mRNA_Ecto-sp13_S_contig11182.1042.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11182.1042.1
Unique NamemRNA_Ecto-sp13_S_contig11182.1042.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11182.1042.1 vs. uniprot
Match: D7FKN7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKN7_ECTSI)

HSP 1 Score: 182 bits (462), Expect = 1.850e-57
Identity = 103/116 (88.79%), Postives = 104/116 (89.66%), Query Frame = 1 
Query:    1 MSLSPSSIRAVLKSAGQRAGDVSELERPARSEEIESAVATADGGEGPVSVGLPTGSSRENRSPATRGRSRTPRRGLSVGRGLIPNFL--PREPKPQPHGRSSGSAYGHRQGQWYGC 342
            MSLSPSSIRAVLKSAGQRAG V ELERPAR EEIESAVATADGGEG VSVGLP GSSRENRSPATRGRSRTPRRGLSVGR L+PNFL   REPKPQPHGRSSGS  GHRQGQ YGC
Sbjct:    1 MSLSPSSIRAVLKSAGQRAGGVPELERPARPEEIESAVATADGGEGLVSVGLPAGSSRENRSPATRGRSRTPRRGLSVGRDLMPNFLRAAREPKPQPHGRSSGSVGGHRQGQRYGC 116
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BLAST of mRNA_Ecto-sp13_S_contig11182.1042.1 vs. uniprot
Match: A0A6H5JG62_9PHAE (IPPc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG62_9PHAE)

HSP 1 Score: 142 bits (357), Expect = 8.890e-37
Identity = 84/91 (92.31%), Postives = 84/91 (92.31%), Query Frame = 1 
Query:    1 MSLSPSSIRAVLKSAGQRAGDVSELERPARSEEIESAVATADGGEGPVSVGLPTGSSRENRSPATRGRSRTPRRGLSVGRGLIPNFLPREP 273
            MSLSPSSIRAV KSAGQRAG VSELERPARSEEIESAVATADG EG VSVGLPTGSSRENRSPATRGRSRT RRGLSVGRGLI NFL REP
Sbjct:    1 MSLSPSSIRAVFKSAGQRAGGVSELERPARSEEIESAVATADGEEGLVSVGLPTGSSRENRSPATRGRSRTSRRGLSVGRGLISNFL-REP 90
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11182.1042.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FKN7_ECTSI1.850e-5788.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JG62_9PHAE8.890e-3792.31IPPc domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11182contigEcto-sp13_S_contig11182:282..1057 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size360
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-09_000910.1
Cds size360
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462582.2275312-CDS-Ecto-sp13_S_contig11182:281..5431681462582.2275312-CDS-Ecto-sp13_S_contig11182:281..543Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11182 282..543 +
1681462582.2365148-CDS-Ecto-sp13_S_contig11182:959..10571681462582.2365148-CDS-Ecto-sp13_S_contig11182:959..1057Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11182 960..1057 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11182.1042.1prot_Ecto-sp13_S_contig11182.1042.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11182 282..1057 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11182.1042.1

>prot_Ecto-sp13_S_contig11182.1042.1 ID=prot_Ecto-sp13_S_contig11182.1042.1|Name=mRNA_Ecto-sp13_S_contig11182.1042.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=120bp
MSLSPSSIRAVLKSAGQRAGDVSELERPARSEEIESAVATADGGEGPVSV
GLPTGSSRENRSPATRGRSRTPRRGLSVGRGLIPNFLPREPKPQPHGRSS
GSAYGHRQGQWYGCEGNRR*
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mRNA from alignment at Ecto-sp13_S_contig11182:282..1057+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11182.1042.1 ID=mRNA_Ecto-sp13_S_contig11182.1042.1|Name=mRNA_Ecto-sp13_S_contig11182.1042.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=776bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11182:282..1057+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCTTGAGCCCAAGCTCCATCCGTGCGGTTCTCAAGTCAGCTGGTCA
ACGCGCGGGAGATGTATCTGAACTGGAGCGACCGGCGAGGTCGGAAGAAA
TCGAATCGGCTGTCGCTACAGCTGATGGTGGGGAGGGCCCCGTCTCGGTA
GGTTTGCCAACAGGATCGTCTCGCGAAAACCGGTCGCCGGCGACGCGAGG
CCGGTCGAGGACGCCTCGGCGTGGCCTGAGCGTCGGCAGAGGCCTCATAC
CAAACTTCCTCCGTGAGCCATCGACCAAGATGAATCCCGCCGGAGCAACC
AAGGAAGTCGAACAGGGAACGCCCACTGGGATGGCGGACGGCCAGCCACC
GAGCCCCGCCGTTGTTGCACGCCCTGATTCAGGTGTGAAGCCACAACAGC
GGCAAGGAGCAGGGGCAGCGGTAGCAACTCGGAGTCAATCTCAACTCTCT
TCCCCACCACCTACGACATTGCGACGGCGCGTGAGCCTAAGCCTGAACCC
TAGCAACTTGAAGAGGGCTGTGGGTCTCGGATCCGTCCAAGAGAGCACGA
AGAAGAGCGACGCCAACAACAGGAGTTCAGACGCACCCGAGCACGAACAG
GAGTTCGTTGGCGTCTCAGAACAGCAAGCGCCGCCCATGAGAGTCCACCC
TCGTCCTCGCGCTGTCGCCAATGCGCAGCGAGGGAGCCCAAGCCTCAACC
CCACGGCCGCTCGAGCGGCAGTGCCTACGGCCATCGCCAAGGACAATGGT
ACGGCTGCGAGGGAAATCGGAGGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11182:282..1057+

>mRNA_Ecto-sp13_S_contig11182.1042.1 ID=mRNA_Ecto-sp13_S_contig11182.1042.1|Name=mRNA_Ecto-sp13_S_contig11182.1042.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=360bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11182:282..1057+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCTTGAGCCCAAGCTCCATCCGTGCGGTTCTCAAGTCAGCTGGTCA
ACGCGCGGGAGATGTATCTGAACTGGAGCGACCGGCGAGGTCGGAAGAAA
TCGAATCGGCTGTCGCTACAGCTGATGGTGGGGAGGGCCCCGTCTCGGTA
GGTTTGCCAACAGGATCGTCTCGCGAAAACCGGTCGCCGGCGACGCGAGG
CCGGTCGAGGACGCCTCGGCGTGGCCTGAGCGTCGGCAGAGGCCTCATAC
CAAACTTCCTCCCGAGGGAGCCCAAGCCTCAACCCCACGGCCGCTCGAGC
GGCAGTGCCTACGGCCATCGCCAAGGACAATGGTACGGCTGCGAGGGAAA
TCGGAGGTAG
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