mRNA_Ecto-sp13_S_contig1131.1163.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1131.1163.1
Unique NamemRNA_Ecto-sp13_S_contig1131.1163.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1131.1163.1 vs. uniprot
Match: A0A6H5KL95_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL95_9PHAE)

HSP 1 Score: 264 bits (674), Expect = 4.940e-75
Identity = 151/174 (86.78%), Postives = 157/174 (90.23%), Query Frame = 2 
Query:  380 RRGNKDHLSG----PSIIVARLLASSAHELRRRASQLKALLSAIEKKAGADATAAAVESGGPPLALKDRFNLLLQDAAQALRSGLVAPPLTGPEAEKGTVESELAPTKSKELAAAAEAPGSSSDQQEVIALTVDNVEAVAGVFNTDIGVDVENEQLCRFLRAATTTTTKISASP 889
            + G K  LSG    PSI+VAR+L+SSA  LRRRASQLKALLSAIEKK  ADATAAAVESGGPPLALKDRFNLLLQDAAQALRSGLVAPPLTGPEAEKGTVES LAPTKSKE AAAAEAPGSSSDQ+ V+ALTVDNV AV GVFNTDIGVDVENEQLCRFLRAATTTTTKISASP
Sbjct: 3413 KTGQKGPLSGSEFGPSILVARVLSSSADGLRRRASQLKALLSAIEKKRSADATAAAVESGGPPLALKDRFNLLLQDAAQALRSGLVAPPLTGPEAEKGTVESGLAPTKSKEPAAAAEAPGSSSDQEAVMALTVDNVGAVEGVFNTDIGVDVENEQLCRFLRAATTTTTKISASP 3586
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BLAST of mRNA_Ecto-sp13_S_contig1131.1163.1 vs. uniprot
Match: D7FND1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FND1_ECTSI)

HSP 1 Score: 187 bits (474), Expect = 2.520e-52
Identity = 113/151 (74.83%), Postives = 118/151 (78.15%), Query Frame = 2 
Query:  437 ASSAHELRRRASQLKALLSAIEKKAGADATAAAVESGGPPLALKDRFNLLLQDAAQALRSGLVAPPLTGPEAEKGTVESELAPTKSKELAAAAEAPGSSSDQQEVIALTVDNVEAVAGVFNTDIGVDVENEQLCRFLRAATTTTTKISASP 889
            ASS H      S  +ALLSAIEKK  A A AAA E GGP LALKDRFNLLL DAAQALRSGLVAPPLTGPE EK TVES       KE  AAA APGSS D+ EV+ LTV+NVEAV GVFNTDIGVDVENEQLCRFLR+ATTTTTKISASP
Sbjct:  205 ASSLHP----PSAPEALLSAIEKKTSAKAIAAAAEPGGPLLALKDRFNLLLHDAAQALRSGLVAPPLTGPEVEKETVES-------KEPPAAAAAPGSSPDKNEVMTLTVENVEAVEGVFNTDIGVDVENEQLCRFLRSATTTTTKISASP 344
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1131.1163.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KL95_9PHAE4.940e-7586.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FND1_ECTSI2.520e-5274.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1131contigEcto-sp13_S_contig1131:5140..7998 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1180
Hectar predicted targeting categoryother localisation
Exons5
Cds size615
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1131.1163.1prot_Ecto-sp13_S_contig1131.1163.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1131 6537..7710 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462591.4959166-UTR-Ecto-sp13_S_contig1131:5139..51931681462591.4959166-UTR-Ecto-sp13_S_contig1131:5139..5193Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1131 5140..5193 +
1681462591.5067825-UTR-Ecto-sp13_S_contig1131:6016..61061681462591.5067825-UTR-Ecto-sp13_S_contig1131:6016..6106Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1131 6017..6106 +
1681462591.5149488-UTR-Ecto-sp13_S_contig1131:6403..65361681462591.5149488-UTR-Ecto-sp13_S_contig1131:6403..6536Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1131 6404..6536 +
1681462591.5579238-UTR-Ecto-sp13_S_contig1131:7710..79981681462591.5579238-UTR-Ecto-sp13_S_contig1131:7710..7998Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1131 7711..7998 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462591.5254304-CDS-Ecto-sp13_S_contig1131:6536..66621681462591.5254304-CDS-Ecto-sp13_S_contig1131:6536..6662Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1131 6537..6662 +
1681462591.5380318-CDS-Ecto-sp13_S_contig1131:6673..67511681462591.5380318-CDS-Ecto-sp13_S_contig1131:6673..6751Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1131 6674..6751 +
1681462591.5479395-CDS-Ecto-sp13_S_contig1131:7299..77101681462591.5479395-CDS-Ecto-sp13_S_contig1131:7299..7710Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1131 7300..7710 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1131.1163.1

>prot_Ecto-sp13_S_contig1131.1163.1 ID=prot_Ecto-sp13_S_contig1131.1163.1|Name=mRNA_Ecto-sp13_S_contig1131.1163.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=205bp
MVPTTTEIKRLRGCTQPGLRSSFWAPVSLMLQTRRRGNKDHLSGPSIIVA
RLLASSAHELRRRASQLKALLSAIEKKAGADATAAAVESGGPPLALKDRF
NLLLQDAAQALRSGLVAPPLTGPEAEKGTVESELAPTKSKELAAAAEAPG
SSSDQQEVIALTVDNVEAVAGVFNTDIGVDVENEQLCRFLRAATTTTTKI
SASP*
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mRNA from alignment at Ecto-sp13_S_contig1131:5140..7998+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1131.1163.1 ID=mRNA_Ecto-sp13_S_contig1131.1163.1|Name=mRNA_Ecto-sp13_S_contig1131.1163.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2859bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1131:5140..7998+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAAAGCCTGGCGGCTGCTCCGGTCGATCTGCTTCCAGCCTCTGTGGTCTG
CCAGGTACGCTTTCCGTGGGAGGGTTCCAAAACCTTCTGTTTTGCCATTG
GAACGAGGGTCTCTGCATCCTCTGCATCTTTTCGGTAGGTCAACAAGATG
ATGCGTTGGTGTTCTCTTACATGCTTTCCTGTTTAGGCATCTCACCTAGA
CTAGTGTAAAACGACTCCGATCCTACACAGAAGAGTGTGAACCGCCAATA
GGCTGGTAAATGTCCCTTCGATCGCATTAAGCTGAACATGGGCCGTCGGG
CTCGGTAGCGGCACGTTCCAAGACTGTAGCTATGGAAGGGTTCGCAATGA
CGTCTGCCCTGGCATACTGGTACGAAAAGCCTGCACCAAACACGAGCAGC
AAAAAATTCCTTGACTGAATCATACCTTCGAGATCTAGCTTCAGAACCAC
AAACATCAAGCCCACCCTTTTTCACGCCCAGAAATAATAATTAATGATTT
CTCGGGATGCCGTGTGTGCCAGTGTTAAATAATGAAATGACTCGCACACT
TCGTTTCAAACCCGTCAAATGTTGATGTGTACCAAGGTGTCTCACGTCCT
CCCATGACTGTACAAGAAGTAATTGAGGGAGATGCATTAGTTCAAATCTT
TTTTGCCCCCAGAACCAACTCGCGATGTATTCCTGCACCCCGGGTTGTCT
ACTTGGCGGAGGGGCACTCAACGTAGACTGCGGTGTGTCGCAATGCGATA
TTAGCGGTGTTGTAAGGCCACAAGTTTCGAAACACCTACCACACCAAGGT
GTATTTCCCCTTCGACATGCTCAAACCTCGGAAACAAGCGTACCCCTTTG
TTCTTGCCGGCGTGTCTGCTTGCACAGATCCACGCCCTTCTGTACCGTCA
CGTGCCCTCGTACCGGGAGAAATGCTGCATCCAAGCATCCTCGCTTCATC
CACCATCGGCGCCAGAGGTACGGGTTTCGAGCTCGGTGCAGTCAGAAACG
TTACTCTGTGACTCCTCACCTATGCTCTTGTGCATAGTTTCAGCAGACAT
GTGCACACATCATGCCATCCCTTGATATTCTAACAAAACATTGTGAAGTC
AGTACAAGCGTGTTTCCGCCAGCACCATTGGCCTCGTAGTGCCAATGTTT
GTCGAGCTTGTCCGCTTAGATGGGGAAAACCCAATGTAAACCACAAAGTC
AATCCCCGCCGCTTATGCGGCAATCGGTCGTCTTTTTTGTGCCCGGTCGG
CCGGTCCCAAGCAGACTGTGGGAGAAGCTAGCAGCTCGGCGGACGTGGCC
TCCGTTCTTTTTCCCGCGGTGGTTTGCGTGCAGTGGATATGGGGTGATTT
CCACAGTATCGGTGCTCGCGGCAGCAGCACCGCCGGCACTACTTTAGATG
GTGCCAACGACGACGGAGATCAAACGGTTACGGGGCTGTACCCAGCCCGG
ACTGCGTTCATCCTTCTGGGCCCCGGTCAGCCTAATGCTGCAGACGAGAA
GGCGGGGAAACAAGGACCACTTAGTGGCAGCGAGTCTGGCCCGTCAATAA
TAGTGGCTCGCCTGCTCGCTTCGAGTGCGCACGAGCTTCGGCGCCGTGCC
TCTCAGCTCAAGGTACTGAACATGGGCTTCATTGATTTGCTGCAGAGGAG
CACCCTAGATGTAGGGTAATCATCGTTGCCGATGTACCCGGTACGACTGA
CGGCATGACAACAGTTACAGGATTTTATCGGCGCGTCTGAACATGGCGTT
GGAAACAGAACGGCGTCTGGTGACGATAAGAATACTACGAACTGGACATT
CCCATACATTCTTCCAAGCTTGATTTGTCGTTCGGGAGCATCTTTGAGAG
GATCATGCCGGTACGGTGGGGAGTATCAATAGCGTCGGTTGAGTAGGGTC
GATGCCCTCTATACAGCCGGCCATGTTAAATTTCACGGATACAGACGTTA
CTCGCGGTATTTTGAGCACCTTTGCACTGTGCCGTGGTGTTGACCTGGCA
CATGCCGGCATCACAGAAGACCTTCAACTTCTTGAAGCAACTCATGGAAG
GATCCCTATATATGCTCATTGCCCTTAACTTCGTTGATTCGAACAGTTTG
ACCAACACACCTGCCACCGCCACCTGGTGCATAAACCCCGATCGACTCCT
TCCCATCCAGGCTCTATTGTCCGCGATCGAGAAAAAGGCAGGCGCCGACG
CCACGGCCGCTGCTGTAGAGTCGGGCGGTCCCCCGTTGGCTCTCAAGGAT
CGTTTCAACCTCCTTCTTCAAGACGCCGCCCAGGCCCTCCGTTCTGGACT
TGTCGCACCACCTCTGACGGGACCAGAAGCTGAAAAAGGAACTGTGGAAA
GTGAGTTGGCGCCGACTAAAAGCAAGGAGCTAGCAGCAGCTGCGGAAGCA
CCGGGCTCGAGCTCGGACCAACAAGAAGTGATCGCTCTAACCGTGGATAA
TGTCGAAGCCGTGGCAGGTGTTTTCAACACCGACATCGGAGTGGACGTCG
AAAATGAGCAGCTTTGCCGCTTTTTGCGCGCCGCCACAACAACGACGACC
AAGATTAGTGCTTCACCGTAAATGTCACCCTTTTCACAGGGAAGGGGGCA
ATGTGAGAAGAAACGCATCCGTATGTGCAAATATTGACTTATGTGTGGCC
TTCGGAAATTGTAGAGGGGGGTTTCCCACGAGACAGCGCGTTGGTATGAT
AAGGCCCATGCATTAGCATTTTCCAACGCGCCACGACTTTGAGAATAAAC
AGCCGAACGGGTGCAGGCATTCGACATCTTCAAGGTCCATCACCTCGTTC
CACGACATGCTGTCTGAATATTAAACATGAACGCTTCGCATGAATACCGA
ACGAACTGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1131:5140..7998+

>mRNA_Ecto-sp13_S_contig1131.1163.1 ID=mRNA_Ecto-sp13_S_contig1131.1163.1|Name=mRNA_Ecto-sp13_S_contig1131.1163.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=615bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1131:5140..7998+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGCCAACGACGACGGAGATCAAACGGTTACGGGGCTGTACCCAGCC
CGGACTGCGTTCATCCTTCTGGGCCCCGGTCAGCCTAATGCTGCAGACGA
GAAGGCGGGGAAACAAGGACCACTTATCTGGCCCGTCAATAATAGTGGCT
CGCCTGCTCGCTTCGAGTGCGCACGAGCTTCGGCGCCGTGCCTCTCAGCT
CAAGGCTCTATTGTCCGCGATCGAGAAAAAGGCAGGCGCCGACGCCACGG
CCGCTGCTGTAGAGTCGGGCGGTCCCCCGTTGGCTCTCAAGGATCGTTTC
AACCTCCTTCTTCAAGACGCCGCCCAGGCCCTCCGTTCTGGACTTGTCGC
ACCACCTCTGACGGGACCAGAAGCTGAAAAAGGAACTGTGGAAAGTGAGT
TGGCGCCGACTAAAAGCAAGGAGCTAGCAGCAGCTGCGGAAGCACCGGGC
TCGAGCTCGGACCAACAAGAAGTGATCGCTCTAACCGTGGATAATGTCGA
AGCCGTGGCAGGTGTTTTCAACACCGACATCGGAGTGGACGTCGAAAATG
AGCAGCTTTGCCGCTTTTTGCGCGCCGCCACAACAACGACGACCAAGATT
AGTGCTTCACCGTAA
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