mRNA_Ecto-sp13_S_contig11185.1046.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig11185.1046.1
Unique Name	mRNA_Ecto-sp13_S_contig11185.1046.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig11185.1046.1 vs. uniprot
Match: D8LMY2_ECTSI (CSN8_PSD8_EIF3K domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMY2_ECTSI)

HSP 1 Score: 208 bits (529), Expect = 1.740e-61
Identity = 104/115 (90.43%), Postives = 106/115 (92.17%), Query Frame = 3

Query:    3 DMSLAHAGLRDREWSAPLAPYVALVETRVRERQLAIIPKAFTVLPLESVAGMLACSVEDAEKACLKEGWEVDTTAEKTVKPSTKAFPDDTIPAATPDCLQKMANHIAFLERQSQG 347
            DMS A A LRDREWSAPLAPYVAL+ETRVRERQLAIIPKAFTVLPLESVAGMLACSVEDAEKACLKEGWEVD TAEK VKPS +  PDDTIPAATPD LQKMANHIAFLERQSQG
Sbjct:   99 DMSFAQAALRDREWSAPLAPYVALIETRVRERQLAIIPKAFTVLPLESVAGMLACSVEDAEKACLKEGWEVDATAEKAVKPSVRLIPDDTIPAATPDYLQKMANHIAFLERQSQG 213

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BLAST of mRNA_Ecto-sp13_S_contig11185.1046.1 vs. uniprot
Match: A0A146M5C6_LYGHE (COP9 signalosome complex subunit 8 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A146M5C6_LYGHE)

HSP 1 Score: 53.9 bits (128), Expect = 6.670e-5
Identity = 30/105 (28.57%), Postives = 53/105 (50.48%), Query Frame = 3

Query:   18 HAGLRDREWSAPLAPYVALVETRVRERQLAIIPKAFTVLPLESVAGMLACSVEDAEKACLKEGWEVDTTAEKTVKPSTKAFPDDTIPAATPDCLQKMANHIAFLE 332
            +  L   +WS  +AP +A +  +VRER L ++ +A+T + L++++ +L  S  +A    L   W V+      +KP     P      +T   LQ + N ++FLE
Sbjct:   74 YTALNSTQWSDDVAPIMAALVDKVRERCLGLVSQAYTSVTLDTLSKLLGVSPSEAGTIALSNSWTVEDKLAYPIKPQ----PQQKQLTSTEQQLQILTNFVSFLE 174

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BLAST of mRNA_Ecto-sp13_S_contig11185.1046.1 vs. uniprot
Match: A0A0A9W9W4_LYGHE (COP9 signalosome complex subunit 8 n=2 Tax=Mirini TaxID=236659 RepID=A0A0A9W9W4_LYGHE)

HSP 1 Score: 53.9 bits (128), Expect = 7.700e-5
Identity = 30/105 (28.57%), Postives = 53/105 (50.48%), Query Frame = 3

Query:   18 HAGLRDREWSAPLAPYVALVETRVRERQLAIIPKAFTVLPLESVAGMLACSVEDAEKACLKEGWEVDTTAEKTVKPSTKAFPDDTIPAATPDCLQKMANHIAFLE 332
            +  L   +WS  +AP +A +  +VRER L ++ +A+T + L++++ +L  S  +A    L   W V+      +KP     P      +T   LQ + N ++FLE
Sbjct:   83 YTALNSTQWSDDVAPIMAALVDKVRERCLGLVSQAYTSVTLDTLSKLLGVSPSEAGTIALSNSWTVEDKLAYPIKPQ----PQQKQLTSTEQQLQILTNFVSFLE 183

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BLAST of mRNA_Ecto-sp13_S_contig11185.1046.1 vs. uniprot
Match: A0A507BUJ9_9FUNG (CSN8_PSD8_EIF3K domain-containing protein n=1 Tax=Synchytrium microbalum TaxID=1806994 RepID=A0A507BUJ9_9FUNG)

HSP 1 Score: 54.3 bits (129), Expect = 9.800e-5
Identity = 34/106 (32.08%), Postives = 54/106 (50.94%), Query Frame = 3

Query:   42 WSAPLAPYVALVETRVRERQLAIIPKAFTVLPLESVAGMLACSVEDAEKACLKEGWEVDTTAEKTVKPSTKAFPDDTIPAAT-----PDCLQKMA---NHIAFLER 335
            +S  L P +  ++ R+RER   +I KA+T +PL ++A  L  S++D    C + GW +D T     +P     P     AAT      D L++MA   +++  LER
Sbjct:  121 YSTDLRPLIEELKKRIRERVFVLITKAYTDVPLSTIANSLGLSLDDTRAVCTQAGWMIDATTGIATRPPA---PPTLAAAATGGIVGADGLKRMATISDYVVNLER 223

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig11185.1046.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig11185.1046.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4


Match Name	E-value	Identity	Description
D8LMY2_ECTSI	1.740e-61	90.43	CSN8_PSD8_EIF3K domain-containing protein n=2 Tax=...	[more]
A0A146M5C6_LYGHE	6.670e-5	28.57	COP9 signalosome complex subunit 8 (Fragment) n=1 ...	[more]
A0A0A9W9W4_LYGHE	7.700e-5	28.57	COP9 signalosome complex subunit 8 n=2 Tax=Mirini ...	[more]
A0A507BUJ9_9FUNG	9.800e-5	32.08	CSN8_PSD8_EIF3K domain-containing protein n=1 Tax=...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig11185	contig	Ecto-sp13_S_contig11185:2402..4974 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	1
Start	1
Seed ortholog score	207.2
Seed ortholog evalue	4e-51
Seed eggNOG ortholog	2880.D8LMY2
Preferred name	COPS8
Model size	1360
KEGG ko	ko:K08244,ko:K10655,ko:K12181
Hectar predicted targeting category	other localisation
GOs	GO:0000003,GO:0000338,GO:0000715,GO:0001101,GO:0001654,GO:0001745,GO:0001932,GO:0001934,GO:0002009,GO:0002165,GO:0003006,GO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006464,GO:0006508,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0006974,GO:0006996,GO:0007154,GO:0007165,GO:0007250,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007399,GO:0007423,GO:0007444,GO:0007472,GO:0007476,GO:0007552,GO:0007560,GO:0008150,GO:0008152,GO:0008180,GO:0008233,GO:0008237,GO:0008285,GO:0009314,GO:0009416,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009653,GO:0009719,GO:0009725,GO:0009753,GO:0009791,GO:0009886,GO:0009887,GO:0009888,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010387,GO:0010562,GO:0010604,GO:0010646,GO:0010647,GO:0016043,GO:0016787,GO:0019220,GO:0019222,GO:0019538,GO:0019953,GO:0022008,GO:0022412,GO:0022414,GO:0022607,GO:0023051,GO:0023052,GO:0023056,GO:0030154,GO:0030162,GO:0030182,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0031647,GO:0031974,GO:0031981,GO:0032147,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033554,GO:0033674,GO:0034622,GO:0034641,GO:0035107,GO:0035114,GO:0035120,GO:0035220,GO:0035239,GO:0035295,GO:0035556,GO:0036211,GO:0038061,GO:0042127,GO:0042221,GO:0042325,GO:0042327,GO:0042461,GO:0042742,GO:0043085,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043549,GO:0043687,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045859,GO:0045860,GO:0045937,GO:0046483,GO:0046530,GO:0048468,GO:0048471,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048563,GO:0048569,GO:0048583,GO:0048584,GO:0048592,GO:0048609,GO:0048666,GO:0048699,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048749,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050821,GO:0050896,GO:0051171,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051276,GO:0051338,GO:0051347,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0060429,GO:0060562,GO:0060625,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070011,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090596,GO:0098542,GO:0140096,GO:1901222,GO:1901224,GO:1901360,GO:1901564,GO:1901700,GO:1902531,GO:1902533,GO:1903320
Exons	2
EggNOG free text desc.	COP9 signalosome assembly
EggNOG OGs	KOG4414@1,KOG4414@2759
Ec32 ortholog description	COP9 signalosome, subunit CSN8
Ec32 ortholog	Ec-02_004100.1
EC	2.3.2.27,2.7.9.4
Cds size	345
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko01000,ko04121

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462582.4611516-UTR-Ecto-sp13_S_contig11185:2401..3411	1681462582.4611516-UTR-Ecto-sp13_S_contig11185:2401..3411	Ectocarpus species13 EcNAP12_S_4_19m	UTR	Ecto-sp13_S_contig11185 2402..3411 -
1681462582.4883153-UTR-Ecto-sp13_S_contig11185:4969..4974	1681462582.4883153-UTR-Ecto-sp13_S_contig11185:4969..4974	Ectocarpus species13 EcNAP12_S_4_19m	UTR	Ecto-sp13_S_contig11185 4970..4974 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462582.4719317-CDS-Ecto-sp13_S_contig11185:3411..3572	1681462582.4719317-CDS-Ecto-sp13_S_contig11185:3411..3572	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig11185 3412..3572 -
1681462582.4803045-CDS-Ecto-sp13_S_contig11185:4785..4969	1681462582.4803045-CDS-Ecto-sp13_S_contig11185:4785..4969	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig11185 4786..4969 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig11185.1046.1	prot_Ecto-sp13_S_contig11185.1046.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig11185 3412..4969 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig11185:2402..4974-
coding sequence from alignment at Ecto-sp13_S_contig11185:2402..4974-

protein sequence of mRNA_Ecto-sp13_S_contig11185.1046.1

>prot_Ecto-sp13_S_contig11185.1046.1 ID=prot_Ecto-sp13_S_contig11185.1046.1|Name=mRNA_Ecto-sp13_S_contig11185.1046.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=115bp
MSLAHAGLRDREWSAPLAPYVALVETRVRERQLAIIPKAFTVLPLESVAG
MLACSVEDAEKACLKEGWEVDTTAEKTVKPSTKAFPDDTIPAATPDCLQK
MANHIAFLERQSQG*

mRNA from alignment at Ecto-sp13_S_contig11185:2402..4974-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig11185.1046.1 ID=mRNA_Ecto-sp13_S_contig11185.1046.1|Name=mRNA_Ecto-sp13_S_contig11185.1046.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2573bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11185:2402..4974- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGACATGAGCCTTGCCCACGCCGGCTTGAGGGATCGGGAGTGGAGCGCT
CCCCTGGCCCCTTACGTGGCTCTCGTAGAGACCCGAGTCAGGGAGAGGCA
GCTCGCCATCATCCCCAAGGCCTTCACGGTGCTCCCGCTGGAGAGCGTGG
CGGGCATGTTGGCCTGCAGCGTGGAGGACGCAGAGAAAGGTAAGGAAGAT
GACCGATTCGTCATGGCCGATTGGTTCTCATGAGAGTGGATCGTTTTCTA
TTACGAGTCCATCCGCCGGCCTGCCGCGCGGAGCGTGGATTGGGGTGGGT
TGGATCACGTCCGTCACGGTTGCGGCAGTTTGGTGCAACTAGACATCTCT
TGGGCGTGAAACACGTTTGAAGCGTTGTTGGAGGAGTTATTTTACGACGA
TGCGTGTGTGAGAACAAGTTGACACCATGCACCCACACGTTGATCTTGAC
GAGATGCAGCGATTCGGTCACGCGTGCATGCTATTTTGTCACGTGTTTAC
GAAGATCGGCTTTTTGTTGTTGTAGCTCGGCCTCTCGGGAGAGACCTCCA
TGTGGCGCACCCACCGGGCGAAAGGGTGCACATGGCAGACGATAATTCCA
GGCTCCACTTAGACTTTTTTTTTCTTTTTCCTTCGGTCGAGCTGTCCAAC
TCGTGTCGTTTGCACCGTTGCTGGATTGTGCGTATCTCCTTTTTTTTTTA
TCGCGGGGACGGCAGTTTGACGAGTGTGTGTGTTGTCCGAAGCAATGTTT
TGAAAAGGCTGGGGTGACTGACGAGTCCAGCACAAGGGGGCGATTTTCCT
GAGCGAGGGAGTTCGACATGATATGAAATGCAGGCGGCGGTGCTTTCAGC
AGCGGGAGGGATCAATATTTCGGCGTGACTCGGTTGTGTTTCGAAGGGTC
GAAGGGAATGCACGGGTGCAGGCGCGAGCGACATAAGGGGAACCTCTGGA
AGAACATGAGACGTTTATTGACGTCCCCACGCCGACGCTGTTTGGAACGC
CTTGCCTTTCGCCTCGTCTCGACGAAACTTAACTCAAAACATATATACTT
TCCAACCTCTTAAAACAACGCACACACACTAGAAAGCCGCCCTCCTTCCA
CCAAGCACCGAGGACCTTCCTCATGGCGATTCGCGCTTGCTTTTGGTACA
AGGGCCGGCCTTTGATGTCCACAACCCGACTTGCTCCTCCTGCGTCAGGG
GTTACGCGGTCAGGAAGTAAATCTGTTTGGGCCTGGATTACACTCAAATG
GCAACGAGCATCCCCCCAACCGCCCGACACGTCGCTCCGTTGTATATAGT
CCTGTAGGGATACGAGGTTTATGGTCTACCGACTACGCCGTGCGTTTACA
TGAGTACACCCCCTCGCACACTTTCCAACTTGTTTTGATTCTCAACCCGC
AGCCTGCCTCAAGGAAGGGTGGGAGGTTGATACTACCGCCGAGAAGACGG
TCAAGCCCTCGACAAAGGCTTTCCCCGACGACACCATCCCTGCCGCAACG
CCGGACTGCCTGCAGAAGATGGCCAACCACATCGCATTCCTCGAACGGCA
AAGCCAAGGTTGATACTGATGTTGGGGGCGAGCTAGAGGGTAGATAGCGA
GCGTATTTTTTTGGGTGGGGGGCAAAGATAGTTCGGGACAGGGTGACCAG
GTTGATTGTGATGGTAGATGGTTGTGATAGTGTTCGTGTTGAAGCTTGGG
GGGGGGTGATGGTCGTCTTGGTTGTCATTTTGGGTTTTATTTATAGGGCC
TGTTGCTTGTCCCGGCTGTGTGAGGTTTTGGCAACGTTTGTCTCGGTGAC
ATGGATGGCACGAGGAACCGAGCGACGAAGTCAAATGAGATGATGATGAT
ACACGACGATGCGAATCGATTGAAGGCGACTTGAGGGGGGCTAGCTTGTC
AAGAGGCACGGTGGAATTGTGTGCTTATGGCATCGGGTGAAGGGGGAGGT
GGCACAACAGTAGCAGTTTCACCAAGATGCCTGGATGAGTCAATGGTCGA
GCTCTGGTAGGAACTGTAACAACCTCTACCCTTGTTCGGTACTGTTTTGT
CCAGGTCTCGGAGTTTTTTTCCTCTACTGTGCATTCCGTTTCCCTTCGTT
TTCGCGGCGGCCTCGGTGTTCGTAGTCTGTGTGCATGTCCTGGCGTAGGT
GTGATGATTTTCTGTAGAGTGGGTCTGGCGATGTCGAATGTAGTTTTTCT
TTTGTCGGAGCTGTTATGGGGGACGCCATGGCACTTGTTACGGACATGCT
CGTGAGACTGCTCGGTGCACATGTTGCCGGTGCCCATACTATCCCGAAAG
GCTCTCTTAGGGCATAGAACGAATACTGGTAGCTTGCATGTTTGCACCTA
TTGTGCCCATGAAGCGGGCGAGGAGAGTCGTATTATAGTTGCCGCGTATC
GTACGATGTTAAGTGTGTTTCCTGTAGCAGTAATTGGTCGTATTTCATGT
TATCGGTTTTTTTTTGAGCGCGAGTCCTGCAATCTTGTACAAAACCAAAC
GCGCGCGTGAGAGGACGACCCATACCCACGAGATGGGGTATGATGAGCGA
GCCACGAGGGCAAACCCACGTCA

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11185:2402..4974-

>mRNA_Ecto-sp13_S_contig11185.1046.1 ID=mRNA_Ecto-sp13_S_contig11185.1046.1|Name=mRNA_Ecto-sp13_S_contig11185.1046.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=345bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11185:2402..4974- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCCTTGCCCACGCCGGCTTGAGGGATCGGGAGTGGAGCGCTCCCCT
GGCCCCTTACGTGGCTCTCGTAGAGACCCGAGTCAGGGAGAGGCAGCTCG
CCATCATCCCCAAGGCCTTCACGGTGCTCCCGCTGGAGAGCGTGGCGGGC
ATGTTGGCCTGCAGCGTGGAGGACGCAGAGAAAGCCTGCCTCAAGGAAGG
GTGGGAGGTTGATACTACCGCCGAGAAGACGGTCAAGCCCTCGACAAAGG
CTTTCCCCGACGACACCATCCCTGCCGCAACGCCGGACTGCCTGCAGAAG
ATGGCCAACCACATCGCATTCCTCGAACGGCAAAGCCAAGGTTGA