mRNA_Ecto-sp13_S_contig11178.1034.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11178.1034.1
Unique NamemRNA_Ecto-sp13_S_contig11178.1034.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11178.1034.1 vs. uniprot
Match: D8LG60_ECTSI (Histone deactylase of possible bacterial origin with ankyrin repeats at the N-terminus n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG60_ECTSI)

HSP 1 Score: 141 bits (355), Expect = 4.840e-37
Identity = 74/77 (96.10%), Postives = 74/77 (96.10%), Query Frame = 1 
Query:   40 ADGERLPPVSREFAEQMSPSALQAIKQISKLRDAQYLSGRGRDKPSASDEEQEPVLPMGPTPELAPAAGDYESSDVG 270
            ADGERLPPVSREFAEQMSPSALQAIKQISKLRDAQYLSGRGRDKPS SDEEQEPVLPMGPTPELAPAAG YESSD G
Sbjct:  418 ADGERLPPVSREFAEQMSPSALQAIKQISKLRDAQYLSGRGRDKPSTSDEEQEPVLPMGPTPELAPAAGGYESSDGG 494
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11178.1034.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LG60_ECTSI4.840e-3796.10Histone deactylase of possible bacterial origin wi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11178contigEcto-sp13_S_contig11178:528..1918 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score146.4
Seed ortholog evalue6.6e-33
Seed eggNOG ortholog2880.D8LG60
Model size272
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.NAD-dependent histone deacetylase activity (H3-K14 specific)
EggNOG OGsCOG0123@1,COG0666@1,KOG0724@1,KOG0724@2759,KOG1343@2759,KOG4177@2759
Cds size270
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462581.633991-CDS-Ecto-sp13_S_contig11178:528..6691681462581.633991-CDS-Ecto-sp13_S_contig11178:528..669Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11178 529..669 -
1681462581.6455488-CDS-Ecto-sp13_S_contig11178:1789..19181681462581.6455488-CDS-Ecto-sp13_S_contig11178:1789..1918Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11178 1790..1918 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11178.1034.1prot_Ecto-sp13_S_contig11178.1034.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11178 529..1918 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11178.1034.1

>prot_Ecto-sp13_S_contig11178.1034.1 ID=prot_Ecto-sp13_S_contig11178.1034.1|Name=mRNA_Ecto-sp13_S_contig11178.1034.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=90bp
ASGAAGASPAAAPADGERLPPVSREFAEQMSPSALQAIKQISKLRDAQYL
SGRGRDKPSASDEEQEPVLPMGPTPELAPAAGDYESSDVG
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mRNA from alignment at Ecto-sp13_S_contig11178:528..1918-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11178.1034.1 ID=mRNA_Ecto-sp13_S_contig11178.1034.1|Name=mRNA_Ecto-sp13_S_contig11178.1034.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1391bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11178:528..1918- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGTCGGGAGCGGCGGGAGCTAGCCCGGCGGCGGCACCTGCCGACGGGGA
GCGCCTGCCGCCAGTTTCCAGGGAATTTGCTGAGCAGATGTCGCCCTCGG
CGCTGCAGGCCATCAAGCAGATTTCAAAGGTAAGTTTCTTTTATGTGCTG
AGCGCGCAATATCGTGTGTATCGAAGTGTAGAAAACGACACTGGACGTGC
GGTGTTGTAGCCGTTTCTACAGCAGTTGGTAAGTCCAGTGCAAGTGGGAC
ACATTTTTTTTCCAGAGGATATCTTGATTTACATGTAGATCTATTCTTCG
GTCTTCTGTGTCACTGCTTTTTTTTTTTATTACGAGAAAGCGTTCAGATT
CCTGTCCGTTTTTCCTCGTCGGCCGTAAAGTGGAAGTCGGGTGCACCCAC
GAAGCAATCGTTCGCCACCCGATACCGCAGCAGGCATAATGTGTTTACGA
ACATAACAGCAGCCAGTTCTTTTCGTGCGACTACGCCGAGATTCGAAGTC
GTCACTGCTCATCTGGCAAGTTGAGGTTGCGGGCTGTTTCTACCAAAAAC
CGAGGGGGAGGAACTTTTCTCAAAATTTTATCCTCGCATCCACCTCGTGC
AGCAGCAGCACGTGTGCATGTATATGTATCTCAAGTGCATCCCTGTCAAC
CTACAGTAGAGTAGCTGAAAAGTCGTGGTTGAATCCAAAGGATTTGTTGT
CGACGATATTCGGTAGTAGCCATTTCTACTTCTCGCTCAACATCACCAAT
GTATGCACAGATCTTCGAACCCCTAGAAGTAGTCCATATATATCGCCAAG
ACCCCCCCCCATCCCTGCTGGGCGATGGATCAGATGGCAGGCATGACGTG
CAGAAAAGGAGGATAGAAACGGCGCGCGAATTCCAGTGTGATATGTTGTT
ACACATGATTACATCCAACTCTTTTGGCAGGGCACAAAAAAAGCACGACC
CGACCACGTGCTTGGTATGTCTCTGATCGATGTATGCGTGGTCAACCGAC
TCTCACGGCAATCGACGCACGTGACGTGCAGAAAAGGAGGATAGAAACGG
CGCGCGAATTCCAGTGTGATATGTTGTTACACATGATTGCATCCAACTCT
TTTGGCAGGGCACAAAAAAAGCACGACCCGACCACGTGCTTGGTATGTCT
CTGATCGATGTATGCGTGGTCAACCGATTCTCACGGCAATCAACGCACGT
GAGCAACCCCCCCTCCCCCGCCGTGTTTGTCCCCGTCCCCTGCCAACAGC
TGCGGGATGCCCAGTACCTCTCCGGCAGGGGTCGCGACAAGCCATCCGCG
AGCGATGAGGAGCAAGAGCCGGTGCTACCCATGGGGCCAACGCCAGAGCT
GGCCCCTGCGGCGGGGGACTACGAGAGCTCCGACGTGGGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11178:528..1918-

>mRNA_Ecto-sp13_S_contig11178.1034.1 ID=mRNA_Ecto-sp13_S_contig11178.1034.1|Name=mRNA_Ecto-sp13_S_contig11178.1034.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=270bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11178:528..1918- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGTCGGGAGCGGCGGGAGCTAGCCCGGCGGCGGCACCTGCCGACGGGGA
GCGCCTGCCGCCAGTTTCCAGGGAATTTGCTGAGCAGATGTCGCCCTCGG
CGCTGCAGGCCATCAAGCAGATTTCAAAGCTGCGGGATGCCCAGTACCTC
TCCGGCAGGGGTCGCGACAAGCCATCCGCGAGCGATGAGGAGCAAGAGCC
GGTGCTACCCATGGGGCCAACGCCAGAGCTGGCCCCTGCGGCGGGGGACT
ACGAGAGCTCCGACGTGGGG
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