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Homology
BLAST of mRNA_Ecto-sp13_S_contig11236.1100.1 vs. uniprot
Match: D8LHD4_ECTSI (Putative leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHD4_ECTSI) HSP 1 Score: 429 bits (1102), Expect = 5.160e-139 Identity = 222/321 (69.16%), Postives = 255/321 (79.44%), Query Frame = 2
Query: 617 GDRPEVLRSHDFEFELEVPGLRRNVPALIGHCASSAEAGDGKQCLLHPVVTCLARAGESFDPPLRLRFPVGDVESMESGSDYGSDGDAEVAYRGHLESTFSALTRQDASSQWFSIDVAIVQTEEGVFVLEVMISHFCDFALKQDIINVDAGGVELVFLPRLKRKTRRSYYHFVNLGTENLVVHCWGAVGERGFLDSFRFKVAVGPTSGDAEVEARRTRADIESTGVYNVGVPGKPLGERRKGACVLVDGSESLTVAHTTQETIRP--LMGNTHELVQAWGSRCMQHKYAIIFGSLTGSMRSVPNLKVEDGVNVGELIKSMV 1573
G P VLRS+ FEFELEVP L RNVPALIG +SSAE DG++CLLHPVVTCLAR+GE FDPPL LRFPVGDV SMESGSD GSD DAEV YR +LESTFS LTR+ ASS+W +D I QT+EG+FVLEV +SHFCDFALKQ I VD+GGVELV LP+LK K+RRS+YHFVNLGTENLVVHCWG +RGFL+SFR K+ G GDAEVEA RT D TGVY V VPG P+ + R AC++V+G ESLTVA+TTQ+T+R L G+THELVQ WG+R MQHK+A+IFG L S VPNLKVEDGVNVGEL++S V
Sbjct: 453 GQHPAVLRSNGFEFELEVPRLGRNVPALIGLRSSSAEVVDGEKCLLHPVVTCLARSGEVFDPPLCLRFPVGDVNSMESGSDCGSD-DAEVTYRAYLESTFSTLTRKHASSEWVPVDGTIEQTDEGIFVLEVQVSHFCDFALKQ-AIKVDSGGVELVKLPQLKHKSRRSHYHFVNLGTENLVVHCWGVTRKRGFLESFRLKLGFGLNGGDAEVEATRTLVDAPGTGVYKVDVPGGPVDDPRNEACLVVNGFESLTVAYTTQKTVRAGTLFGSTHELVQVWGTRHMQHKHAMIFGILPESAL-VPNLKVEDGVNVGELVRSKV 770
BLAST of mRNA_Ecto-sp13_S_contig11236.1100.1 vs. uniprot
Match: A0A6H5K655_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K655_9PHAE) HSP 1 Score: 300 bits (767), Expect = 1.430e-94 Identity = 170/321 (52.96%), Postives = 206/321 (64.17%), Query Frame = 2
Query: 617 GDRPEVLRSHDFEFELEVPGLRRNVPALIGHCASSAEAGDGKQCLLHPVVTCLARAGESFDPPLRLRFPVGDVESMESGSDYGSDGDA-EVAYRGHLESTFSALTRQDASSQWFSIDVAIVQTEEGVFVLEVMISHFCDFALKQDIINVDAGGVELVFLPRLKRKTRRSYYHFVNLGTENLVVHCWGAVGERGFLDSFRFKVAVGPTSGDAEVEARRTRADIESTGVYNVGVPGKPLGERRKGACVLVDGSESLTVAHTTQETIRPLMGNTHELVQAWGSRCMQHKYAIIFGSLTG-SMRSVPNLKVEDGVNVGELIKSMV 1573
GD P+VLR+HD +F+LEVP L RNVP LIG C+SSAE DGKQCLLHPVV CLAR GESFDP LRLR P+GD SMESGSD SD +VAYR +L S F+ +TR+DASS W ID I Q E GVFVLEV + HFCDFAL Q I +V G +E+V LP+LK K RRS++HFVN G ENLV HC GAV + GF D F+ + G TS + E D ST + C + G+ES+TVA T+Q R H + Q WG MQHK+A++FG L+G V NLKV+DG + G+L+KS V
Sbjct: 32 GDSPDVLRNHDLDFDLEVPDLGRNVPTLIGLCSSSAEVVDGKQCLLHPVVRCLARNGESFDPNLRLRLPLGDEASMESGSDGASDDXXXDVAYRAYLASKFTVVTREDASSGWVPIDGTIQQAEGGVFVLEVAVPHFCDFALSQGI-SVPRGCMEIVPLPKLKGKPRRSHFHFVNQGEENLVAHCRGAVEKTGFWDFFKINLGAGATSANVE--------DPASTN------------PNKSEVCRVFLGTESVTVAWTSQ---RYPQNARHRIPQVWGFSPMQHKHAMVFGPLSGIDTCQVSNLKVDDGESFGKLVKSKV 328
BLAST of mRNA_Ecto-sp13_S_contig11236.1100.1 vs. uniprot
Match: A0A6H5KIZ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIZ7_9PHAE) HSP 1 Score: 277 bits (709), Expect = 6.710e-83 Identity = 161/323 (49.85%), Postives = 203/323 (62.85%), Query Frame = 2
Query: 617 GDRPEVLRSHDFEFELEV-PGLRRNVPALIGH--CASSAEAGDGKQCLLHPVVTCLARAGESFDPPLRLRFPVGDVESMESGSDYGSDGDAEVAYRGHLESTFSALTRQDASSQWFSIDVAIVQTEEGV-FVLEVMISHFCDFALKQDIINVDAGGVELVFLPRLKRKTRRSYYHFVNLGTENLVVHCWGAVGERGFLDSFRFKVAVGPTSGDAEVEARRTRADIESTGVYNVGVPGKPLGERRKGACVLVDGSESLTVAHTTQETIRPLMG-NTHELVQAWGSRCMQHKYAIIFGSLT-GSMRSVPNLKVEDGVNVGELIKS 1567
G+R EVLRS D EFELEV PGL +N PAL+G C+ SAE +G+Q LLH V+TCL RAGE FDPPL LRFPVGD +SMESGS GS DAE AYR HL+STFSA+ R DASS+W I IV+ + G F LEV ISHFCDF L Q I+V+ G EL+ LP+ +R+++YHF NLGT+ LV H WGA + F++ R AV G E RT D+ +G Y V VPG+ + C E TVA TTQE I P G H+LVQ WGS M + ++ G++ + ++ NL+V+DG +VG L+ S
Sbjct: 244 GNRAEVLRSPDSEFELEVQPGLNKNYPALVGLGLCSGSAEYVNGEQYLLHCVLTCLTRAGEKFDPPLLLRFPVGDEDSMESGSLDGSQDDAEEAYRAHLQSTFSAVKRDDASSEWVPIGGDIVRMKGGRDFFLEVKISHFCDFGLSQ-AIDVEVGYTELIELPKKMFSSRKTHYHFANLGTKPLVFHVWGAGRKEVFVNVVRANAAVDLAGGSVGAEMERTLVDVPGSGPYEVHVPGEAGSGSKPQVCRKFVDLEKPTVAWTTQERISPSSGVEGHQLVQVWGSTPMLSGHVLVVGAMAPDATPAIANLRVDDGEDVGRLVWS 565
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Stop | 0 |
| Start | 1 |
| Seed ortholog score | 431.0 |
| Seed ortholog evalue | 4.9e-118 |
| Seed eggNOG ortholog | 2880.D8LHD4 |
| Model size | 1573 |
| Hectar predicted targeting category | other localisation |
| Exons | 7 |
| EggNOG free text desc. | regulation of response to stimulus |
| EggNOG OGs | 2R960@2759,COG4886@1 |
| Cds size | 978 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681462586.98913-UTR-Ecto-sp13_S_contig11236:823..896 | 1681462586.98913-UTR-Ecto-sp13_S_contig11236:823..896 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig11236 824..896 + |
| 1681462587.0000584-UTR-Ecto-sp13_S_contig11236:1262..1334 | 1681462587.0000584-UTR-Ecto-sp13_S_contig11236:1262..1334 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig11236 1263..1334 + |
| 1681462587.0124567-UTR-Ecto-sp13_S_contig11236:2300..2372 | 1681462587.0124567-UTR-Ecto-sp13_S_contig11236:2300..2372 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig11236 2301..2372 + |
| 1681462587.0225365-UTR-Ecto-sp13_S_contig11236:2475..2559 | 1681462587.0225365-UTR-Ecto-sp13_S_contig11236:2475..2559 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig11236 2476..2559 + |
| 1681462587.030585-UTR-Ecto-sp13_S_contig11236:2644..2855 | 1681462587.030585-UTR-Ecto-sp13_S_contig11236:2644..2855 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig11236 2645..2855 + |
| 1681462587.03883-UTR-Ecto-sp13_S_contig11236:3326..3397 | 1681462587.03883-UTR-Ecto-sp13_S_contig11236:3326..3397 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig11236 3327..3397 + |
| 1681462587.0484757-UTR-Ecto-sp13_S_contig11236:3506..3518 | 1681462587.0484757-UTR-Ecto-sp13_S_contig11236:3506..3518 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig11236 3507..3518 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681462587.056401-CDS-Ecto-sp13_S_contig11236:3518..4496 | 1681462587.056401-CDS-Ecto-sp13_S_contig11236:3518..4496 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig11236 3519..4496 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig11236.1100.1 >prot_Ecto-sp13_S_contig11236.1100.1 ID=prot_Ecto-sp13_S_contig11236.1100.1|Name=mRNA_Ecto-sp13_S_contig11236.1100.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=326bp
MLWHGLSGDRPEVLRSHDFEFELEVPGLRRNVPALIGHCASSAEAGDGKQ CLLHPVVTCLARAGESFDPPLRLRFPVGDVESMESGSDYGSDGDAEVAYR GHLESTFSALTRQDASSQWFSIDVAIVQTEEGVFVLEVMISHFCDFALKQ DIINVDAGGVELVFLPRLKRKTRRSYYHFVNLGTENLVVHCWGAVGERGF LDSFRFKVAVGPTSGDAEVEARRTRADIESTGVYNVGVPGKPLGERRKGA CVLVDGSESLTVAHTTQETIRPLMGNTHELVQAWGSRCMQHKYAIIFGSL TGSMRSVPNLKVEDGVNVGELIKSMV back to topmRNA from alignment at Ecto-sp13_S_contig11236:824..4496+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig11236.1100.1 ID=mRNA_Ecto-sp13_S_contig11236.1100.1|Name=mRNA_Ecto-sp13_S_contig11236.1100.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3673bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11236:824..4496+ (Ectocarpus species13 EcNAP12_S_4_19m) GGTGCCATACCGCCGCAGCTTGGTCGACTCGGTGCTCTTGAGGTGCTGGA
TCTTGGCTCCAACAAGCTCTCCGGTGGGCAAGACCAGTGTTTGCATGGGT
CACAGGTTGGGTCACAGGTTGGCTCACGTCCTTGGCGGTTGTAATCCTCG
TGTGGTCAAGGCCGAGGAACATGCGGACATTGTCCTGGGGCGTTGTCCTT
GGGTGCGGTGAGTCATCGGGTGGTGTTCGACAGAGGTGTGCCGAGATGGA
CGTTGTGTGCGGGCGTGGTGCTCCCCATGCGCTTGAACAAGTAACCTAAG
CCCTTTTGCCTCGAAGGCATGAGACTGTGTTAGTTGTGTTTGATGGCGAT
GTGGGGCTGCAGCCGTGGTTGGCGCTACAGCCGGGCCGATTCATGCTAGT
CTGCCTACAGTGGTGTTTCATCGCTGGTGCTGTATGCAGGTATCATACCG
CCGGAGCTTGGCGGCCTCGTTGCTCTTCGGGTGCTAAATTTTCGCGACAA
CCAGCTCTCCGGTAAGCAAGACCAGTGTTTGCATGGGTCACTGGTTCGGG
TCACAGGTGGTATGCGTCCTTGGCCATTGTTAATTTGGTGAGCGGCCAAC
GTGAAGAAGCGTGCAGAATTTTTCTCGAGGCAGTATAGTCTGGTGTGGTA
AGTCACTGGGGGGCGGTCCTATGGTCGGGTTGCACAGGATGGATGCTGTA
CGTAGGCATGTGATTTTCTATCGAGGATGAGATGCCCAGGTTTTGGTTGG
TGACAACGATAGTACTCTCAATGTCGCCACCCTTGGACCTACAGAAGTGC
TGCGATAAGAATGATGTCGGGGTATGGATTTGAATACTTTTGGTCGCGTT
CAATGACCGCCCTGGTGGTCAAGTTGCTAACCTCGTAAATCTACGAACGG
GCGGTTGTGAGTCCGATGCTATCTTTGTTGCCGAAAAACAGAATATCGCA
ACTTGCGGTGGAAAACCATAATTTGGTGAATATGTACTTGAACTGGATGG
TCGACGACCAAACAGGACCGTCCTCGTGAAACTTTGAGGTAAGCACCGCA
AGCGGTAAGGTGGAGTAGACCTACCGTGTTAACCTTGGCGAATGCGTCAA
ACCTATCCACCAAATGGTGTTAGAATTGCGTCAGATAAATGGGACAGGCA
CAGACCTTGGTCCTTTTTTGCTCTCCGAACGTAGGTAAAGTTGCAATCGC
GTTGGCGGCGTCATCCCGGTTGGAATTCCAACGCTTGTCCAGCGTGCATT
CCGTTGGAATTGCGAAGAATATATGTTTCGTATCTCCCCTACACGTCTGG
AAGCATGACAGGTTACTCGCGTGCGCCATCACTTGCAACACCGAATCGCA
GGCCGATGTTAAATGGCGACCACGCGTGGGAGACAAAACATGCTGATAAA
AAGGCACCACTCCTTGTGAATATATTGCGTGCTTTTTCCTTGCCTTGCGT
GATTCTATTTTCCCATCATACACGCAGGGTTCGTGCCAGCACAGCTTGTG
AAGCTCCGCAACCTGCAGCACCTGGTTCTCGGCGGCAACCAGCTAAGTGG
TGAGGATTACGGAGATGTGTCCGGACGCTCGCACGTTGTCTTAGCGCTTG
GGTTCAAATTGCCTAAGTTTACATTGCTCGCCCCCATGTGCGTGAGTCAC
AGGTACGGTGCCCTCACGCCAGCAGCTGGAAAATCTTCGCGATGCTCTCG
CTTCCCCGGTCTACAGGCACGAAGGTGTGTCGTTCAGTTGGGCCTGGAAT
GTCCGAATTAAGAGGCTGGCCTTGCCTGGCGCAGAAATCTCGCTTACGAC
TTTCAAAACACCGAAGCTAAGGCTTCATCCGACGTTGCTCTGTCACGGCA
GAGTCCGAGCAAGCCGGGACGGGGATGGTACCCACCGACGAATCGATGAT
GGCGTGGGAAATGATGAAAACAGAGAACGCCGCGGATGGAATAACCACCA
TGACAAGCGGAACGACAATGCCCTCGAGCGGGAAGGCTGAACGCAACAAA
GTTGTGGCTTTATACATTTTTGCGCGCCTGTGGTTGTTGTCTTGTCAGCG
TGGCGAGGCGTACGCTGATCACTCTAGGCTTCCCAATCTCCGGCCAACAA
TTTAACTCAACCGACGTTTATCCCTCACAGCAAATCCCATCGAACCAGGA
TGGTGCAGCGGCGCCATGATGGTTCAATGAGGACAGGGAAGAATGCGAAT
GTAGAGGGTCCAGAGGTGGGATAAACCACCATACGAACACGAGGAGTGGC
TTGCACGATTTTGCCTGTTCTGTGGTTGCGTGGCTTCCTATGGGCATCTG
TACGTTGAGCGCATTATCGTGCCCTCGAACTGTTGACGATTGTGTCCTCT
TATATGTTTTGCCACACTAGTTCTGCAAACGAAATTGGTAACAGCTCTGG
TGCACTAAAGATGCGATGCTTGAATGCGTGTGGTGCGCTTTCGAACACGA
TTTCCGGCCCTGGCGATCATCACAATAGCGCAAGGATCAGCAAAGCCACT
GAGCGAACCCGAAGCAACGGCGACGGGAGTCGACCGGGGTACAGTTATCG
ACGCGAAGATGGCCACCATTTTAGGTATGTCATGAGCGATGCGCGACCTA
CATCGATACCCAAGTGGCATGAGAAATTGAGAGGCGGCGAAATTTTTGTG
TGCTGACCTTACGTTTTCTCGTGCAACTCTCAGATTTCGACAGGTATGTT
GTGGCATGGCCTTTCAGGAGATCGACCAGAGGTTCTCCGCAGTCATGATT
TTGAGTTCGAGCTCGAGGTTCCCGGACTGAGGAGGAATGTTCCTGCCCTC
ATCGGCCATTGCGCGAGCTCAGCGGAAGCAGGAGACGGAAAACAATGCCT
GCTACATCCCGTCGTAACGTGCCTCGCACGTGCTGGAGAGTCGTTCGACC
CCCCTCTCCGTCTGCGGTTTCCCGTCGGGGACGTAGAATCGATGGAATCG
GGTTCCGATTACGGCAGCGACGGTGACGCTGAGGTGGCGTATCGCGGTCA
CCTTGAGTCCACCTTTTCGGCGTTGACGCGACAAGACGCAAGTTCACAGT
GGTTCTCGATTGATGTGGCTATCGTTCAAACGGAGGAGGGCGTTTTTGTT
CTGGAGGTGATGATTTCTCACTTTTGCGATTTCGCCCTCAAGCAAGACAT
CATCAACGTGGACGCTGGTGGTGTAGAACTGGTATTTTTGCCACGGCTGA
AGCGCAAAACCAGGCGGTCGTACTACCACTTCGTAAATCTAGGCACGGAG
AACCTCGTGGTCCACTGTTGGGGTGCTGTTGGCGAGAGGGGTTTCCTTGA
CTCTTTTCGGTTCAAGGTAGCAGTCGGACCAACGAGCGGGGACGCCGAGG
TAGAGGCAAGGCGAACGCGTGCAGACATCGAAAGCACAGGGGTATACAAC
GTGGGTGTACCAGGTAAACCCCTTGGTGAGCGTAGAAAGGGGGCTTGCGT
GTTGGTCGATGGCTCCGAGTCGCTGACAGTGGCGCACACAACGCAAGAAA
CGATTCGCCCTCTGATGGGGAATACTCATGAGCTGGTTCAAGCGTGGGGT
AGTAGGTGCATGCAGCACAAGTACGCCATCATTTTCGGCTCCTTGACTGG
TTCAATGCGTTCGGTACCCAATTTGAAAGTGGAAGACGGTGTCAACGTAG
GCGAACTGATTAAGTCAATGGTG back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig11236:824..4496+ >mRNA_Ecto-sp13_S_contig11236.1100.1 ID=mRNA_Ecto-sp13_S_contig11236.1100.1|Name=mRNA_Ecto-sp13_S_contig11236.1100.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=978bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11236:824..4496+ (Ectocarpus species13 EcNAP12_S_4_19m) ATGTTGTGGCATGGCCTTTCAGGAGATCGACCAGAGGTTCTCCGCAGTCA TGATTTTGAGTTCGAGCTCGAGGTTCCCGGACTGAGGAGGAATGTTCCTG CCCTCATCGGCCATTGCGCGAGCTCAGCGGAAGCAGGAGACGGAAAACAA TGCCTGCTACATCCCGTCGTAACGTGCCTCGCACGTGCTGGAGAGTCGTT CGACCCCCCTCTCCGTCTGCGGTTTCCCGTCGGGGACGTAGAATCGATGG AATCGGGTTCCGATTACGGCAGCGACGGTGACGCTGAGGTGGCGTATCGC GGTCACCTTGAGTCCACCTTTTCGGCGTTGACGCGACAAGACGCAAGTTC ACAGTGGTTCTCGATTGATGTGGCTATCGTTCAAACGGAGGAGGGCGTTT TTGTTCTGGAGGTGATGATTTCTCACTTTTGCGATTTCGCCCTCAAGCAA GACATCATCAACGTGGACGCTGGTGGTGTAGAACTGGTATTTTTGCCACG GCTGAAGCGCAAAACCAGGCGGTCGTACTACCACTTCGTAAATCTAGGCA CGGAGAACCTCGTGGTCCACTGTTGGGGTGCTGTTGGCGAGAGGGGTTTC CTTGACTCTTTTCGGTTCAAGGTAGCAGTCGGACCAACGAGCGGGGACGC CGAGGTAGAGGCAAGGCGAACGCGTGCAGACATCGAAAGCACAGGGGTAT ACAACGTGGGTGTACCAGGTAAACCCCTTGGTGAGCGTAGAAAGGGGGCT TGCGTGTTGGTCGATGGCTCCGAGTCGCTGACAGTGGCGCACACAACGCA AGAAACGATTCGCCCTCTGATGGGGAATACTCATGAGCTGGTTCAAGCGT GGGGTAGTAGGTGCATGCAGCACAAGTACGCCATCATTTTCGGCTCCTTG ACTGGTTCAATGCGTTCGGTACCCAATTTGAAAGTGGAAGACGGTGTCAA CGTAGGCGAACTGATTAAGTCAATGGTG back to top
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