mRNA_Ecto-sp13_S_contig1120.1063.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1120.1063.1
Unique NamemRNA_Ecto-sp13_S_contig1120.1063.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1120.1063.1 vs. uniprot
Match: A0A6H5K2H0_9PHAE (PARP-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2H0_9PHAE)

HSP 1 Score: 309 bits (792), Expect = 2.260e-93
Identity = 403/609 (66.17%), Postives = 406/609 (66.67%), Query Frame = 1 
Query:    1 QDKADQLDAATLAKLDEVGPMIPIPPRSAVRDPTPSPPIIGRQGLRRARRSMGASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGASPHSAAGDLLSLPGAPPDDIYHSPFAGSSPLGGLXXXXXXXXXXXXQGDAGSPLLFDDAGSGFGHRGPAD--DATGGAGAAGTAALQMPPSGIPGKAMALSSPGAGEAAAXXXXGTALGLSGFEGFPASPEPAPLTADEEAGAGGGVGELGASAGGPSSLLGHDGAEADDPVASALRGIGDDVDLIGGSDDPYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGAFTAPTAAAGGVGHEAAPAXXPASPGVGGGSXXXXSSALAPETAAGAEGGPATDAPQAGTGLRERLSTGPPDALATTPSPLPXXXXXXXXXXXXXXXXXXATAEESPSLPPGDSSSASPGPSGT 1821
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
Sbjct:  103 EDKADQLDAATLAKLDEVCPMIPIPPRSAVRDPTPSPPIIGRQGLRRARRSMGASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEGVPKLXXXXXXXXXXXXXXXXXXXAA--------------------------------------GASPHSAAGDLLSLPGAPPDDIYHSPFAGSSPLGSLGGGAAGVAGGRGQGAVGSPLLFDDPGSGFGHKGPAGAGDATGGXXXXXAAALQMPPSGISGKXXXXXXXXXXXXXXXXXXXXXXXXXGIEGFPASPDRALLPADEETGAGGG-GELGASAGGPSSLLGHDGAEADDPVASALRGIGDDVDLIGGSDDPYGATSTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------------------------------------------------------------------------------------ALAPETAGAAEGGPATDAPQAGTGLRESLSTGPRAALATTPSPLPXXXXXXXXXXXXXXDGE--TAEESPSLPPGDSSSASPGPSGT 583
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BLAST of mRNA_Ecto-sp13_S_contig1120.1063.1 vs. uniprot
Match: D7G9H8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9H8_ECTSI)

HSP 1 Score: 277 bits (708), Expect = 7.930e-80
Identity = 368/451 (81.60%), Postives = 372/451 (82.48%), Query Frame = 1 
Query:  499 ASPHSAAGDLLSLPGAPPDDIYHSPFAGSSPLGGLXXXXXXXXXXXXQGDAGSPLLFDDAGSGFGHRGPADDATGGAGAAGTAALQMPPSGIPGKAMALSSPGAGEAAAXXXXG--TALGLSGFEGFPASPEPAPLTADEEAGAGGG-VGELGASAGGPSSLLGHDGAEADDPVASALRGIGDDVDLIGGSDDPYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGAFTAPTAAAGGVGHEAAPAXXPASPGVGGGSXXXXSSALAPETAAG-------AEGGPATDAPQAGTGLRERLSTGPPDALATTPSPLPXXXXXXXXXXXXXXXXXXATAEESPSLPPGDSSSASPGPSGT 1821
            ASPHSAAGDLLSLPGAPPDDIYHSPFAGSSPLGG XXXXXXXXXXXX    GSPLLFDD GSGFGH+GPADDATGGAGAAG AALQMP SG+PGK MA+SSPGAGEA  XXXX   TALGLSG EGFPASP+PAPL ADEE GAGGG VGELGASAGGPSSLLGHDGAEADDPVASALRGIGDDVDLIGGSDDPYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                     XX          XXXX                  AEGGPATDAPQAGTGLRE LSTGPP  LATTPS LP  XXXXXXXXXX      ATAEESPSLPPGDSSSASPGPSGT
Sbjct:  262 ASPHSAAGDLLSLPGAPPDDIYHSPFAGSSPLGGXXXXXXXXXXXXXXXXXGSPLLFDDPGSGFGHKGPADDATGGAGAAGAAALQMPLSGMPGKGMAVSSPGAGEAXXXXXXXXXTALGLSGLEGFPASPDPAPLPADEEVGAGGGGVGELGASAGGPSSLLGHDGAEADDPVASALRGIGDDVDLIGGSDDPYGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEGGPATDAPQAGTGLRESLSTGPPGTLATTPSLLPPPXXXXXXXXXXVG----ATAEESPSLPPGDSSSASPGPSGT 708
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1120.1063.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K2H0_9PHAE2.260e-9366.17PARP-type domain-containing protein n=1 Tax=Ectoca... [more]
D7G9H8_ECTSI7.930e-8081.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1120contigEcto-sp13_S_contig1120:1053..3034 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1982
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-28_000970.1
Cds size1764
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462583.9383175-UTR-Ecto-sp13_S_contig1120:1052..11121681462583.9383175-UTR-Ecto-sp13_S_contig1120:1052..1112Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1120 1053..1112 +
1681462583.9589794-UTR-Ecto-sp13_S_contig1120:2876..30341681462583.9589794-UTR-Ecto-sp13_S_contig1120:2876..3034Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1120 2877..3034 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462583.9488537-CDS-Ecto-sp13_S_contig1120:1112..28761681462583.9488537-CDS-Ecto-sp13_S_contig1120:1112..2876Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1120 1113..2876 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1120.1063.1prot_Ecto-sp13_S_contig1120.1063.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1120 1113..2876 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1120.1063.1

>prot_Ecto-sp13_S_contig1120.1063.1 ID=prot_Ecto-sp13_S_contig1120.1063.1|Name=mRNA_Ecto-sp13_S_contig1120.1063.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=588bp
MIPIPPRSAVRDPTPSPPIIGRQGLRRARRSMGASAAGGGGSSSAGAGGG
GADGDEEDDNDSGDNRGGGRGGGGGGMGSGSSSSFTSLPARTPPALLIPR
RTDSGHGGDSPVLPPPEKVPKLDDDEDGDDDDRAGGSAGAAAGAAGASPH
SAAGDLLSLPGAPPDDIYHSPFAGSSPLGGLGGAAAGVAGGGGQGDAGSP
LLFDDAGSGFGHRGPADDATGGAGAAGTAALQMPPSGIPGKAMALSSPGA
GEAAAAAAAGTALGLSGFEGFPASPEPAPLTADEEAGAGGGVGELGASAG
GPSSLLGHDGAEADDPVASALRGIGDDVDLIGGSDDPYGGASAAASHAVP
PTGGGGGGVMLGLTTTADPTPVAPAALAAQAAPAAVSTPPPTAPPASAVF
SPPPATATSTAATPPAATSASPVLFQPAAAPAASPLPTTPPSTTATPTTL
AAAAAAAAAAAVGAFTAPTAAAGGVGHEAAPAPAPASPGVGGGSSAAASS
ALAPETAAGAEGGPATDAPQAGTGLRERLSTGPPDALATTPSPLPPPPPA
AAGAAAAAAGGDGATAEESPSLPPGDSSSASPGPSGT*
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mRNA from alignment at Ecto-sp13_S_contig1120:1053..3034+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1120.1063.1 ID=mRNA_Ecto-sp13_S_contig1120.1063.1|Name=mRNA_Ecto-sp13_S_contig1120.1063.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1982bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1120:1053..3034+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGACAAGGCGGACCAATTAGATGCCGCGACTCTGGCCAAGCTCGACGA
GGTCGGCCCGATGATACCGATCCCGCCGCGCTCCGCCGTCCGGGACCCCA
CCCCGTCCCCGCCAATCATCGGCCGCCAGGGGCTCCGCCGCGCGAGACGG
TCGATGGGCGCCAGCGCCGCCGGCGGCGGTGGTTCTTCCTCTGCCGGTGC
CGGCGGCGGCGGGGCGGACGGGGACGAAGAAGACGATAACGATAGCGGGG
ACAACCGGGGGGGGGGGCGCGGGGGGGGCGGAGGGGGTATGGGCAGCGGG
TCGTCGTCTTCGTTTACCTCTCTACCGGCGAGGACCCCGCCGGCGCTCCT
CATCCCGCGACGGACAGATTCGGGGCACGGCGGGGATAGCCCCGTCCTGC
CTCCCCCCGAAAAGGTGCCAAAGCTCGACGACGACGAGGACGGCGACGAC
GACGACAGAGCGGGCGGGTCGGCGGGGGCTGCGGCGGGGGCCGCCGGCGC
CTCCCCGCATTCCGCCGCCGGCGACTTGCTCTCTCTGCCTGGAGCTCCAC
CCGACGATATTTACCACTCGCCTTTCGCGGGTAGTAGCCCGCTGGGCGGT
TTGGGGGGCGCGGCGGCGGGGGTGGCCGGGGGGGGGGGTCAGGGGGATGC
TGGATCGCCGCTTTTGTTTGACGACGCCGGCTCTGGTTTCGGGCACAGGG
GTCCGGCGGATGACGCGACGGGGGGCGCCGGTGCCGCTGGCACCGCCGCT
TTACAGATGCCGCCGTCCGGAATACCCGGGAAGGCGATGGCGTTGTCGTC
ACCTGGGGCCGGCGAAGCAGCAGCGGCAGCAGCTGCGGGGACGGCGCTCG
GGTTATCTGGGTTCGAGGGGTTTCCCGCTTCTCCAGAGCCGGCACCGTTG
ACGGCCGACGAAGAAGCCGGGGCGGGCGGCGGCGTCGGTGAGTTGGGAGC
TTCGGCGGGGGGGCCGAGCTCTCTCTTGGGCCACGACGGCGCGGAAGCGG
ATGATCCCGTCGCCTCCGCCTTGCGAGGCATCGGCGACGACGTCGATCTC
ATCGGGGGGAGTGACGATCCATACGGCGGTGCGTCAGCGGCAGCCTCGCA
CGCCGTTCCGCCGACCGGCGGCGGCGGGGGAGGGGTAATGTTGGGGCTTA
CCACCACCGCGGACCCAACACCGGTAGCACCCGCAGCGTTGGCAGCACAG
GCTGCACCCGCAGCAGTTTCAACGCCGCCGCCAACGGCACCGCCGGCATC
CGCGGTCTTTTCTCCGCCCCCCGCAACAGCAACATCCACGGCGGCAACAC
CGCCGGCGGCGACATCGGCATCCCCAGTTTTGTTTCAGCCAGCGGCGGCA
CCCGCGGCTTCGCCGTTGCCGACGACACCACCGTCGACAACGGCGACCCC
TACGACCCTCGCAGCAGCAGCAGCAGCAGCGGCGGCGGCGGCGGTCGGCG
CGTTCACGGCACCAACAGCCGCTGCGGGTGGAGTGGGACACGAGGCGGCG
CCGGCGCCGGCGCCGGCGTCCCCAGGGGTAGGAGGCGGTAGCAGCGCCGC
TGCGTCGTCGGCCCTCGCTCCCGAGACAGCGGCAGGAGCGGAGGGGGGTC
CGGCGACCGACGCACCGCAAGCCGGCACGGGATTGCGGGAGAGGTTAAGC
ACGGGTCCCCCAGACGCGCTCGCGACGACACCAAGCCCCCTCCCACCCCC
ACCCCCAGCAGCTGCGGGGGCGGCGGCGGCGGCGGCCGGCGGCGACGGGG
CAACTGCGGAGGAAAGCCCCTCGTTGCCGCCGGGGGACTCGTCGAGTGCG
AGTCCGGGCCCGTCGGGGACCTAGTGTGGCGTGCCAAAAGCGGGGGTAGA
CCTAAATAGCTGTGGCCGCCCGAACCTACTGTAGTTCAGGGGCTCCGTGT
ATGTCTCGTGTTAAGCCACTCTGCCCTCTTCTTTTTTTTCCCCCCCCGAC
CGGCCTCGTAGCCCAAACCCCACACCTTTTTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1120:1053..3034+

>mRNA_Ecto-sp13_S_contig1120.1063.1 ID=mRNA_Ecto-sp13_S_contig1120.1063.1|Name=mRNA_Ecto-sp13_S_contig1120.1063.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1764bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1120:1053..3034+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATACCGATCCCGCCGCGCTCCGCCGTCCGGGACCCCACCCCGTCCCC
GCCAATCATCGGCCGCCAGGGGCTCCGCCGCGCGAGACGGTCGATGGGCG
CCAGCGCCGCCGGCGGCGGTGGTTCTTCCTCTGCCGGTGCCGGCGGCGGC
GGGGCGGACGGGGACGAAGAAGACGATAACGATAGCGGGGACAACCGGGG
GGGGGGGCGCGGGGGGGGCGGAGGGGGTATGGGCAGCGGGTCGTCGTCTT
CGTTTACCTCTCTACCGGCGAGGACCCCGCCGGCGCTCCTCATCCCGCGA
CGGACAGATTCGGGGCACGGCGGGGATAGCCCCGTCCTGCCTCCCCCCGA
AAAGGTGCCAAAGCTCGACGACGACGAGGACGGCGACGACGACGACAGAG
CGGGCGGGTCGGCGGGGGCTGCGGCGGGGGCCGCCGGCGCCTCCCCGCAT
TCCGCCGCCGGCGACTTGCTCTCTCTGCCTGGAGCTCCACCCGACGATAT
TTACCACTCGCCTTTCGCGGGTAGTAGCCCGCTGGGCGGTTTGGGGGGCG
CGGCGGCGGGGGTGGCCGGGGGGGGGGGTCAGGGGGATGCTGGATCGCCG
CTTTTGTTTGACGACGCCGGCTCTGGTTTCGGGCACAGGGGTCCGGCGGA
TGACGCGACGGGGGGCGCCGGTGCCGCTGGCACCGCCGCTTTACAGATGC
CGCCGTCCGGAATACCCGGGAAGGCGATGGCGTTGTCGTCACCTGGGGCC
GGCGAAGCAGCAGCGGCAGCAGCTGCGGGGACGGCGCTCGGGTTATCTGG
GTTCGAGGGGTTTCCCGCTTCTCCAGAGCCGGCACCGTTGACGGCCGACG
AAGAAGCCGGGGCGGGCGGCGGCGTCGGTGAGTTGGGAGCTTCGGCGGGG
GGGCCGAGCTCTCTCTTGGGCCACGACGGCGCGGAAGCGGATGATCCCGT
CGCCTCCGCCTTGCGAGGCATCGGCGACGACGTCGATCTCATCGGGGGGA
GTGACGATCCATACGGCGGTGCGTCAGCGGCAGCCTCGCACGCCGTTCCG
CCGACCGGCGGCGGCGGGGGAGGGGTAATGTTGGGGCTTACCACCACCGC
GGACCCAACACCGGTAGCACCCGCAGCGTTGGCAGCACAGGCTGCACCCG
CAGCAGTTTCAACGCCGCCGCCAACGGCACCGCCGGCATCCGCGGTCTTT
TCTCCGCCCCCCGCAACAGCAACATCCACGGCGGCAACACCGCCGGCGGC
GACATCGGCATCCCCAGTTTTGTTTCAGCCAGCGGCGGCACCCGCGGCTT
CGCCGTTGCCGACGACACCACCGTCGACAACGGCGACCCCTACGACCCTC
GCAGCAGCAGCAGCAGCAGCGGCGGCGGCGGCGGTCGGCGCGTTCACGGC
ACCAACAGCCGCTGCGGGTGGAGTGGGACACGAGGCGGCGCCGGCGCCGG
CGCCGGCGTCCCCAGGGGTAGGAGGCGGTAGCAGCGCCGCTGCGTCGTCG
GCCCTCGCTCCCGAGACAGCGGCAGGAGCGGAGGGGGGTCCGGCGACCGA
CGCACCGCAAGCCGGCACGGGATTGCGGGAGAGGTTAAGCACGGGTCCCC
CAGACGCGCTCGCGACGACACCAAGCCCCCTCCCACCCCCACCCCCAGCA
GCTGCGGGGGCGGCGGCGGCGGCGGCCGGCGGCGACGGGGCAACTGCGGA
GGAAAGCCCCTCGTTGCCGCCGGGGGACTCGTCGAGTGCGAGTCCGGGCC
CGTCGGGGACCTAG
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