mRNA_Ecto-sp13_S_contig1119.1050.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1119.1050.1
Unique NamemRNA_Ecto-sp13_S_contig1119.1050.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1119.1050.1 vs. uniprot
Match: D7FRK7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRK7_ECTSI)

HSP 1 Score: 1353 bits (3502), Expect = 0.000e+0
Identity = 794/909 (87.35%), Postives = 814/909 (89.55%), Query Frame = 1 
Query:   64 MIRTTIAGVDSLLHRSAAAATSAARQGASSRGLGDRQ-HASAAVAVCWRGGPTRRHWSSQKEAEEKDSAGDAAVNVGDYAPDATATTEEPAPPKPQRTFVVRTPDSSSSLKVTVPSTTAEAMAMNLSIRENARAKKEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQSRGRPAERRRVPSMMVVTPNARSKSIQMEVPLTTAECIELNRAVKERYPTQQQEADEDNNNNAVNPGYSRRWRNPPAPGVGGGQGAQHAYGAGLSSSPEVVKYADVEQGAREPSYDRTIGNLHKARRWDQIVRVWEEIEEREKGGVTVGLGWATYECLMDAFISHTDLGVVARCGRVFDHLVASGQGIRPAIYNLYMKGCSVARLGTRAVALIEGLDRLPGKRFKPNPQFFFNLLSATCAEGMVAESKLYYGIMRDMGFDPTNNTLQNMLDMYIREDRLVDALRVVEDTHHAGIKPRDALMNKLTYACMRHGDPELMHKTLDLLLLTGNIVNPMTVKNVLYMATRRRDDDMATKMWVAAQQWGHRFSQADYSFVVQTFFAVGKDDMALATLVQAYKEKIEVNRKTLTFCAQRLAVSNKRLDQAYYTLTLLKENGEPVPVEAVNAIIVGCAIRQAVDRCFATAEALPVVFELAPNLDTYNALMHVLGVMRAQDTDNATLGIGMSLLDQIEKEEVKPNQETFMSLIDLACMSDGLTEDFANDLVERMTSKHGLCLEQDIVDTLASAFEERGMDSLAQAWTNKMPSLDAPSDETFDASSPAAXXXXXX-------ADLTCEQGNTSGGVVRARRVAQDRGRYTGFDDGRFKAIRNSTRRGDNQGRDVGRFSYGSAGGDGGEGYSXXXXXXXXARGXXXXTGGATPDPRREERMXXXXXXXXXXXXXXXXWARRYTKSGDE 2766
            MIRTTIAGVDSLLHR AAAATSAARQGASSRGLGDRQ HASAAVA+CWRGGPTRRHWSSQKEAEEKDSAGDAAV+VGDY+PDATATTEEPAPPKPQRTFVVRTPDSSSSLKVTVPSTTAEAMAMNLSIRENARAKK  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   +RGRPAERRRVPSMMVVTPNARSKSIQMEVPLTTAECI+LNRAVKERYPTQQQEADED+NN  VN GYSRRWRNPPAPGVGGGQG  HAYGAGLSS PE+V+YADVEQ AREPSYDRTIGNLHKARRWDQIVRVWEEIEEREK GVTVGLGW TYECLMDAFISH                                 GCSVARLGTRAVALIEGLDRLPGKRFKPNPQFFFNLLSATCAEGMV ESKLYYGIMRDMGF+PTNNTLQNMLDMYIREDRLVDALRVVEDTH AG++PRD LMNKLTYACMR G+PELMHKTLDLLLLTGNIVNPMTVKNVLYMATRRRDDDMATKMWVAAQQWGH FSQADYSFVVQTFFAVGKDDMALATLVQAYKEK+EVNRKTLTFCAQRLAVSNKR+DQAYYTLTLLKENGEPVPVEAVN+IIV CAIRQAVDRCFATAEALPVVFELAPNLDTYNALMHVLG MRAQDTDNATLGIGMSLLDQIEKEEVKPNQETFMSLIDLACMSDGLTEDFA+DLVERMTSKHGL LEQDIVDTLASAFEERGMDSLAQAWTNKMPSLDAPSDETFDASSPA XXXXXX       AD TCEQGN S GVVRARRVAQDRGRYTGFDDGRFKAIR+STRRG+N G  VGRFSYGSAG          XXXXXX   XXXX         REER+XXXXXXXXXXXXXXX WA+RY KSGDE
Sbjct:    1 MIRTTIAGVDSLLHRGAAAATSAARQGASSRGLGDRQQHASAAVAICWRGGPTRRHWSSQKEAEEKDSAGDAAVDVGDYSPDATATTEEPAPPKPQRTFVVRTPDSSSSLKVTVPSTTAEAMAMNLSIRENARAKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---TRGRPAERRRVPSMMVVTPNARSKSIQMEVPLTTAECIKLNRAVKERYPTQQQEADEDSNN-GVNAGYSRRWRNPPAPGVGGGQGLHHAYGAGLSSFPEIVRYADVEQSAREPSYDRTIGNLHKARRWDQIVRVWEEIEEREKRGVTVGLGWTTYECLMDAFISH---------------------------------GCSVARLGTRAVALIEGLDRLPGKRFKPNPQFFFNLLSATCAEGMVGESKLYYGIMRDMGFEPTNNTLQNMLDMYIREDRLVDALRVVEDTHQAGMRPRDPLMNKLTYACMRQGEPELMHKTLDLLLLTGNIVNPMTVKNVLYMATRRRDDDMATKMWVAAQQWGHSFSQADYSFVVQTFFAVGKDDMALATLVQAYKEKVEVNRKTLTFCAQRLAVSNKRVDQAYYTLTLLKENGEPVPVEAVNSIIVACAIRQAVDRCFATAEALPVVFELAPNLDTYNALMHVLGAMRAQDTDNATLGIGMSLLDQIEKEEVKPNQETFMSLIDLACMSDGLTEDFADDLVERMTSKHGLRLEQDIVDTLASAFEERGMDSLAQAWTNKMPSLDAPSDETFDASSPAXXXXXXXXXXXXXXADFTCEQGNGSDGVVRARRVAQDRGRYTGFDDGRFKAIRDSTRRGENPGGGVGRFSYGSAG----------XXXXXXXXXXXXXXXXXXXXSGREERVXXXXXXXXXXXXXXXGWAQRYNKSGDE 862
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1119.1050.1 vs. uniprot
Match: A0A7S2V2T5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2T5_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 7.170e-18
Identity = 61/198 (30.81%), Postives = 104/198 (52.53%), Query Frame = 1 
Query: 1696 VVQTFFAVGKDDMALATLVQAYKEKIEVNRKTLTFCAQRLAVSNKRLDQAYYTLTLLKENGEPVPVEAVNAIIVGCAIRQAVDRCFATAEALPVVFELAPNLDTYNALMHVLGVMRAQDTDNATLGIGMSLLDQIEKEEVKPNQETFMSLIDLACM-SDGLTEDFANDLVERMTSKHGLCLEQDIVDTLASAFEERGM 2286
            V  +F   GKDD A+  L +   +   +  + +   A  L+ S +RLD  YY    +++ G+ VP+ AVNA+I+GC+ + A+DR FAT + L  VF L PN+ +YN+L+     +   D D     + ++LL Q++ + + P+Q T+ +LI   C+ + G +      L E    K G+ L +D    +   F + G+
Sbjct:    7 VAYSFMLKGKDDSAVTVLGELESKGWTITSQQMKSMADLLSTSIRRLDHCYYFCRDMRDRGQVVPLSAVNAVILGCSWKGALDRAFATFDDLEKVFHLVPNVGSYNSLL-----VACCDPDRPQASVALALLRQMKDQGLLPDQHTYHNLI--KCLFAAGKSNQVGKVLAEM--EKDGVRLSKDSYIFMGREFAKLGL 195
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1119.1050.1 vs. uniprot
Match: A0A2K1LA39_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1LA39_PHYPA)

HSP 1 Score: 61.6 bits (148), Expect = 5.910e-6
Identity = 38/135 (28.15%), Postives = 67/135 (49.63%), Query Frame = 1 
Query: 1834 LDQAYYTLTLLKENGEPVPVEAVNAIIVGCAIRQAVDRCFATAEALPVVFELAPNLDTYNALMHVLGVMRAQDTDNATLGIGMSLLDQIEKEEVKPNQETFMSLIDLACMSDGLTEDFANDLVERMTSKHGLCLE 2238
            LD AY+ L  +  +G+PVP+ A+N +I+GCA     DR + T E++   F L P+  + NAL+   G        N      + L + +++  + P+Q +F  +I +  ++  + E  +  L   M + H  C E
Sbjct:  443 LDGAYFKLAEMHASGQPVPIAAINCVILGCANIWDADRAYQTFESISSTFGLRPDSHSINALLEAFG-------KNKKTAEAVKLFEYMKESGIAPDQRSFELMITVHVINRDV-ESASAILTTMMDAGHTPCRE 569
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1119.1050.1 vs. uniprot
Match: A0A8H4ILH5_9PEZI (Protein-tyrosine phosphatase receptor/non-receptor type n=2 Tax=Botryosphaeria dothidea TaxID=55169 RepID=A0A8H4ILH5_9PEZI)

HSP 1 Score: 60.1 bits (144), Expect = 2.300e-5
Identity = 54/211 (25.59%), Postives = 90/211 (42.65%), Query Frame = 1 
Query: 1588 NVLYMATRRRDDDMATKMWVAAQQWGHRFSQADYSFVVQTFFAVGKDDMALATLVQAYKEKIEVNRKTLTFCAQRLAVSNKRLDQAYYTLTLLKENGEPVPVEAVNAIIVGCAIRQAVDRCFATAEALPVVFELAPNLDTYNALMHVLGVMRAQDTDNATLGIGMSLLDQIEKEEVKPNQETFMSLIDLACMSDGLTEDFANDLVERMTSK 2220
            N L  A R  D D++T ++    +     +Q  Y  +V T+  V     AL+ L          +  ++    + +    +R  Q +  L  LKE G  VP+ AVNA+I     R  +D+     +AL  V E  P   T+N L    G  + +D       + M L  ++ +  V+P+  T+  L+ L C+++    D A    E M S+
Sbjct:  369 NALISAARHADADLSTSVFQLLGERKEVLTQQHYEMLVDTYVKVEDMRTALSVLCIMQSSGTPPDEFSMRLLFKWVRNQPERAMQLFGELRSLKEEGNAVPIVAVNALIEAAIYRNDLDQAIDMYKALHTVCESGPTTATFNILFR--GCPKRKD-------LAMFLAAEMVERNVEPDALTYDRLL-LICLNEQDNYDDAFRYYEEMRSR 569
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1119.1050.1 vs. uniprot
Match: A0A8H7PHK6_MORIS (PPR_long domain-containing protein n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7PHK6_MORIS)

HSP 1 Score: 59.3 bits (142), Expect = 2.520e-5
Identity = 62/296 (20.95%), Postives = 116/296 (39.19%), Query Frame = 1 
Query: 1240 KRFKPNPQFFFNLLSATCAEGMVAESKLYYGIMRDMGFDPTNNTLQNMLDMYIREDRLVDALRVVEDTHHAGIKPRDALMNKLTYACMRHGDPELMHKTLD-------LLLLTGNIVNPM-------------------------------TVKNVLYMATRRRDDDMATKMWVAAQQWGHRFSQADYSFVVQTFFAVGKDDMALATLVQAYKEKIEVNRKTLTFCAQRLAVSNKRLDQAYYTLTLLKENGEPVPVEAVNAIIVGCAIRQAVDRCFATAEALPVVFELAPNLDTYN 2013
            +R+ P+ + F  ++ A   EG + E     G+MR+ G  P   +  NML       RL  AL + E     G          +   C    + +L  K L         L +T +I  P+                               T   V+ +A +  + ++A+ M     + G+++ +  ++ +VQ F   G    A + L       I   + T +     +  + +++DQA+Y L  LK+ G+ +   A N ++  C   + + R  +T +    + ++ PN+DTYN
Sbjct:   60 RRYTPSVEIFNVVIKALANEGSITEQVKILGVMREKGVKPDAISYYNMLRNLHDFSRLEQALDIHETALSDGXXXXXXXXXXIIRLCGEVDELDLGWKLLQDADKANLPLNITPSIGLPLLRSAAKLEKVDIVQGIWELIQRKSLSLPDDGTAIMVMNLAGKLGNIELASSMIDCLGKQGYQYQEHHFAPLVQAFVGQGDLKGAFSVLEIMRSCAISATKHTASAIFDSIEGNLEKIDQAFYILEQLKQEGKEIDTIAFNVVLRACVRAKDLHRSISTYQEAAKL-DVQPNIDTYN 354
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1119.1050.1 vs. uniprot
Match: A0A1J9R2D5_9PEZI (Pentatricopeptide repeat protein n=1 Tax=Diplodia corticola TaxID=236234 RepID=A0A1J9R2D5_9PEZI)

HSP 1 Score: 57.8 bits (138), Expect = 8.770e-5
Identity = 56/214 (26.17%), Postives = 91/214 (42.52%), Query Frame = 1 
Query: 1579 TVKNVLYMATRRRDDDMATKMWVAAQQWGHRFSQADYSFVVQTFFAVGKDDMALATLVQAYKEKIEVNRKTLTFCAQRLAVSNKRLDQAYYTLTLLKENGEPVPVEAVNAIIVGCAIRQAVDRCFATAEALPVVFELAPNLDTYNALMHVLGVMRAQDTDNATLGIGMSLLDQIEKEEVKPNQETFMSLIDLACMSDGLTEDFANDLVERMTSK 2220
            T  N+L +A R  D D+AT ++    Q    F+Q  Y  +V T+  V     AL+ L          +  +     +      +R  Q +  L  LK+ G   P+ AVNA+I     R  +D      +AL  V E  P+  T+N L    G  + +D       + M L  ++ + +V+P+  T+  L+ L C+ +    D A    E M S+
Sbjct:  316 TCFNILGVAARVGDGDLATDVFRVLSQRKEVFTQQHYEMLVDTYIQVDDMRTALSVLCIMQASGTPPDDYSTRKLVRWTCAHAERPLQLFEQLLKLKDEGYKAPLAAVNALIEAAVSRDDLDTAIDIYKALHTVCEDGPSTATFNILFR--GCPKRKD-------LAMFLAAEMVERKVEPDALTYDRLL-LICLMEQDKYDDAFRYYEEMRSR 519
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1119.1050.1 vs. uniprot
Match: A0A1S8B461_9PEZI (Pentatricopeptide repeat-containing protein, mitochondrial n=1 Tax=Diplodia seriata TaxID=420778 RepID=A0A1S8B461_9PEZI)

HSP 1 Score: 57.4 bits (137), Expect = 9.490e-5
Identity = 56/211 (26.54%), Postives = 88/211 (41.71%), Query Frame = 1 
Query: 1588 NVLYMATRRRDDDMATKMWVAAQQWGHRFSQADYSFVVQTFFAVGKDDMALATLVQAYKEKIEVNRKTLTFCAQRLAVSNKRLDQAYYTLTLLKENGEPVPVEAVNAIIVGCAIRQAVDRCFATAEALPVVFELAPNLDTYNALMHVLGVMRAQDTDNATLGIGMSLLDQIEKEEVKPNQETFMSLIDLACMSDGLTEDFANDLVERMTSK 2220
            NVL +A R  D D+AT ++    +    F+Q  Y  +V T+   G    AL+ L          +  +     Q       R  Q +  L  LK+ G   P+ AVNA+I     R  +D      +AL  V E  P+  T+N L    G    +D       + M L  ++ + +V+P+  T+  L+ L C+ +    D A    E M S+
Sbjct:  191 NVLGVAARAGDADLATDVFRLLSERKEAFTQQHYELLVDTYIQAGDLRTALSVLCIMQGSGTPPDEYSTRKLVQWTRAHADRAVQLFEQLRKLKDEGFKAPLAAVNALIEAAIGRDDLDTAIDIYKALHTVCEDNPSTATFNILFR--GCSTRKD-------LAMFLAAEMVERKVEPDALTYDRLL-LICLMEQDNYDDAFRYYEEMRSR 391
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1119.1050.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FRK7_ECTSI0.000e+087.35Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2V2T5_9STRA7.170e-1830.81Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A2K1LA39_PHYPA5.910e-628.15Uncharacterized protein n=2 Tax=Physcomitrium pate... [more]
A0A8H4ILH5_9PEZI2.300e-525.59Protein-tyrosine phosphatase receptor/non-receptor... [more]
A0A8H7PHK6_MORIS2.520e-520.95PPR_long domain-containing protein n=1 Tax=Mortier... [more]
A0A1J9R2D5_9PEZI8.770e-526.17Pentatricopeptide repeat protein n=1 Tax=Diplodia ... [more]
A0A1S8B461_9PEZI9.490e-526.54Pentatricopeptide repeat-containing protein, mitoc... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1119contigEcto-sp13_S_contig1119:439..13844 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score1368.6
Seed ortholog evalue0.0
Seed eggNOG ortholog2880.D7FRK7
Model size2772
KEGG rclassRC00037,RC00094
KEGG koko:K16342
KEGG ReactionR01315,R01317,R02053,R07064,R07379,R07387,R07859
KEGG Pathwayko00564,ko00565,ko00590,ko00591,ko00592,ko01100,ko01110,ko04010,ko04014,ko04072,ko04217,ko04270,ko04370,ko04611,ko04664,ko04724,ko04726,ko04730,ko04750,ko04912,ko04913,ko04921,ko05231,map00564,map00565,map00590,map00591,map00592,map01100,map01110,map04010,map04014,map04072,map04217,map04270,map04370,map04611,map04664,map04724,map04726,map04730,map04750,map04912,map04913,map04921,map05231
Hectar predicted targeting categoryother localisation
Exons16
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
Ec32 ortholog descriptionRibosomal protein L10/L12
Ec32 orthologEc-12_002650.1
EC3.1.1.4
Cds size2772
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1119.1050.1prot_Ecto-sp13_S_contig1119.1050.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1119 439..13844 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462582.7412608-CDS-Ecto-sp13_S_contig1119:438..9461681462582.7412608-CDS-Ecto-sp13_S_contig1119:438..946Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1119 439..946 -
1681462582.7625008-CDS-Ecto-sp13_S_contig1119:1459..15421681462582.7625008-CDS-Ecto-sp13_S_contig1119:1459..1542Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1119 1460..1542 -
1681462582.7734838-CDS-Ecto-sp13_S_contig1119:2827..29061681462582.7734838-CDS-Ecto-sp13_S_contig1119:2827..2906Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1119 2828..2906 -
1681462582.7856185-CDS-Ecto-sp13_S_contig1119:3536..35921681462582.7856185-CDS-Ecto-sp13_S_contig1119:3536..3592Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1119 3537..3592 -
1681462582.7967365-CDS-Ecto-sp13_S_contig1119:4115..42301681462582.7967365-CDS-Ecto-sp13_S_contig1119:4115..4230Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1119 4116..4230 -
1681462582.8068395-CDS-Ecto-sp13_S_contig1119:4666..48331681462582.8068395-CDS-Ecto-sp13_S_contig1119:4666..4833Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1119 4667..4833 -
1681462582.8162382-CDS-Ecto-sp13_S_contig1119:5434..55181681462582.8162382-CDS-Ecto-sp13_S_contig1119:5434..5518Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1119 5435..5518 -
1681462582.825646-CDS-Ecto-sp13_S_contig1119:6351..64621681462582.825646-CDS-Ecto-sp13_S_contig1119:6351..6462Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1119 6352..6462 -
1681462582.8358812-CDS-Ecto-sp13_S_contig1119:6780..68961681462582.8358812-CDS-Ecto-sp13_S_contig1119:6780..6896Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1119 6781..6896 -
1681462582.8503208-CDS-Ecto-sp13_S_contig1119:7451..75031681462582.8503208-CDS-Ecto-sp13_S_contig1119:7451..7503Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1119 7452..7503 -
1681462582.8622162-CDS-Ecto-sp13_S_contig1119:8189..83481681462582.8622162-CDS-Ecto-sp13_S_contig1119:8189..8348Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1119 8190..8348 -
1681462582.8716426-CDS-Ecto-sp13_S_contig1119:9118..91901681462582.8716426-CDS-Ecto-sp13_S_contig1119:9118..9190Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1119 9119..9190 -
1681462582.879756-CDS-Ecto-sp13_S_contig1119:9673..97721681462582.879756-CDS-Ecto-sp13_S_contig1119:9673..9772Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1119 9674..9772 -
1681462582.8895779-CDS-Ecto-sp13_S_contig1119:10805..108921681462582.8895779-CDS-Ecto-sp13_S_contig1119:10805..10892Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1119 10806..10892 -
1681462582.9001653-CDS-Ecto-sp13_S_contig1119:12147..128731681462582.9001653-CDS-Ecto-sp13_S_contig1119:12147..12873Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1119 12148..12873 -
1681462582.9141157-CDS-Ecto-sp13_S_contig1119:13586..138441681462582.9141157-CDS-Ecto-sp13_S_contig1119:13586..13844Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1119 13587..13844 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1119.1050.1

>prot_Ecto-sp13_S_contig1119.1050.1 ID=prot_Ecto-sp13_S_contig1119.1050.1|Name=mRNA_Ecto-sp13_S_contig1119.1050.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=924bp
VKHTAVHATFQTKYGRPHPAAMIRTTIAGVDSLLHRSAAAATSAARQGAS
SRGLGDRQHASAAVAVCWRGGPTRRHWSSQKEAEEKDSAGDAAVNVGDYA
PDATATTEEPAPPKPQRTFVVRTPDSSSSLKVTVPSTTAEAMAMNLSIRE
NARAKKEAAARRHAANTAARTSSKQPGGEAAAAAAAMAAAPQSRGRPAER
RRVPSMMVVTPNARSKSIQMEVPLTTAECIELNRAVKERYPTQQQEADED
NNNNAVNPGYSRRWRNPPAPGVGGGQGAQHAYGAGLSSSPEVVKYADVEQ
GAREPSYDRTIGNLHKARRWDQIVRVWEEIEEREKGGVTVGLGWATYECL
MDAFISHTDLGVVARCGRVFDHLVASGQGIRPAIYNLYMKGCSVARLGTR
AVALIEGLDRLPGKRFKPNPQFFFNLLSATCAEGMVAESKLYYGIMRDMG
FDPTNNTLQNMLDMYIREDRLVDALRVVEDTHHAGIKPRDALMNKLTYAC
MRHGDPELMHKTLDLLLLTGNIVNPMTVKNVLYMATRRRDDDMATKMWVA
AQQWGHRFSQADYSFVVQTFFAVGKDDMALATLVQAYKEKIEVNRKTLTF
CAQRLAVSNKRLDQAYYTLTLLKENGEPVPVEAVNAIIVGCAIRQAVDRC
FATAEALPVVFELAPNLDTYNALMHVLGVMRAQDTDNATLGIGMSLLDQI
EKEEVKPNQETFMSLIDLACMSDGLTEDFANDLVERMTSKHGLCLEQDIV
DTLASAFEERGMDSLAQAWTNKMPSLDAPSDETFDASSPAAAAAAAAADL
TCEQGNTSGGVVRARRVAQDRGRYTGFDDGRFKAIRNSTRRGDNQGRDVG
RFSYGSAGGDGGEGYSGGGGAGGLARGGGRGTGGATPDPRREERMGGGRG
SPPSEGGGGGGWARRYTKSGDEY*
back to top

mRNA from alignment at Ecto-sp13_S_contig1119:439..13844-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1119.1050.1 ID=mRNA_Ecto-sp13_S_contig1119.1050.1|Name=mRNA_Ecto-sp13_S_contig1119.1050.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=13406bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1119:439..13844- (Ectocarpus species13 EcNAP12_S_4_19m)
GTAAAGCACACAGCAGTGCACGCCACGTTTCAAACAAAGTACGGGCGTCC
ACACCCCGCTGCCATGATTAGAACCACCATTGCGGGGGTAGATTCTCTGC
TGCATCGTAGTGCTGCCGCTGCCACCAGTGCAGCTCGACAGGGCGCATCG
TCGAGAGGTCTCGGGGATCGTCAACATGCCTCAGCAGCAGTGGCGGTTTG
CTGGCGAGGAGGTCCAACAAGGAGACATTGGTCTAGTCAGAAGGAGGCAG
AGGAAAAGGTGTGTCTGCGTGCTGCAGTGCGCTCTTGCAAGGTCGAAAGA
AATCTGTTTCGGGAACCGATATGGCGGTCCTCCATGGCAATTTTTTATAG
TCAACAACGAGACTGTGTTGCTCGAAGCTGCTGTCATATTTGTTGGTTGT
GGTGCTCTCGGTGGCCAGCTCTATGGGCCTGGTTCTCGTCTGCGCAAGTG
CGAGAGAGCCTTGGCGGACACCTCTCCTTACGGTGATTGTTTGCGAGTTT
TCAGTTTTTGATATTTTTTCAATGGCAAACAGGAGAGAGCAAAGAGACCG
TACTGTCCACGTGCGTAGGTCGTGTCGGTATGTGATCGAAAGTTTGAATA
GTTGCCCTTGTTGATAGCGCAAGATGATCTTTGCTTTCGTACGTCCTGAT
CCGTTGTCTTTTCCGGTGACATGGCAGACGGGCACTCAACGAAACGCGTG
TCTGGCCGGCGCACAAATCGCACGTTGTGCTCTTTGCGCTCCCTGTACGA
GTAGAGGTCGCATACCCAATTACCTTTGCTTCCGTTTTTTCGGGTCCAAC
CTGCTGCTGTTTATGTATGCACTACATGCACTGAGGCCACCGGACCGTCC
CCCTCTCGCGGCACTTCCGTAGTTTCGAACAAGTCCTTGCGATGGCAGAA
AACAAGCCGCCTTCTTCGTATTTCTACGAGAAACGTCCCTAACATGAATG
ACCCCTCCCGCCTGCCACCAGGATAGCGCCGGCGATGCCGCAGTCAACGT
CGGCGACTACGCCCCAGACGCGACTGCAACTACCGAGGAGCCCGCCCCAC
CGAAGCCGCAGCGTACCTTCGTGGTGCGAACGCCCGACTCCTCCTCCTCC
CTCAAGGTCACCGTGCCAAGCACGACCGCCGAGGCGATGGCGATGAACCT
GTCGATCAGGGAGAACGCCAGGGCGAAGAAGGAGGCGGCGGCGCGCCGGC
ATGCGGCCAACACAGCGGCTAGGACGTCGTCGAAGCAGCCGGGAGGTGAA
GCGGCGGCGGCGGCGGCGGCGATGGCGGCCGCCCCCCAAAGCAGAGGCAG
GCCGGCCGAACGGCGGCGGGTACCGAGCATGATGGTGGTGACGCCCAACG
CCCGGTCGAAGTCCATCCAGATGGAGGTGCCCCTCACGACGGCCGAGTGC
ATCGAGCTCAACAGGGCGGTGAAGGAGAGGTATCCGACGCAGCAGCAGGA
AGCCGACGAAGACAACAACAACAATGCGGTCAATCCCGGCTACTCGAGGA
GGTGGCGCAACCCGCCCGCGCCCGGCGTCGGTGGAGGCCAGGGGGCGCAG
CATGCCTACGGGGCAGGCCTGTCTTCTTCCCCCGAGGTCGTGAAGTACGC
GGACGTCGAGCAGGGCGCGCGGGAGCCTAGCTACGACAGAACGATTGGGA
ACCTGCACAAGGCCAGGAGATGGGATCAGATTGTGCGGGTGTGGGAGGTA
AGAGGACGAAATCGCACGACGCGCTTTCGCAACTCTTTCGGCAGAGGGAT
GCGGGTCGCAAGTACGTTTAGCGCGCGGCTTGTGCTTCGGGGCGATGAAA
CAGCAGCCAAGGGAGCGATGAACCAGCGTTGGGCTTCCTTCCCCTTTGTG
GGGAATACCGCATCGCCGTTGTAGTATGTGCGCGACCCAGGCCTTGGAAA
GACGCATCAACCAAGTAGAAATGCATAGAGGTGGCTATTTTCGAAGACAA
ACACGCGTGGAGACGTTATCGCACACCCCGGCCCCCCGCTCGCGCGATTC
CATGTAGCGAGCAATTGTTTTATGCTTGGATGAGTATGGCAACCCAAAAC
GGCGTCTGAGGAGCGGATACATGAACAAACAATCACAACTTCAGCACACC
CTTAACACACGGGTGTACCAAAACGTAGTAACCGACCGCCAAAATGTTCT
GGAAAAAGGACTGTGCAACGTCTCGCAAGCGCGGCGTCACATTATGCGGA
CGAGCGCACGTTGAGTCCACGCACGCGCACGCGCTTTTCACGGCCCTCCC
GGCCACCACCATCACGATCTGACCGAGTGCACCGCCATGCCGCTATCAGC
AAGAATGCTGTGGTATCTACGAGCTAGTTGCTTGCGCGGAGAGGGTTGCA
AGGAGTCAGGGGAGCGACGTTTGCTCGAAGTCTGGTGTTGCAACCAAGCC
GACGAAAGCTGCGGCAGGGCCGGAGGACGTTGTGGGCGCTATGACGAGTT
TATAGGCGTGCCGTCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCGG
CCGCCCCCTCCCCCTCCCCGCCCTCTTTCTAGTCTTTCTTCTTTTTTCCT
CTTCTATCACCTTAAAACAAANNNNNNNNNNTCAAACAAAGCGAAAAAAG
GCGGGGGGGGGGCGGGGGGAGGTTGGGGGGCCTATGGGGGTTTTTAGGGG
GGCCCCCCCCCCCCCCCCCCCCCCCGCCAGCAAGTTTGGTGCTCCCCCCT
CGTTCCGGTGGTATTGTTCTTATCTCGCTTCGTTCACATTCAACGTAAGC
ACTCAATGATGATGCCGAATGCACACTCGTACAACAGCCCGTTGCTTAGA
TGCTGTTTGCTGTTTGTTGCGCTCATTTTTCCTGTCTTTTTGCCAAGAGG
GTAACATCATACGCGTCCCACACACGGAAACTCATGTGTCATTTTCGTCT
GCCGTTTTTCGCGCCCTCTGGCCCTGGCGGTGTTTTTTGTGTGCCCTCAC
AGGAAATCGAGGAGAGGGAGAAGGGAGGGGTAACGGTTGGTCTTGGATGG
GCCACGTACGAGTGCTTGATGGACGCCTTCATTTCCCACGTGAGCTCAGC
TAGATGTAGCTGCTGTTCGTGGAAATGCTGTGCACACATTTCCTACGCAG
GGGCGACGGAGAGGGGGTGGCAGGGGGGCTATCTTCCCTGCGGCTTTCCA
GCAACAACAAAACAACCTAAATATAACAATATTCGTCTTGGGCGTCTATC
GAAAAGGCGTTTTTACGGCGTGCCTGAGGTTGTTCAGAAGTGTGATCGCT
CGTATCGATTGGCACAGGTAGCACCGTTCCTATCTAGCACCATTCCTATC
TTAGAGGAAGACGTGCGTTTTATATGCTTTCTCGTGATTGGCAAGGCGTT
CCGGGGGCATCTGTGCGTGGTTGCTGCAATCATCACGTTAGAATTGAAGG
GGATGGCCACCTCAGACCATATTTGAATACCAACCCGGGGTGCGTGGGAA
GGTGGTCGGGCCCCTGGATTAGCTCGAAAATAAGATGATAACGTCCTCCG
TTCGGAGCAGATCTCCGAAACGGTCTATCTGTACGTGCACCATCGATGAC
ATTGATGGCACATTGTCGTCGAACGACAGTCTTGCTTGGGAAACACTGAG
ACACCGCCATGGAACGAGTAGTCTCCCCCTCGGAGTTGACCCGGTGTTTG
TTTTTTTTTGTTTTTTTGTGTTTGTTGGTGATGCCGCATGGCCGCACCGT
CATCGACAATATCAGCGCTATCCTACCGCTTTTTCACGCCAAACTTGCTT
CGTCCGTTCTCGCCGGCTCCGTAGGCGTATTGCCTCGAGCTAGATCTTGT
CCCGACACGAAAAAGCGTTCGAGTCTTGCTGGCGTCTGTTACGGGCGAGG
CCGGGCGCGCCGTATGTTCTGCGCTCTTCTTGTGCTGCCTTACCCTGCCG
TCGTGCCGCATTCTGCTTGCTGTGTCTTTCGCGTTCGCTACTATGTATTG
CTGCTGAGGCTAGTTTCTCGATCTTCTTTCTCCCCTTCCCTTGTCAACAC
AAGCGTCTCTGTCTCTCTCTCTGCCTCTCTCCCGCCCCCCCCACTCTTCG
GGGCGTTCGCGGACAAGAACAGACGGACCTGGGGGTAGTGGCCAGGTGCG
GGCGCGTGTTCGATCACCTGGTCGCCAGCGGACAGGGCATACGGCCAGCG
ATATACAACCTGTACATGAAGGTGATGTACAACAGTTCGAGAGCACCAAG
GCAGTACTTCGGCGAAAAAGCTGCCACAGAAGACGCTGCCCGCGAGGCTA
GGATGGGCCCGTGGTGAATATCGCGCTTGTTCGTACAAAATCGCCGCAAG
AGCGGGGTGTTTCTACGAGTGTCGTGAATGGTTCACACTGGTGGTACATC
GTGATACTTTTTCGCTCTTCCAACGTGTTGGCGTCGCCACGCCCGGCTTG
TTTGTGTGATACCGCCCACACTTGCTCTCTTTGAGTCCTTGTGTATATCT
CCCGCTCTGTCTCCCCCCCCATCTCTCTCCCCCCACCTCTGTCCTTCCTG
TCTCCTTCTCTCTCTCTTTCCTTCTCTCCCTCTCTCTCCCCTCTCTCCTT
CCTGTCCCTCTCCCCATCCCTCCCTCCGGGCCCACCGCGTCCTCAATCTT
ACTCGTGTTTTGCTTGTGGCTTCGCTCTCCGAAAACCCTCGATTCGATTG
GCAGGGATGCAGCGTGGCCAGGCTCGGGACCCGTGCGGTGGCGTTAATCG
AGGGGCTTGATCGCTTGCCGGGGAAGGTGAGGCACGGGCTGACTGATGTG
CTGGGGCGTGTCTCGTGTCTTCGGAGCTTGCTGGAACTACGTGACTGTGA
ACCCCATACTATGGTGTACCTTTTAGAGACAGACGAACTCACAGAAAGGG
AGAGAGAGAGAGAGAGACGGAGGTACAGAGACAAGATGAGAGAGTTAACC
AGGGTCTGGTTGATTTGGAGCGAGAAGAACAAGCCTTGGATTTTGTGCGT
GCGCGTTCGTTTGGCTATCTTTGGTTGGTTCTTTACCTTCCGCGATCTTG
CCACTTAGTACTTCGTATTTATTTTTTTAGACTCGCTTGTTACTCCTTCC
CCTTTTGCCCCGCGCTCTCCTGTTGGTATTGTGCTGGATTGTGCTCTCCT
CTGTGCTCCTCTCCATTCTCTTCACCTTACATCTTGGCTCTGCTTCACAC
TCATTTTTGACGTCGTCTAGTGTTTCTTCTCAGTGCAACGTGTATGGATA
GTGATGTTATTTATTGGGTTTCCATCCCTTTTACTTCACAATACTTCTCC
CATGTTTTGGCATATTTTCTCAAGCTGAGAGGAGAGGTAAGTAAAAGGGC
CCGGAAAAAATAAATGCCACATGAGGCGGTAACTAGTGCAAGCAGTCAAG
TCTTCCTATTTTTTTTGCTACTCCTCCCCTTGTTGACCCATGACTTGACT
GCTGTGCTTCACGCTCGATTTTAACCCTGCAGTTTATCCCCCATCCACTC
CGTTGCCCCCCGTACAACCGCTCCCGAACGCTGCCGCCCCGAGCAGAGGT
TCAAGCCGAACCCGCAGTTTTTCTTCAATCTACTGTCGGCGACTTGCGCA
GAAGGCATGGTGGCGGAGAGCAAGCTCTACTACGGGATCATGAGGGATAT
GGGCTTCGACCCGACCAACAACACCTTGCAAAATATGCTGGACATGTACA
TTCGGGTGAGTCTCGGTATGATAGTTGGCGGGAGGGAGGAGTGGTGCATT
TGTCTCGCCTCTGTATTGTAGTGTGGATGGGAACAGGTTAGGACGGGGAG
GGGGGGGATACAGTCCACGGGGTGCCACCGTTTCATGCCTCCTGTACAGT
GTAGCATTTTTCATGCCTTCCAAGCCCACTTGCGGGTAGCGCTTGCACTT
GCGTGCCCGCGTGTATCAATAATTATTTAGTAGGTAGCATCGACCGTGCT
CATCGGGTTGTTGGCCTTGATGGCGGCTGTCTCGGTTGTAGCGCCGGCCA
CGCGTGGTGTCTTCCGCGTACGAATTGACGCACACCGATACTAGCGGGGA
ACGGGAGGGGAGGGGAGTAAAATTGCTCGCCTGGTTTGTGGTCTGTGACG
CGTTGCTTACAACGGTGGCCGCTGTACATCACGCTGCCACCTTCCTGTCA
CGCGGGAGTCGGCAGTAGCACCACTGATCGTCGGCTCCGAACGCCTGTTT
CGTCTGACGTGCTTGCCTTTTTTGTTGCATACTCGGGGTTTGTGTTTTTG
CTTGCGTGTGCATCGTGCGAATTGCATTGAGTGACGAATGGACAACTACA
TAGCCATGCACAAGTATTCCAACATGTTGAAAGAAAACGAGACCCCAACA
ACGAGAACGATGACGACCACCACGGCGACCGAAACATACAGGAGGATAGG
CTGGTGGACGCGCTGAGGGTGGTCGAAGACACCCACCATGCCGGTAAGGT
TTCGGTTTCATGCAGCATCTTGTCGGGGGTTTGCAATCATTCACAAGGTT
ATATTCTTGGCGTTCTCTTCGTAAAATTTCTCCCGCCTTGGTACAGCAGG
CATGCGGCGTGCGGTGCGCGTATGCCCCGACCTCATCTTCTCGCTTCTGC
TGTCCATGTCGTGGTCGTTTTTTTTGCGTTGTGTATGTTGTTGTGCGTTT
TGGGTGGGCATGTGTTGTCCCCCCTCCTCTTGCCTCCCTCACGTTGTCGA
TGGTGCTTGAGACCTTTCTCCCGTCTTGTTCCAACATGCAAACGTGGCGT
GCACCTGTCTTTTTTCTTCTTTCGGGGGGGGTGCGGGGAAGGCACTCTCC
TGATTGTGTTCCCTGTTGAGGCTATTGCCGACTCTCGCCGCGGGAGGGAG
AGGGGATGGGGGGTCTTATATCGGCACACGCCTCTTGGTGAGAGGTATGC
CAAGCGTAAGGGGTGCATCAGCACCAGCGTCTGTTGACGTTGAAAATCTC
CGCGTCGCTGATTCGTGATATTTCAATCCCGACCCGCACCTTCGGAAGGG
ATTAAGCCGAGGGATGCCCTAATGAACAAGCTGACGTACGCGTGCATGCG
GCACGGGGATCCGGAGCTGATGCACAAGACGCTCGACCTCCTTCTGCTAA
CCGGCAACATCGTGGTGAGGAGGAGAGGAGGAGCTTGTACAGGGGCATGA
TCCGATCCCTCGTGGCACACACACGGAAGCTTTTACCTTAAAACACAGTT
TTCCTAAGCATGATATTTTCGAAGCAAGAGGCGTTGGACCTCTCCCTGAT
GGTTGACATTGTTTTGTGGAGTTTATGTGGTCGTCACATCTCTTCTGACG
TCAGTCTACTCGCCTCTTTTTGTACCTTCGCTTGGCCATTGCTGCTGGAC
ACACCCACCCTACTGTGCTCTCTTTGTTTCGTCTCCATAATGTTTCTCTC
TTGCCTGGTGTGCGGCTATTTATATCAATCAGAACCCGATGACCGTGAAG
AATGTCTTGTACATGGCCACCCGCCGGAGGGATGACGACATGGCGACCAA
GATGTGGGTCGCCGCACAACAATGGGGTCACAGGTTTTCCCAGGTAACAA
GTGCACTACTGTACAAGAGACCGTTGCAATTTTTTCGACACATGCTTCTC
TATCCTTCTTGAAAGTTTTTGTTCTGATGTAAATGTCGATACCCCACCCA
CCCCCCCTCTACCTACTCCTTCGCCGAGCCTTGTATGTGCGGTTCTGCGC
ACCTGGTGCTGACTACTATCGTCTTGAGGTTGTGGGCGGCCTCCTCTCCT
GCTGTTAAAGGTCTAGTCAATGCTGTGGTCGGGATACCATTCGGCCAAAG
TTTGAGTCATAGCAAAGTTACAGGTGCTCGTTCTCACGTGGAACACGCCG
GAAAATCTCAAGCTCCGCCAAACATTTTTCGGAAGGCTGCTGCTGTTTAG
AAGTAGTTCCCAGGCGAATCGGAGATTCCAGCAAAAGCTTGCTCTTGCAA
GTGTCCGCCCGATCGTTTTTTCTCCAATCTATGATGGAGGAAAGAGAGGA
GCTACTGTATCCCCTCCCTCCACTAGACTGCCCTGGAAGTCAACAACCGG
TTGCGCCCCGTTTTCGGAAAGAGCACGTGGCCCGTTTATTCGCGGTTGTA
GCCTTGAAGGACAACAAATCTCGACGATCGCTTTTGAAGTGGTGCTTCAT
ACATGGGATGAACCGCTTTCATGCGGTGACTCCCCCTCAATAAAATTCCC
CAGCGGCTCTTGTCCTCCTTGGTTTTTCTTTATTCTGTCCTCGCCGTACA
TTCGTCTATTTTCGTTTGTTCGTTTCGTTTTGACCTAATGTGGGTATTTC
GACCTCTGTCGCCGTTAGTTTTATCTCTTCTGGTTATATTTGTTCCACCC
AATGTCGTGTGTGTCCCCGCCCCCAGGCCGATTACTCCTTCGTGGTGCAG
ACCTTCTTTGCGGTGGGGAAGGACGACATGGCTCTCGCCACTCTCGTGCA
AGCCTACAAGGTCAGTGGGCAAGGGCAAAGGGTGGCAACGAAAAAAGAGT
CAAAGGAAACGGTGACACGACGACGCTGTCTGTGAATTAATTGCTCTCCA
TTTTTTATTCTTTTTTTACCTACCGTCCGTGGATCGAAATTTCAGCATTG
CTTAGTTTTTGCAAGAACACAAGAAAGAACCAAGAACAAGACAGCCGTTG
CTAGACCCAGGAGCACCACAAGAAGGGCGTTCTTGTTGATGTATTTTTCG
CGGAAGCATGAAGACGAAGACTTGTGTAGGCGGGGGGGGTTCATGTTATC
CCTTCAGCCGTCGAGTTCAAACAGGCTGGGTGGCGTCAATTTGTCGGTGG
TTGGCTTTGCCCCGTTTTCTTGGTAGTTGCAATCTGTGCCTCGCCTGCTA
TGACACGCGTGGGCAGTTGCCAAGCTATCGCGGCAAACGACTACGAGTAG
CCCCCCAACCTCACTTCATTCTCACGCCACAAAAAAAAACCGTTGTGCGC
TCTCTCCTTCCCTCCCTCCCTCCCACCCCCCCTCCCTTCCCTTCTCCCCC
CCATCCCCCTCTCTGTCTCTCCGTCTCTTGCTCTTTCGTCAATTTGCTGC
CGAATCGCCAGGAAAAGATCGAGGTGAACCGCAAGACCCTGACGTTCTGC
GCGCAAAGGCTGGCAGTGTCGAACAAGCGGCTAGACCAAGCGTACTACAC
GCTCACGCTGCTCAAGGAAAACGGAGAGCCGGTTCCGGTGGAAGCCGTCA
ACGCCATCATCGTCGGATGCGCCATAAGGTGCTCGCAGTCGTGTGCTTGT
TGGGATTTGTGTGTGTGTTTGTTGTTTGCCTCAACCGCACTGGCCGGGTG
ACCAATGAAAATACGTCAGTGCCAGCGGGTAAAAACAATACCCCTGGAAG
GAGGCCAACAATAACGTTCGAAACCTAAGCAGTGCACTAAATGCAAATGC
CAACGTGAGTCTCCACATACTGATTTGTGCGTCCCTGAAGTTGTCTGCTG
ATGTTTGCGTACATATGCAAGCATGGTCAATTGTCATGCAAGGGCATGAC
TCGCCGTTCTGTTGGGTGAATAGCGCAATCATCCGGAGGCCATCAACAAC
AAACACAACCGCGGGGGCAACAACCGCGCAAACCAGCACCGACAGCAATG
AACACGTGAAGATGAAATCTTGTTTGTGCCGTTTGTGCTGCTGCTGCTGC
TGCTGTCATTTCAGGCAAGCAGTAGACCGATGTTTTGCGACGGCCGAAGC
TCTCCCCGTGGTGTTCGAGCTAGCACCCAACCTCGACACGTACAACGCGC
TGATGCACGTCCTCGGCGTGATGAGAGCGGTGCGACTCGGTTTTGAGCCT
AAACGGAGGGGTGACACGCCGCAGCAGCTTGGATGTTTTGCTGCCATCGG
GTCGATTTATTTTTCGGTGGTAGAGCCTCTCTCCTTCGACTTGGAGCCCG
CGTGGAATGCGTCCGTGTGTCGTGCCCCGCGTGGTTGTCCGACATTTTTT
GCGCACGAGCTTTCCGTTGTCCTGTTGTCCATGCTTCGCACGCACGCTCG
CCGTGGAATCTACGCTCCGCCATGATGGGGTTTTACTTAACGGCAGATTG
TTGTGCTTAAAATACATGGCTAAATCAACCTCCACGGTACACTCTACTAA
GTTGTGTGGTATCTCCTGTTTTCCATTGAATGCTCTCCTTCCACCCCGAC
CCGTCGCTATTTCGCTGACTCGTCTGCTGCCCTCCCCCCCACCCCCCACC
CCCTGAACGCGTGCTGGCGGTTGATGTGCTACCATACGTGTTGGTGTGAC
GTCGCTGGTGCTGCCCCGCGCGCCCATGCCCTTGGTTGGACGCGTTCTTC
AGCAAGACACGGACAACGCCACGCTCGGCATCGGCATGTCTCTCCTCGAC
CAAATCGAGTGAGTCGGCTAGCTGTCTACCGCCGCTGGAGATTTCGCTTT
CAGACCACTGCTCACGTTGTTGTCCATGCATGTGCACACCATGTACAGTA
TTGCGTTTGTAACCCGGTAGTTACATGCGACAGACACTGGACTCATGTTT
CTTCGGTGGTTTTTGTTTTTAGGGGGATGGGCGCGTCCTAGATGCTGGTG
GTGGTCTCGCTATCCGTTGTTAGTGGAAGAGCATCGGAGGAGAGCAGTAA
CTGTAAGATAGTTAGCGGAGGGAGGTTCGTTGTTTTGAGTTGCTGTGTTT
GGTGAGGGCAAGTTGAGACTGAGACGTTTTTTGCTCGCCATACGTCCCGA
AGTTGCGTGGCCATCTTCAAACTATGAGTTAGTATTTGCGTCCGGCTCGA
GTGAGTCAGTTCGCATGCCTTGTTTCGTGCCCCACATCATCCGGTGAAAG
GCTGACAGGCAACAACGTCAATTCAGCTGGCCTCAGGAATTCCCAGACAT
AGTTCTTCACGTTCCGCACGGAACGAGGCCCGTTGTTGTCTGTCGCTGTT
TTTTGTACGGCAAAATCCGCTCAGTATTAAACCAACCCTCACGGCTTGTT
GCCCCCTCCTCCCCCCCGCCTCTTCGCGCGTTTCCTAGGAAGGAGGAGGT
GAAACCGAACCAGGAGACATTCATGAGCCTGATAGATCTGGCGTGCATGT
CCGACGGACTCACCGAGGTATGTACGCATACACGACTGCTGTACGTGCGT
TGTTTTGATTCCAAAGAAAAAATAATCAAGGGCTGAGGTTATCTGTCGTG
TGTAGTGTCCCATCGCCGCCCTTCGTTGGTTCACCCACGCGCACAGCGTG
TTACGTTTCTCATCACCATTTTTTTGTACGGCCCTATGCCGTTGGAGCCA
ATTGGTCGATCAACCGTAACAAATCGCATATATTTTGAAGGGTTGGAGAG
GTAATTTTTGACATATCATTCTTGGTAAATTCGGGGACAGCTCGATGTTT
TAACCCCCTTACTACGCGCAGAAAATTCGGCGTTCTTGCGAAATTTCTGA
AAAAGCACGAACGACGCCTGCTGATTGGATGGTGCAGACAGTTTCATCCC
CGGGTGCAAGTTCAAAGCTGCCTTCCCACTTGCGCCGTCTTTGGTCTTCA
ATCCCTATCAAGTGTCCCCCCGATTATCGACGGGACATTTTATAGGGATT
ACAGACAGCAACTGGCAGGAGCGTGGTAAACGGGGTACGAAAAAGGAGTT
TTCAAGATATTTCTCTAGAGGGAAATCGAGACCTTCTAACCCAAGCCCTA
GGTTGCCCGGTGCCTCCTTTCAACGGTGGGCTAGGTGCTTCTTCCGCGCT
TGCCCCAAGGGTAGACAGACGCGGCGCAACTTGGCTGTTGAACCCGCGGC
GTAATCGCCCGCGATTTGACCTGTTCATTACCCTCATACTCCTCCACTCT
ACAAAGCATCCATACTAGACTATAGTCGTCCCCGTGTACCCTGGCACCCC
CCTGGTCGAGTAGTTCAAAGGAAGAGACAATCATGCCATTCTTCGCGAGG
TTAAGCAGGTGAAGGAGGTGGGGACAAAAAGTGTCCCCAAAAGGCGATCT
AGCCCTACAGGGGTTAAGGCAGGACTGTTCAGTTCGCACACCCAAGTTGT
CATAATCTCCGGAGACGTTAGTCCTATCAAAAGCGCTCACTTGATGCGCC
CTGCGTAAAGATTGCATGTTGTGGTTGTATCATACCCGTGTCGTCTGTGA
CCTTGTTACATCATATGCACCCCGTGGACGGATCTCTGCTGCCAACCCTC
TCCCTTGGAGATGGAGAAAGCAATGCTTGGGGCTGGGCTCCCCGCACGCT
TCACTCGGACCCGCCGCCGCCGTTGCCGGGCGTCGTCAGTGCCGCGTACC
CCTGCCCGATGTCGTCTACGCTTCTTTCGCTGATGGTTGCTCCTCGCAAC
TTCTTGCTATTTATTGCTTTGTATTTCACCTGTTCTGCTCTTCCTCGTTC
AGGACTTCGCCAATGACCTCGTGGAGAGGATGACTAGCAAGCACGGCCTC
TGTCTCGAGCAGGACATCGTCGACACACTTGCAAGGTCTGTCCGTCCATC
CCCACAGGAACCCCACGACCCCCCCCCCCCCCCAACGTAACTCGTGTGTA
AGACTTTTGGTCTGTCTTCAACTCCCGTAGTGCGCACCCGCGCGAGAAAC
AACCAACCACATGTTTTGGTCATCGAGGGGAATGGGCATTCACGTCGTAT
GAAAGGCCACTCAATCCTTTTCTTTCCCCCCACAGATTGTCGACCCCGGG
GGTGAGGATGAGCCTTGCGAACAATTCGGGCGGATGACAAGAGACGAAAG
ATGATACTTTCTTCGAGTTTCCACGCGGCAGTTTGGGCATGTTGGCGCAC
CGCAAAGAGCCAGAAGTAGATAGGAAGGTTACATGCTTGTTCGCAGGGCA
AAAAAAGCGTTTGCCCCGCGCGTGCGTCCCTTTGCAGCTCTCCTCTTCAC
TTGACCATCGTTTCTCATGTCCGCTTGAGGTAGCCTGTCCTCAACCACCC
CCTTGACGCGCGACGCGGCCTCGAAATGAAATCAAACCAAAACGACAGCG
CTTTCGAGGAGAGAGGCATGGACAGCCTAGCGCAAGCGTGGACGAACAAG
ATGCCGTCCCTTGACGCCCCCTCCGATGAGACCTTCGACGCAAGCTCCCC
GGCGGCGGCCGCGGCAGCCGCGGCCGCCGACTTGACTTGTGAACAGGGGA
ACACCAGCGGCGGAGTGGTCCGAGCGCGCAGAGTGGCGCAAGACAGAGGC
CGGTACACGGGTTTCGACGACGGGCGGTTTAAGGCTATCCGGAATTCCAC
CCGCCGCGGGGATAATCAGGGGAGAGACGTGGGAAGGTTCTCGTATGGGT
CCGCCGGCGGCGATGGCGGCGAAGGGTATTCAGGAGGTGGTGGAGCTGGG
GGTTTGGCTAGAGGAGGAGGGAGGGGTACCGGTGGTGCTACGCCGGATCC
TAGGAGAGAGGAGAGGATGGGGGGTGGGAGGGGTTCCCCGCCGTCTGAAG
GCGGTGGCGGCGGAGGTTGGGCTCGAAGATATACCAAGTCTGGAGACGAA
TATTAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1119:439..13844-

>mRNA_Ecto-sp13_S_contig1119.1050.1 ID=mRNA_Ecto-sp13_S_contig1119.1050.1|Name=mRNA_Ecto-sp13_S_contig1119.1050.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2772bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1119:439..13844- (Ectocarpus species13 EcNAP12_S_4_19m)
GTAAAGCACACAGCAGTGCACGCCACGTTTCAAACAAAGTACGGGCGTCC
ACACCCCGCTGCCATGATTAGAACCACCATTGCGGGGGTAGATTCTCTGC
TGCATCGTAGTGCTGCCGCTGCCACCAGTGCAGCTCGACAGGGCGCATCG
TCGAGAGGTCTCGGGGATCGTCAACATGCCTCAGCAGCAGTGGCGGTTTG
CTGGCGAGGAGGTCCAACAAGGAGACATTGGTCTAGTCAGAAGGAGGCAG
AGGAAAAGGATAGCGCCGGCGATGCCGCAGTCAACGTCGGCGACTACGCC
CCAGACGCGACTGCAACTACCGAGGAGCCCGCCCCACCGAAGCCGCAGCG
TACCTTCGTGGTGCGAACGCCCGACTCCTCCTCCTCCCTCAAGGTCACCG
TGCCAAGCACGACCGCCGAGGCGATGGCGATGAACCTGTCGATCAGGGAG
AACGCCAGGGCGAAGAAGGAGGCGGCGGCGCGCCGGCATGCGGCCAACAC
AGCGGCTAGGACGTCGTCGAAGCAGCCGGGAGGTGAAGCGGCGGCGGCGG
CGGCGGCGATGGCGGCCGCCCCCCAAAGCAGAGGCAGGCCGGCCGAACGG
CGGCGGGTACCGAGCATGATGGTGGTGACGCCCAACGCCCGGTCGAAGTC
CATCCAGATGGAGGTGCCCCTCACGACGGCCGAGTGCATCGAGCTCAACA
GGGCGGTGAAGGAGAGGTATCCGACGCAGCAGCAGGAAGCCGACGAAGAC
AACAACAACAATGCGGTCAATCCCGGCTACTCGAGGAGGTGGCGCAACCC
GCCCGCGCCCGGCGTCGGTGGAGGCCAGGGGGCGCAGCATGCCTACGGGG
CAGGCCTGTCTTCTTCCCCCGAGGTCGTGAAGTACGCGGACGTCGAGCAG
GGCGCGCGGGAGCCTAGCTACGACAGAACGATTGGGAACCTGCACAAGGC
CAGGAGATGGGATCAGATTGTGCGGGTGTGGGAGGAAATCGAGGAGAGGG
AGAAGGGAGGGGTAACGGTTGGTCTTGGATGGGCCACGTACGAGTGCTTG
ATGGACGCCTTCATTTCCCACACGGACCTGGGGGTAGTGGCCAGGTGCGG
GCGCGTGTTCGATCACCTGGTCGCCAGCGGACAGGGCATACGGCCAGCGA
TATACAACCTGTACATGAAGGGATGCAGCGTGGCCAGGCTCGGGACCCGT
GCGGTGGCGTTAATCGAGGGGCTTGATCGCTTGCCGGGGAAGAGGTTCAA
GCCGAACCCGCAGTTTTTCTTCAATCTACTGTCGGCGACTTGCGCAGAAG
GCATGGTGGCGGAGAGCAAGCTCTACTACGGGATCATGAGGGATATGGGC
TTCGACCCGACCAACAACACCTTGCAAAATATGCTGGACATGTACATTCG
GGAGGATAGGCTGGTGGACGCGCTGAGGGTGGTCGAAGACACCCACCATG
CCGGGATTAAGCCGAGGGATGCCCTAATGAACAAGCTGACGTACGCGTGC
ATGCGGCACGGGGATCCGGAGCTGATGCACAAGACGCTCGACCTCCTTCT
GCTAACCGGCAACATCGTGAACCCGATGACCGTGAAGAATGTCTTGTACA
TGGCCACCCGCCGGAGGGATGACGACATGGCGACCAAGATGTGGGTCGCC
GCACAACAATGGGGTCACAGGTTTTCCCAGGCCGATTACTCCTTCGTGGT
GCAGACCTTCTTTGCGGTGGGGAAGGACGACATGGCTCTCGCCACTCTCG
TGCAAGCCTACAAGGAAAAGATCGAGGTGAACCGCAAGACCCTGACGTTC
TGCGCGCAAAGGCTGGCAGTGTCGAACAAGCGGCTAGACCAAGCGTACTA
CACGCTCACGCTGCTCAAGGAAAACGGAGAGCCGGTTCCGGTGGAAGCCG
TCAACGCCATCATCGTCGGATGCGCCATAAGGCAAGCAGTAGACCGATGT
TTTGCGACGGCCGAAGCTCTCCCCGTGGTGTTCGAGCTAGCACCCAACCT
CGACACGTACAACGCGCTGATGCACGTCCTCGGCGTGATGAGAGCGCAAG
ACACGGACAACGCCACGCTCGGCATCGGCATGTCTCTCCTCGACCAAATC
GAGAAGGAGGAGGTGAAACCGAACCAGGAGACATTCATGAGCCTGATAGA
TCTGGCGTGCATGTCCGACGGACTCACCGAGGACTTCGCCAATGACCTCG
TGGAGAGGATGACTAGCAAGCACGGCCTCTGTCTCGAGCAGGACATCGTC
GACACACTTGCAAGCGCTTTCGAGGAGAGAGGCATGGACAGCCTAGCGCA
AGCGTGGACGAACAAGATGCCGTCCCTTGACGCCCCCTCCGATGAGACCT
TCGACGCAAGCTCCCCGGCGGCGGCCGCGGCAGCCGCGGCCGCCGACTTG
ACTTGTGAACAGGGGAACACCAGCGGCGGAGTGGTCCGAGCGCGCAGAGT
GGCGCAAGACAGAGGCCGGTACACGGGTTTCGACGACGGGCGGTTTAAGG
CTATCCGGAATTCCACCCGCCGCGGGGATAATCAGGGGAGAGACGTGGGA
AGGTTCTCGTATGGGTCCGCCGGCGGCGATGGCGGCGAAGGGTATTCAGG
AGGTGGTGGAGCTGGGGGTTTGGCTAGAGGAGGAGGGAGGGGTACCGGTG
GTGCTACGCCGGATCCTAGGAGAGAGGAGAGGATGGGGGGTGGGAGGGGT
TCCCCGCCGTCTGAAGGCGGTGGCGGCGGAGGTTGGGCTCGAAGATATAC
CAAGTCTGGAGACGAATATTAG
back to top