mRNA_Ecto-sp13_S_contig11312.1166.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11312.1166.1
Unique NamemRNA_Ecto-sp13_S_contig11312.1166.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11312.1166.1 vs. uniprot
Match: D7FUH8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUH8_ECTSI)

HSP 1 Score: 186 bits (472), Expect = 4.850e-57
Identity = 113/187 (60.43%), Postives = 114/187 (60.96%), Query Frame = 1 
Query:   10 QTFVDQGYTEDEVREALVSQNEACPTFSLTECQRQVFRGSISSLSVCDNTTEGVDCSTVGSLEPVRCMEESEYPTDLWQNTDFAGWDYTQRTCCGSNFTSTSMEPSCSISDGEDDSGGGGSTEGANIGVGLAGGVAVAVGLILTALYFVHRKKKRNRSPKRDRDTTVAEAVGPPENAPRILDAEVRQ 570
            QTFVDQGYTEDEVREAL SQNEACPTFSLTECQRQ  R       + D    G          PV                    WDYTQRTCCGSNFTSTS EPSC               EGANI            GLILTALYFVHRKKKRNRSPKRDRDTTVAEAVGPPENAPRILDAEVRQ
Sbjct:    6 QTFVDQGYTEDEVREALESQNEACPTFSLTECQRQCVRQHHRGRGLLDGRQPGA--------RPVH--------------GGIGMWDYTQRTCCGSNFTSTSTEPSCXXXXXXXXXXXXXXMEGANIXXXXXXXXXXXXGLILTALYFVHRKKKRNRSPKRDRDTTVAEAVGPPENAPRILDAEVRQ 170
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11312.1166.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FUH8_ECTSI4.850e-5760.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11312contigEcto-sp13_S_contig11312:774..4967 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size573
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionVon Willebrand factor type A domain protein
Ec32 orthologEc-21_003770.1
Cds size573
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11312.1166.1prot_Ecto-sp13_S_contig11312.1166.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11312 774..4967 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462591.8593805-CDS-Ecto-sp13_S_contig11312:773..8491681462591.8593805-CDS-Ecto-sp13_S_contig11312:773..849Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11312 774..849 -
1681462591.868042-CDS-Ecto-sp13_S_contig11312:1664..17801681462591.868042-CDS-Ecto-sp13_S_contig11312:1664..1780Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11312 1665..1780 -
1681462591.8761683-CDS-Ecto-sp13_S_contig11312:2746..28641681462591.8761683-CDS-Ecto-sp13_S_contig11312:2746..2864Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11312 2747..2864 -
1681462591.8849676-CDS-Ecto-sp13_S_contig11312:3603..36401681462591.8849676-CDS-Ecto-sp13_S_contig11312:3603..3640Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11312 3604..3640 -
1681462591.8942354-CDS-Ecto-sp13_S_contig11312:4266..43781681462591.8942354-CDS-Ecto-sp13_S_contig11312:4266..4378Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11312 4267..4378 -
1681462591.9046974-CDS-Ecto-sp13_S_contig11312:4853..49671681462591.9046974-CDS-Ecto-sp13_S_contig11312:4853..4967Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11312 4854..4967 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11312.1166.1

>prot_Ecto-sp13_S_contig11312.1166.1 ID=prot_Ecto-sp13_S_contig11312.1166.1|Name=mRNA_Ecto-sp13_S_contig11312.1166.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=191bp
MRQQTFVDQGYTEDEVREALVSQNEACPTFSLTECQRQVFRGSISSLSVC
DNTTEGVDCSTVGSLEPVRCMEESEYPTDLWQNTDFAGWDYTQRTCCGSN
FTSTSMEPSCSISDGEDDSGGGGSTEGANIGVGLAGGVAVAVGLILTALY
FVHRKKKRNRSPKRDRDTTVAEAVGPPENAPRILDAEVRQ*
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mRNA from alignment at Ecto-sp13_S_contig11312:774..4967-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11312.1166.1 ID=mRNA_Ecto-sp13_S_contig11312.1166.1|Name=mRNA_Ecto-sp13_S_contig11312.1166.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4194bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11312:774..4967- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGACAACAGACGTTCGTGGACCAAGGCTACACCGAGGACGAGGTTAG
GGAGGCCCTCGTGTCCCAGAACGAAGCCTGTCCGACCTTCAGTCTCACCG
AGTGCCAGCGACAGGTGACCTCTTGCCCGCCGATAAGCTCGTCGGACACC
TACATGTTTGCATCAGTTTGGGTGGATGTGTGGTTGCGTTCGCAGACAGT
CACCGCGTGACTAGCTGTAGCTCGGAATCGTATGCGTCTTGCATGAGGTA
TTGTGAGCGCAGGCGGTAGCATGGCATACATGGACAGGTTTGCAGCTGGC
GTGGTCATCGTCGCCGTCGTTGCTGTTGTCATTGCGGTCATCATGGTCGT
TTTCGTTTTCTTGTCCTTGTTTGTTGGTGTTGTTTGTTGTTGTCGCTATT
CTTCTGCGAAAAGAACATTGCGGGCTGAGCCATTGCGAGCGCAACCCTTG
CAGGTTGTGTCACATTTTGCTCGGAGCCTTGGTGCTCCTTTTTCCGCCTC
TCTCGGGGGGGGGACCAATTACCCCCCTCTTCCGGCCCCACGAAAAGCAG
AGGGACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTAGGTTTTCCGTGG
TTCCATCTCCTCCCTGAGCGTGTGCGACAACACCACCGAAGGCGTGGACT
GCTCGACGGTCGGCAGCCTGGAGCCCGTCCGGTGCATGGAGGAATCGGAA
TGTGAGAGGAGTAGGGGTGTACTCGTGCAAGCGCATGCCTTAGCTTTTTA
GACCCGTGACCTCGCATCCCTACCGTGCCGGGACGGAACGATGCGTTGGG
TTTTCGCCGGCGCGGGCGACGTTGTCGCCAGGAAGAACCAGGAGCTGCTC
ATTATCATCCTCGCGTTGGCTGTGCCATACCCAACGTGCCATGGGTTGGT
TGGGCGTTCCGGCTAGTCAACCGTCGGGGGGGCAGGTTGCGTCCTCTGAG
GTCAGCTGGGCTCATCGAGCCTGGGCCGGGTTGTTTGTGGTGTGCACTGC
TTTTGGGTTTGGGCTGGCGATGCTTTTCTATGCTATGCTACGCTATGCTA
TGCTATGCTATGCTATGCTATGCTATGTTTTGCTGTGGCGCAGCAAGGTG
GTGCTGTGCTAGGAGGGAAGTTCCCTCCCCTTCCCTCCCTTCTTCACCCC
CCCCCTCTCTGTGCGTGTGTGCGTGTGTTTCATCTCTCTCTCTCTCTCTC
TCGACATGTCGACATCTCGACATGTCGACATCTCGACATCTCTTGCGTCG
GCTGCGGGCGCCGATGCGGATGCGGCCGCAAATTTATTGATGCTGCTGGT
CGTCGGCGTCATTCTTTCCATCGGCAGACCCAACCGACCTGTGGCAAAAC
ACGGACTTTGCTGGGTGCGTTGTATGATACACCTTGTTGGTCACTGTCGA
CATGTTTTTGCATTCTTGTATGCAAACCACTAGACGAGTTAGTGAACCGT
CGTTGTAGATTCCAATGGGGTGGCAGGGCGTTGTGTTTTTTGCTCATCTA
GGTTGTTGGTCAGCCAGAGCTGCTGCGGGCAGCAGGCATGGCCAAGGTCT
CGAGGTTTCACCAGTCCTCTCTCTTGTATGTGTGACTCCTGCTTGACCAT
GTGCGCAAGATGCTTTCCCTAACAAGCGGTTAGTATCAGATACCGCAGTC
TGCCCGCGGGTAAAGAACCCGCTACGCTACTCGCACATGACGGTTTTCTG
GTCATGTCGTGTCGTGTCTAGTGACCCTTTTGTCGTGTGAACCAGGTCTG
AATGGAATGTCCTACACCCCGTGGCTGAACTTTTGGCGGGTGCATTTGAG
ATTTTGTTTTGTTGAACATTAAAGTGAGTCCAGTTATTCGCCGAACACCC
CAAAACTTCATTGTGCCTGCAGAAAAAGTGAGCGCCAAGCGAGGGTGTAC
CTGGCGCTGACCCTCACTTTTCATCGTTGCGGACACAACAGTTTCAGCGA
CGAAGTGCTCCAGAACATGGCATAACTAGTCAGCCTTGATCCATTGGCTG
CCGCGGTCCGCTCGCTGGCGCTGTATGCTCTCGTGTTTGCTTCTGTTCTT
ATTATTGGCATCGACCGCGCTTCTGTGTGTGTGTGTCTTTTGCGAATCGT
CAGGTGGGATTACACCCAGAGGACATGCTGCGGGTCGAACTTCACGAGCA
CCTCCATGGAGCCGTCGTGCTCCATCTCCGACGGAGAAGACGACAGCGGG
GGCGGCGGCAGCACAGAAGGGGTGAGATGGAGAGAGGGATGGCGCTGCTT
GCTGCTGCTGCCGCTGTCGGTCGATGTCGCGCTATCAAGGGGTAGATACA
AGCTTTCAGATACGGTGCATCGTTGAAGTACGCGAAGTGCGACGAAACCG
AGCCGGACCGAGACGTTTGTAGTGAGTGGAGGTGAACCCAACATAGTGCG
ATGCTAGCAAAGATAACCGATGAGACATTCATGACGGGAGGGCAAGTCGA
GGGCGTCAACTATGGGATGAGGTGGTGATGAGGTCGATGAGCTACACTGC
CGTGGGGGCTCCGTAGATGCCAAGTAGTAAATTCGCCGGAAGAACGGAGA
CCGTCGTGTATGGGTCGAGGCCTGAATACCTCGCGATTTATTATTTAACT
TGCGTGACGTACAGAAGCCGAAATCCTTCGAAGTATTTTTTTCCCGGAGA
CCCTAGATACTCCCGGCCAGAGTTTGAGTGACAGAAGGACTCGTGGACCC
TGGACCATTCTGTAGGATATAGGTGGCGAGTGATCAGAAGCGAAATATAG
ATTGGACGGATAGTAGCACTGGCAAGGGGAGTCACCCTCCTCGGTAGTGC
ATGTGACGGGGCTCACGAACCCCGCGACTAACTTCTATAGAAGCCAAAAT
CAAACCATTAGACTAGTCAGCGCTGACTAGTTGAATGGTTTGATTTCGGC
TTCTATCGACGCGACGGTGGGTCGCGTCTCACCAGACCGGGCGGGCGGTC
GGGAGGGCGGGCGGGCATCCCAGTCCCTCCTTCGACAATACCAACCATGT
CGAGAAATGTAGTAGGCCGAAGACCACACACACACGGAACACTGCTGTTC
CATTTTTGTCGTCAACCATCGATGCATAGCTGTTTTCTTAACGGCCAAAA
AGAAACAGTAAATGGCGCTTTTAAAACAAAAATTGGACCATTTTTATAAT
ATTTTCAACGTTGCTGGTCCGACATTGTGCCCGGCAGGCGAATATCGGAG
TCGGGTTGGCTGGAGGCGTCGCCGTGGCGGTAGGGCTTATCCTGACTGCG
CTCTACTTCGTCCACAGGAAGAAGAAGAGGAACCGCTCTCCCAAGAGGGA
CCGGTAAGTTTTTGTCGTCGTTGTAGCTGTTATAGCCGCTGCTGCTTAGA
AAGTTTTTTTTTGCATCATCCGTGATGAAAATCAGGGCTGCGATGACGGT
GTGCGGGTTTTGCACCAAGTATTCTAAAATTGGCGTGGACTTGTTACGCT
GTCTGAAGCCAGTGGGGACGCGATGGGTATGGACGTCGTCCACACGTGTG
CTTGTAGTCGCCCCCTTATTTTACTTTGTGCTCCCTCCTCCTCGCAGCAT
GATTGGTGCGTTCACACGCATACCATGATCACCCCCCCCCCACGGCCCTG
GTGACGTCACAAAAATACGTTATTTTCTCATGTTTCGTGGTTCGTCGACA
GAAAAAGGTACATGTGTACCCGACGAGACACGAACGATTACCTCGAGGCT
TTCGTTGTACATGGTATTCGGCGCTTGCCTGGTGGGTCAAGAACCCAGAG
TTTTTCGCACTCTCTTTTGTGCGGATGCAAAGCGTCGATGGCGTTGTCTC
CTCCAAGCTCCCCCCCCCCCCCTGGCGCTTCGTACTCGGTGATGTGCTAG
CTTGGTCCGGTGAAATTCCGGCGTGCTCCATCCCGGCCTTGTAGAGATGC
GGGGTCAGTGGTCTTACCACTACGGCATGCCCCGCCACCATGAGTTTGCC
CTGTTGTTGACCTGTCTCCACCCTGGTGCCCGTGTTTTTTCTTCGTATCG
TCACACGCTTGCTGCTGCTTGTGGCAATAATGCGCTTCTGCTGCGGTTTC
GACCCGCTGCGATTCGACCGCGGAATCGGACTGAATGGGGTGCGATGGGA
TTGAATGGGATTTGGCAGGGATACCACGGTAGCAGAGGCCGTGGGACCTC
CGGAGAACGCACCAAGAATTTTGGACGCGGAGGTTAGACAGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11312:774..4967-

>mRNA_Ecto-sp13_S_contig11312.1166.1 ID=mRNA_Ecto-sp13_S_contig11312.1166.1|Name=mRNA_Ecto-sp13_S_contig11312.1166.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=573bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11312:774..4967- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGACAACAGACGTTCGTGGACCAAGGCTACACCGAGGACGAGGTTAG
GGAGGCCCTCGTGTCCCAGAACGAAGCCTGTCCGACCTTCAGTCTCACCG
AGTGCCAGCGACAGGTTTTCCGTGGTTCCATCTCCTCCCTGAGCGTGTGC
GACAACACCACCGAAGGCGTGGACTGCTCGACGGTCGGCAGCCTGGAGCC
CGTCCGGTGCATGGAGGAATCGGAATACCCAACCGACCTGTGGCAAAACA
CGGACTTTGCTGGGTGGGATTACACCCAGAGGACATGCTGCGGGTCGAAC
TTCACGAGCACCTCCATGGAGCCGTCGTGCTCCATCTCCGACGGAGAAGA
CGACAGCGGGGGCGGCGGCAGCACAGAAGGGGCGAATATCGGAGTCGGGT
TGGCTGGAGGCGTCGCCGTGGCGGTAGGGCTTATCCTGACTGCGCTCTAC
TTCGTCCACAGGAAGAAGAAGAGGAACCGCTCTCCCAAGAGGGACCGGGA
TACCACGGTAGCAGAGGCCGTGGGACCTCCGGAGAACGCACCAAGAATTT
TGGACGCGGAGGTTAGACAGTAA
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