEYPNVA--FAKVDVDNNSEVAESEGVSAMPSFFFYKNGDKIDSITGANEAKLEELI 101
BLAST of mRNA_Ecto-sp13_S_contig11361.1196.1 vs. uniprot
Match: A0A6P5AJL9_BRABE (Thioredoxin n=3 Tax=Branchiostoma TaxID=7737 RepID=A0A6P5AJL9_BRABE) HSP 1 Score: 83.2 bits (204), Expect = 1.420e-18 Identity = 42/85 (49.41%), Postives = 55/85 (64.71%), Query Frame = 1
Query: 10 EPLLVVDFTASWCKPCRAMAPIFEGLAKENKGAAAVFAKVDIDNLPETFDGTSI---PAFYVFKNGVTVDSVTGSGESKLRKLVA 255
+ L+VVDFTASWC PCR +AP+FE LA+EN +F KVD+D ET I P F +KNG V+ + G+ E KLR++VA
Sbjct: 20 DKLIVVDFTASWCGPCRMIAPVFEKLAEENPDV--IFVKVDVDANDETAGACGISAMPTFQCYKNGAKVEEMCGASEDKLREMVA 102
BLAST of mRNA_Ecto-sp13_S_contig11361.1196.1 vs. uniprot
Match: A0A4Z2BNT1_9TELE (Thioredoxin n=1 Tax=Takifugu bimaculatus TaxID=433685 RepID=A0A4Z2BNT1_9TELE) HSP 1 Score: 80.9 bits (198), Expect = 1.220e-17 Identity = 37/82 (45.12%), Postives = 56/82 (68.29%), Query Frame = 1
Query: 16 LLVVDFTASWCKPCRAMAPIFEGLAKENKGAAAVFAKVDIDNLPETFDG---TSIPAFYVFKNGVTVDSVTGSGESKLRKLV 252
L+VVDFTA+WC PCR + PIF+ L+K+ A VF KVD+D +PE D T++P F +FK+G ++++ G+ E+KL +
Sbjct: 22 LVVVDFTATWCGPCRRIGPIFDALSKKENNANVVFVKVDVDKVPELTDKYKVTAMPTFMLFKDG-NIETIVGANEAKLEAKI 102
BLAST of mRNA_Ecto-sp13_S_contig11361.1196.1 vs. uniprot
Match: A0A5J9SKP4_9POAL (Thioredoxin n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9SKP4_9POAL) HSP 1 Score: 81.3 bits (199), Expect = 1.270e-17 Identity = 41/87 (47.13%), Postives = 59/87 (67.82%), Query Frame = 1
Query: 16 LLVVDFTASWCKPCRAMAPIFEGLAKENKGAAAVFAKVDIDNLPET---FDGTSIPAFYVFKNGVTVDSVTGSGESKLRKLVADHVG 267
L+++DFTASWC PCR +AP+F LAK+ GA VF KVD+D L E ++ ++P F+ K+G TVD+V G+ + +L+ V HVG
Sbjct: 30 LVIIDFTASWCGPCRFIAPVFAELAKKFVGA--VFLKVDVDELKEVAAEYNVEAMPTFHYIKDGKTVDTVVGARKDELQAKVEKHVG 114
BLAST of mRNA_Ecto-sp13_S_contig11361.1196.1 vs. uniprot
Match: A0A8K0ED01_BRALA (TXN protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8K0ED01_BRALA) HSP 1 Score: 80.5 bits (197), Expect = 1.630e-17 Identity = 40/87 (45.98%), Postives = 55/87 (63.22%), Query Frame = 1
Query: 10 EPLLVVDFTASWCKPCRAMAPIFEGLAKENKGAAAVFAKVDIDNLPETFDGTSI---PAFYVFKNGVTVDSVTGSGESKLRKLVADH 261
+ L+VVDFTASWC PC+ + P+FE LA+E+ +F KVD+D ET I P F+ +KNG V+ + G+ E KL+ LVA H
Sbjct: 20 DKLIVVDFTASWCGPCKMIGPVFEKLAEEHSDV--IFVKVDVDANDETAGACGISAMPTFHCYKNGQKVEEMCGASEDKLKALVAKH 104
BLAST of mRNA_Ecto-sp13_S_contig11361.1196.1 vs. uniprot
Match: C3Z6B9_BRAFL (Thioredoxin n=2 Tax=Branchiostoma floridae TaxID=7739 RepID=C3Z6B9_BRAFL) HSP 1 Score: 80.5 bits (197), Expect = 1.680e-17 Identity = 47/91 (51.65%), Postives = 60/91 (65.93%), Query Frame = 1
Query: 1 QRTEPLLVVDFTASWCKPCRAMAPIFEGLAKENKGAAAVFAKVDIDNLPETF---DGTSIPAFYVFKNGVTVDSVTGS-GESKLRKLVADH 261
+ + L+VVDF A WC PCRAMAP+FE LA EN +FAKV++ ET D SIPAF+ +KNG VDSV GS +S+L LVA++
Sbjct: 17 ESNDKLVVVDFWAQWCAPCRAMAPVFEELANENPDV--IFAKVNVSVNMETAQAADIRSIPAFHFYKNGEKVDSVQGSVPKSELETLVANN 105
BLAST of mRNA_Ecto-sp13_S_contig11361.1196.1 vs. uniprot
Match: C3YTF6_BRAFL (Thioredoxin n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3YTF6_BRAFL) HSP 1 Score: 80.1 bits (196), Expect = 2.250e-17 Identity = 40/85 (47.06%), Postives = 56/85 (65.88%), Query Frame = 1
Query: 10 EPLLVVDFTASWCKPCRAMAPIFEGLAKENKGAAAVFAKVDIDNLPETFDGTSI---PAFYVFKNGVTVDSVTGSGESKLRKLVA 255
+ L+VVDFTASWC PC+ +AP+FE LA++N +F KVD+D ET I P F+ +KNG VD +TG+ + KL ++VA
Sbjct: 19 DKLIVVDFTASWCGPCKMIAPVFEKLAEDNTDV--IFVKVDVDANDETAGACGISAMPTFHCYKNGDKVDEMTGASKDKLIEMVA 101
BLAST of mRNA_Ecto-sp13_S_contig11361.1196.1 vs. uniprot
Match: A0A420JCJ6_9PEZI (Thioredoxin n=1 Tax=Golovinomyces cichoracearum TaxID=62708 RepID=A0A420JCJ6_9PEZI) HSP 1 Score: 80.1 bits (196), Expect = 3.090e-17 Identity = 38/90 (42.22%), Postives = 52/90 (57.78%), Query Frame = 1
Query: 4 RTEPLLVVDFTASWCKPCRAMAPIFEGLAKENKGAAAVFAKVDIDNLPETFDGTSI---PAFYVFKNGVTVDSVTGSGESKLRKLVADHV 264
++ LL++DF+A WC PC+A+ P FE LA EN + +FAK D+D + I P F F+NG VDS+ GS SKL V +V
Sbjct: 15 KSSSLLIIDFSAEWCGPCKAIGPFFERLASENASTSIIFAKCDVDQAEDVSKACQIRAMPTFKFFRNGKEVDSLVGSDPSKLESAVERYV 104
BLAST of mRNA_Ecto-sp13_S_contig11361.1196.1 vs. uniprot
Match: A7RQN2_NEMVE (Thioredoxin n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7RQN2_NEMVE) HSP 1 Score: 79.3 bits (194), Expect = 4.410e-17 Identity = 41/82 (50.00%), Postives = 53/82 (64.63%), Query Frame = 1
Query: 25 VDFTASWCKPCRAMAPIFEGLAKENKGAAAVFAKVDIDNLPETFDG---TSIPAFYVFKNGVTVDSVTGSGESKLRKLVADH 261
+DFTA+WC PCR + P FE +AKE KG AKVD+D ET + T++P F +KNG VD V G+ ESKL++L A H
Sbjct: 22 IDFTATWCGPCRMIGPKFEEMAKEFKGVKC--AKVDVDVNSETAESEGITAMPTFRFYKNGEMVDEVVGASESKLKELFAKH 101 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11361.1196.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig11361.1196.1 >prot_Ecto-sp13_S_contig11361.1196.1 ID=prot_Ecto-sp13_S_contig11361.1196.1|Name=mRNA_Ecto-sp13_S_contig11361.1196.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=107bp QRTEPLLVVDFTASWCKPCRAMAPIFEGLAKENKGAAAVFAKVDIDNLPEback to top mRNA from alignment at Ecto-sp13_S_contig11361:9..722+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig11361.1196.1 ID=mRNA_Ecto-sp13_S_contig11361.1196.1|Name=mRNA_Ecto-sp13_S_contig11361.1196.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=714bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11361:9..722+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11361:9..722+ >mRNA_Ecto-sp13_S_contig11361.1196.1 ID=mRNA_Ecto-sp13_S_contig11361.1196.1|Name=mRNA_Ecto-sp13_S_contig11361.1196.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=321bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11361:9..722+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |