mRNA_Ecto-sp13_S_contig11274.1135.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11274.1135.1
Unique NamemRNA_Ecto-sp13_S_contig11274.1135.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11274.1135.1 vs. uniprot
Match: D7FV96_ECTSI (Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV96_ECTSI)

HSP 1 Score: 511 bits (1317), Expect = 3.420e-174
Identity = 347/376 (92.29%), Postives = 353/376 (93.88%), Query Frame = 1 
Query:    1 MNRKHSRRSRRRRECDRPDQTLRWPEALPAREYDEVMGNVLAEGGDNSSVPSCSALSTALFAATLASRYNDAAAVIRLLEVYGRGIADVHDDNGRTPLHHACRGDDAGLVRLLRRAGADPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLGFTPREDLLNSEPMFARGRLPKVLRATLAYIQDAEASAPQSQSPTWTAQDGYASEDTPATAVSSRRSLIGGHCRHAFDINFNSVPQPPSEGEGPLQQIDTASVSGKETEVLHFHRHHAKGRAHATATDRLERKRDWDLRESLGSGNVLEGRNEDKSFSDGSRRGNRNRLQPVSVVLDWATDTLF 1128
            MNRKHSRRSRRRRECDR D+TLRWPEALPAREYDEVMG VLA GGDNSSVPSCSALSTALFAATLASRYNDAAAVIRLLEVYGRGIADVHDDNGRTPLHHACRGDDAGLVRLLRRAGADPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLGFTPREDLLNSEP FARGRLPKVLRATLAYIQDAEASAPQ QSPTWTAQDGY SE TPAT VSSRRS IGG  RHAFDINFNS P+PPSEGEGPLQQIDTAS SGKETE LH++RHHAKGRAHATATDRLER RDWDLRE  GSGNVLEGRNEDK+FS+GSRRGNRNRL PVSV    ATD LF
Sbjct:  355 MNRKHSRRSRRRRECDRRDRTLRWPEALPAREYDEVMGAVLAGGGDNSSVPSCSALSTALFAATLASRYNDAAAVIRLLEVYGRGIADVHDDNGRTPLHHACRGDDAGLVRLLRRAGADPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLGFTPREDLLNSEPTFARGRLPKVLRATLAYIQDAEASAPQPQSPTWTAQDGYGSEGTPATVVSSRRSPIGGPSRHAFDINFNSGPEPPSEGEGPLQQIDTASASGKETEALHYYRHHAKGRAHATATDRLERNRDWDLRELQGSGNVLEGRNEDKTFSNGSRRGNRNRLVPVSV----ATDPLF 726
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BLAST of mRNA_Ecto-sp13_S_contig11274.1135.1 vs. uniprot
Match: A0A6H5L1T4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1T4_9PHAE)

HSP 1 Score: 407 bits (1046), Expect = 1.420e-137
Identity = 273/413 (66.10%), Postives = 282/413 (68.28%), Query Frame = 1 
Query:  109 MGNVLAEGGDNSSVPSCSALSTALFAATLASRYNDAAAVIRLLEVYGRGIADVHDDNGRTPLHHACRGDDAGLVRLLRRAGADPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------------------------------------------------------------TLGFTPREDLLNSEPMFARGRLPKVLRATLAYIQDAEASAPQ---------SQSPTWTAQDGYASEDTPATAVSSRRSLIGGHCRHAFDINFNSVPQPPSEGEGPLQQIDTASVSGKETEVLHFHRHHAKGRAHATATDRLERKRDWDLRESLGSGNVLEGRNEDKSFSDGSRRGNRNRLQPVSVVLDWATDTLF 1128
            MG VLAEGGDNS VPSCSALSTALFAATLASRYNDAAAVIRLLEV GRGIADV DDNGRTPLHHACRGDDAGLVRLLRRAGADPD   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                                                                                 TLGFTPREDLLNSE MFARGRLPKVLRATLAY+QDAEASAPQ         SQSPTWTAQDGY SEDTPATAVSSRRS IGGH RHAFD NF+S  QPPSEGE PLQQI+TAS SGKETE LH++RHHAKG+AHATATDRLER RDWDLRE  GSGNVLE RNED+S S+GSRRGN NRL PVS+VLDWATD LF
Sbjct:    1 MGAVLAEGGDNSRVPSCSALSTALFAATLASRYNDAAAVIRLLEVCGRGIADVRDDNGRTPLHHACRGDDAGLVRLLRRAGADPDAHDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAEDTPLHLAVGFSSVPNDRVGTCTHPNTFHPGNAINHVASEPSLGVRCLEYVHQGRRRSASFPTNTLDLGPIQVRHGNLSCVKALVEGGAKLSRRNTLGFTPREDLLNSETMFARGRLPKVLRATLAYVQDAEASAPQPQWQASAPQSQSPTWTAQDGYGSEDTPATAVSSRRSSIGGHFRHAFDANFDSDAQPPSEGERPLQQINTASASGKETEALHYYRHHAKGKAHATATDRLERNRDWDLRELQGSGNVLERRNEDESVSNGSRRGNCNRLVPVSMVLDWATDPLF 413
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BLAST of mRNA_Ecto-sp13_S_contig11274.1135.1 vs. uniprot
Match: A0A6H5L134_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L134_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 2.910e-8
Identity = 38/60 (63.33%), Postives = 43/60 (71.67%), Query Frame = 1 
Query:    1 MNRKHSRRSRRRRECDRPDQTLRWPEALPAREYDEVMGNV----LAEGGDNSSVPSCSAL 168
            MNRKHS RSRRRRECDR D+TLRWPEALPAR YDEV  ++    L  GGD   V   +A+
Sbjct:  355 MNRKHSTRSRRRRECDRRDRTLRWPEALPARGYDEVTISLAALMLTAGGDEVHVSDTTAI 414
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11274.1135.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FV96_ECTSI3.420e-17492.29Chain A, 4ank: A Designed Ankyrin Repeat Protein W... [more]
A0A6H5L1T4_9PHAE1.420e-13766.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L134_9PHAE2.910e-863.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11274contigEcto-sp13_S_contig11274:2528..5224 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score518.8
Seed ortholog evalue2.1e-144
Seed eggNOG ortholog2880.D7FV96
Model size1134
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG0504@2759
Ec32 ortholog descriptionAnkyrin repeat
Ec32 orthologEc-14_000270.1
Cds size1134
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462589.5242624-CDS-Ecto-sp13_S_contig11274:2527..26321681462589.5242624-CDS-Ecto-sp13_S_contig11274:2527..2632Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11274 2528..2632 +
1681462589.5337749-CDS-Ecto-sp13_S_contig11274:3301..35741681462589.5337749-CDS-Ecto-sp13_S_contig11274:3301..3574Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11274 3302..3574 +
1681462589.5418081-CDS-Ecto-sp13_S_contig11274:3997..41201681462589.5418081-CDS-Ecto-sp13_S_contig11274:3997..4120Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11274 3998..4120 +
1681462589.5498269-CDS-Ecto-sp13_S_contig11274:4337..45171681462589.5498269-CDS-Ecto-sp13_S_contig11274:4337..4517Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11274 4338..4517 +
1681462589.5578065-CDS-Ecto-sp13_S_contig11274:4771..52241681462589.5578065-CDS-Ecto-sp13_S_contig11274:4771..5224Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11274 4772..5224 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11274.1135.1prot_Ecto-sp13_S_contig11274.1135.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11274 2528..5224 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11274.1135.1

>prot_Ecto-sp13_S_contig11274.1135.1 ID=prot_Ecto-sp13_S_contig11274.1135.1|Name=mRNA_Ecto-sp13_S_contig11274.1135.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=378bp
MNRKHSRRSRRRRECDRPDQTLRWPEALPAREYDEVMGNVLAEGGDNSSV
PSCSALSTALFAATLASRYNDAAAVIRLLEVYGRGIADVHDDNGRTPLHH
ACRGDDAGLVRLLRRAGADPDAHDCQGNSPLAVAAATGSLACLQLLIQRG
SDVNNANEADDTPLHLAVRHGNILCVNALVEGGAQLSRRNTLGFTPREDL
LNSEPMFARGRLPKVLRATLAYIQDAEASAPQSQSPTWTAQDGYASEDTP
ATAVSSRRSLIGGHCRHAFDINFNSVPQPPSEGEGPLQQIDTASVSGKET
EVLHFHRHHAKGRAHATATDRLERKRDWDLRESLGSGNVLEGRNEDKSFS
DGSRRGNRNRLQPVSVVLDWATDTLFE*
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mRNA from alignment at Ecto-sp13_S_contig11274:2528..5224+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11274.1135.1 ID=mRNA_Ecto-sp13_S_contig11274.1135.1|Name=mRNA_Ecto-sp13_S_contig11274.1135.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2697bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11274:2528..5224+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACCGGAAGCACAGCAGGCGGTCACGACGCCGACGCGAATGCGATCG
ACCAGACCAAACTCTCCGCTGGCCGGAGGCCCTACCCGCGCGCGAGTACG
ACGAGGTGACGATCTCATTAGCCACCCTGATGTTGACTGCAGGCGGCGAT
GAAGTTCACGTTTCCCTTACTACAGTTATTTATCGACCTATTGGTAGCAA
TGCGACCTGTCACGCTGAGCAGCACTGAGAAAAAACAGGACCAGCACGTG
GCTCTGAAACGCTACATGGGTCGGACCTACAGTAGCACCAAATCTATGCT
TCGCAGAGAAGGGGGTAATGTCAAGTACCAAGTGGAGCTAAAGGGAGTGT
GACGAGTTTACTCATTTAAGGCCATGATCGAGGCCATGCTAGCGGTGCAC
GACACCGAAAACCAACAATAAATGACGCGTGGTAGGCCGCTCTTCTTGTA
GGCCTCTACGAGCAGTTTCTCTCCACAAGAGGGCCGATAGCAAGTACAAT
CGATTGAAGAAAGAGACAAGAGAAAAAAAAGAGGGGATAATATTCGCTTA
TATGGTGCCATAAAAGTCACACCTACGTGTTGGCGTATGCGAGACTTCTC
ATAGTCTTCGGCTCTCATGGTTCTACTGTAGGTGACGAAGTCGGTCTTTT
CGTAGTACAAACTATGTAGCACGAGACAAAATCCCTGCTGCTGGGCGTGG
AGCGGTGCTAGTTGCGAGATGTTCAGGGATCTGTAGACTGATACTGTGCG
TTCTTGACGTGCGCCACGCGACAGGTCATGGGAAACGTCCTCGCGGAAGG
AGGAGACAACTCCAGTGTACCATCGTGCTCGGCATTGTCTACAGCCCTGT
TCGCTGCTACGCTGGCGTCACGTTACAACGACGCAGCGGCCGTGATCCGT
CTTCTGGAAGTCTACGGGCGTGGGATAGCAGACGTGCACGACGACAACGG
CCGGACACCCCTTCATCATGCCTGCCGCGGAGACGACGCTGGATTGGTCC
GCCTTCTCCGACGGGCTGGAGCCGATCCCGACGCTCACGACTGCCAGGTA
CAGTAAGTGGTACCAACCTGTGGAATGTAAACTCATAATGAAACTGAATC
TTGGAGCCGAAAAACTGCCTAACACGCATTTTTTACGTTAGAGTCAATTT
TTTGAGATGTTGTTGCTTATCATTTGTTCATGTATTTTAGCAGAGATTCT
AGAAATTGAACTTCTTGAGAGGGAAGTACAACGGTACAGACAGAATCCCG
ACTCGGGTGCTCAAGCTGGAGTTGAGAGCGCAGGGGGGCCCGACCACACC
AAGTACACCGCCGTTCATGAACGTTGACGATAACTTGAAGTCGTCCTCAA
ACAACAGTGTACTGGAAAACAACTAATCGTTGTCCGATACCCTCTATCTT
GTCGCCCCGATACGTGTTCGCAGTCACAGTTTACCAGTGTTCGGTTGTGT
CTTGCTGATCGTGTCTACAGGGGAACTCGCCCTTAGCAGTGGCCGCTGCC
ACGGGGAGCCTGGCATGTCTGCAACTCTTGATTCAGAGAGGAAGCGACGT
CAACAACGCCAACGAAGCCGACGACACACCGCTACACCTTGCGGTGGGAT
TCAGTAGCGTTCCGAACGAAAGAGTGGGTACATGTACCCATGGCTCTCGA
AGCCCGTCCCCCAAACCCCTCCCACCCAGGGAATGTTATCGATCATATGG
CTTTGGATCCATCATTGGATATACCCTATCGCTGTCTTGAATCTGTGCAT
CAAGGCTGACGACGCTATGCCGCCTTTCCCACCAACACGCTTGATCTTGG
CCCGATCCAGGTGCGGCACGGCAACATATTGTGTGTCAACGCGCTAGTGG
AGGGTGGTGCACAGCTCAGCCGGCGTAACACCCTGGGCTTTACCCCCAGG
GAAGATCTGCTCAACTCAGAACCCATGTTTGCTAGGGGCCGGTTGCCCAA
GGTTCTTCGAGCAACGTTGGCCTACATTCAAGACGCCGAGGTTAGCTCAT
TCAAAGGAATACCGAAAAATACACATGCGATTCTTTCACTCTGAGCACCG
TCTATGTGCGATGATCTTCTTTCGACGAGGAAGAGAAACGACAAGCCCTT
TTGAATCAACCGCTCTGCCTGCCTTTTCGTTGTCGCTTCCTTGGTTTCGA
GCACAAGCAATCACCGATGGCCCATCTTTGCCCGTCTTCTACCCCCCAAC
CTGCTGTTGAATTGTAGGCCTCAGCACCACAGCCCCAATGGCAGGCATCA
GCACCACAGTCCCAGTCTCCAACTTGGACAGCTCAGGATGGCTACGCGTC
TGAAGACACACCGGCCACAGCCGTTTCTTCTCGCCGAAGCCTCATCGGTG
GTCACTGTCGCCACGCCTTCGACATTAACTTCAACTCCGTCCCCCAACCC
CCTTCCGAGGGAGAGGGACCGCTTCAGCAAATTGACACTGCTAGTGTGAG
TGGGAAAGAAACCGAGGTCTTGCATTTCCACAGGCATCACGCGAAGGGGA
GAGCGCATGCAACCGCTACGGATCGGCTAGAGCGCAAGCGGGATTGGGAT
CTTCGGGAATCGCTAGGAAGCGGGAACGTTCTTGAGGGGCGGAATGAAGA
CAAGTCTTTTTCCGACGGCAGCCGACGAGGGAATCGCAACAGGTTGCAAC
CGGTTTCTGTGGTACTTGACTGGGCAACAGATACTTTATTCGAGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11274:2528..5224+

>mRNA_Ecto-sp13_S_contig11274.1135.1 ID=mRNA_Ecto-sp13_S_contig11274.1135.1|Name=mRNA_Ecto-sp13_S_contig11274.1135.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1134bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11274:2528..5224+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACCGGAAGCACAGCAGGCGGTCACGACGCCGACGCGAATGCGATCG
ACCAGACCAAACTCTCCGCTGGCCGGAGGCCCTACCCGCGCGCGAGTACG
ACGAGGTCATGGGAAACGTCCTCGCGGAAGGAGGAGACAACTCCAGTGTA
CCATCGTGCTCGGCATTGTCTACAGCCCTGTTCGCTGCTACGCTGGCGTC
ACGTTACAACGACGCAGCGGCCGTGATCCGTCTTCTGGAAGTCTACGGGC
GTGGGATAGCAGACGTGCACGACGACAACGGCCGGACACCCCTTCATCAT
GCCTGCCGCGGAGACGACGCTGGATTGGTCCGCCTTCTCCGACGGGCTGG
AGCCGATCCCGACGCTCACGACTGCCAGGGGAACTCGCCCTTAGCAGTGG
CCGCTGCCACGGGGAGCCTGGCATGTCTGCAACTCTTGATTCAGAGAGGA
AGCGACGTCAACAACGCCAACGAAGCCGACGACACACCGCTACACCTTGC
GGTGCGGCACGGCAACATATTGTGTGTCAACGCGCTAGTGGAGGGTGGTG
CACAGCTCAGCCGGCGTAACACCCTGGGCTTTACCCCCAGGGAAGATCTG
CTCAACTCAGAACCCATGTTTGCTAGGGGCCGGTTGCCCAAGGTTCTTCG
AGCAACGTTGGCCTACATTCAAGACGCCGAGGCATCAGCACCACAGTCCC
AGTCTCCAACTTGGACAGCTCAGGATGGCTACGCGTCTGAAGACACACCG
GCCACAGCCGTTTCTTCTCGCCGAAGCCTCATCGGTGGTCACTGTCGCCA
CGCCTTCGACATTAACTTCAACTCCGTCCCCCAACCCCCTTCCGAGGGAG
AGGGACCGCTTCAGCAAATTGACACTGCTAGTGTGAGTGGGAAAGAAACC
GAGGTCTTGCATTTCCACAGGCATCACGCGAAGGGGAGAGCGCATGCAAC
CGCTACGGATCGGCTAGAGCGCAAGCGGGATTGGGATCTTCGGGAATCGC
TAGGAAGCGGGAACGTTCTTGAGGGGCGGAATGAAGACAAGTCTTTTTCC
GACGGCAGCCGACGAGGGAATCGCAACAGGTTGCAACCGGTTTCTGTGGT
ACTTGACTGGGCAACAGATACTTTATTCGAGTAG
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