mRNA_Ecto-sp13_S_contig11173.1032.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig11173.1032.1 vs. uniprot
Match: D8LN05_ECTSI (PHD-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN05_ECTSI) HSP 1 Score: 375 bits (963), Expect = 4.930e-123 Identity = 198/201 (98.51%), Postives = 199/201 (99.00%), Query Frame = 1
Query: 1 EQLVNELGGAGAVAEMTGRKGRMVKKPDGEVVYEKRNANGISMTMQNVFEKECFMSGQKLVAIISEAASAGISLQADRRAKNQKPRVHITMELPWSADKAVQQLGRSHRSNQSSAPSYKLLLSSVGGERRFASAVSSRLESLGALTQGDRRSAGAHGLGLSAFNMDTKYGRLALEKVLLAAIRRIQPEVVFPALPEGEATK 603
+QLVNELGGAG VAEMTGRKGRMVKKPDGEVVYEKRNANGISMTMQNVFEKECFMSGQKLVAIISEAASAGISLQADRRAKNQKPRVHITMELPWSADKAVQQLGRSHRSNQSSAPSYKLLLSSVGGERRFASAVSSRLESLGALTQGDRRSAGAHGLGLSAFNMDTKYGRLALEKVLLAAIRRIQPEVVFPALPEGE TK
Sbjct: 120 DQLVNELGGAGVVAEMTGRKGRMVKKPDGEVVYEKRNANGISMTMQNVFEKECFMSGQKLVAIISEAASAGISLQADRRAKNQKPRVHITMELPWSADKAVQQLGRSHRSNQSSAPSYKLLLSSVGGERRFASAVSSRLESLGALTQGDRRSAGAHGLGLSAFNMDTKYGRLALEKVLLAAIRRIQPEVVFPALPEGEDTK 320
BLAST of mRNA_Ecto-sp13_S_contig11173.1032.1 vs. uniprot
Match: A0A6H5KWU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWU5_9PHAE) HSP 1 Score: 273 bits (697), Expect = 4.770e-81 Identity = 146/147 (99.32%), Postives = 146/147 (99.32%), Query Frame = 1
Query: 163 MSGQKLVAIISEAASAGISLQADRRAKNQKPRVHITMELPWSADKAVQQLGRSHRSNQSSAPSYKLLLSSVGGERRFASAVSSRLESLGALTQGDRRSAGAHGLGLSAFNMDTKYGRLALEKVLLAAIRRIQPEVVFPALPEGEATK 603
MSGQKLVAIISEAASAGISLQADRRAKNQKPRVHITMELPWSADKAVQQLGRSHRSNQSSAPSYKLLLSSVGGERRFASAVSSRLESLGALTQGDRRSAGAHGLGLSAFNMDTKYGRLALEKVLLAAIRRIQPEVVFPALPEGE TK
Sbjct: 1 MSGQKLVAIISEAASAGISLQADRRAKNQKPRVHITMELPWSADKAVQQLGRSHRSNQSSAPSYKLLLSSVGGERRFASAVSSRLESLGALTQGDRRSAGAHGLGLSAFNMDTKYGRLALEKVLLAAIRRIQPEVVFPALPEGEDTK 147
BLAST of mRNA_Ecto-sp13_S_contig11173.1032.1 vs. uniprot
Match: A0A7S3JZA5_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JZA5_9STRA) HSP 1 Score: 243 bits (620), Expect = 1.130e-70 Identity = 138/211 (65.40%), Postives = 160/211 (75.83%), Query Frame = 1
Query: 1 EQLVNELGGAGAVAEMTGRKGRMVKKPD-GEVVYEKRNA-NGISMTMQNVFEKECFMSGQKLVAIISEAASAGISLQADRRAKNQKPRVHITMELPWSADKAVQQLGRSHRSNQSSAPSYKLLLSSVGGERRFASAVSSRLESLGALTQGDRRSA-GAHGLGLSAFNMDTKYGRLALEKVLLAAIRRIQPEVVFPALPEGEATKVRNTVQR 624
+ L++ LGG+ VAEMTGRK RMV+ P G+V E RN NG+S+ MQN+ EK CF +G+K VAIISEAASAGISLQADRR NQK RVHIT+ELPWSADKA+QQLGRSHRSNQSSAP YK L+SSVGGERRFASAV+ RLESLGALTQGDRR+ GA GLGL+AFN DTK+GR AL K + P ALP E T + V++
Sbjct: 817 DTLIDALGGSENVAEMTGRKNRMVRDPKTGKVRQEVRNEKNGVSLEMQNMHEKRCFQNGEKCVAIISEAASAGISLQADRRVPNQKRRVHITLELPWSADKAIQQLGRSHRSNQSSAPEYKFLISSVGGERRFASAVARRLESLGALTQGDRRATVGAKGLGLTAFNFDTKWGRQALSKYFGIINKVNNPPYTLSALPISERTALVEKVEQ 1027
BLAST of mRNA_Ecto-sp13_S_contig11173.1032.1 vs. uniprot
Match: A0A8J2S7U1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S7U1_9STRA) HSP 1 Score: 239 bits (609), Expect = 1.200e-69 Identity = 128/176 (72.73%), Postives = 150/176 (85.23%), Query Frame = 1
Query: 1 EQLVNELGGAGAVAEMTGRKGRMVKKP-DGEVVYEKRNANGISMTMQNVFEKECFMSGQKLVAIISEAASAGISLQADRRAKNQKPRVHITMELPWSADKAVQQLGRSHRSNQSSAPSYKLLLSSVGGERRFASAVSSRLESLGALTQGDRRSA-GAHGLGLSAFNMDTKYGRLAL 522
+ L+ ELGG+ VAEMTGRKGRMV+ G+VVYE RN+NG+S+ MQN+ EK+ F G+K VAIISEAASAGISLQADRR NQ+ RVHIT+ELPWSADKA+QQLGR+HRSNQSSAP YK L+SSVGGE+RFASAV+ RLESLGALTQGDRR+ GA GLGL+AFN DTK+G+ AL
Sbjct: 720 DTLIAELGGSDCVAEMTGRKGRMVRDATSGKVVYEARNSNGVSLEMQNMHEKQAFNGGEKHVAIISEAASAGISLQADRRVANQRRRVHITLELPWSADKAIQQLGRTHRSNQSSAPEYKFLISSVGGEKRFASAVARRLESLGALTQGDRRATVGAKGLGLTAFNFDTKWGKNAL 895
BLAST of mRNA_Ecto-sp13_S_contig11173.1032.1 vs. uniprot
Match: A0A7S4A0M8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A0M8_9STRA) HSP 1 Score: 239 bits (609), Expect = 3.230e-69 Identity = 128/176 (72.73%), Postives = 150/176 (85.23%), Query Frame = 1
Query: 1 EQLVNELGGAGAVAEMTGRKGRMVKKP-DGEVVYEKRNANGISMTMQNVFEKECFMSGQKLVAIISEAASAGISLQADRRAKNQKPRVHITMELPWSADKAVQQLGRSHRSNQSSAPSYKLLLSSVGGERRFASAVSSRLESLGALTQGDRRSA-GAHGLGLSAFNMDTKYGRLAL 522
+ L+ ELGG+ VAEMTGRKGRMV+ G+VVYE RN+NG+S+ MQN+ EK+ F G+K VAIISEAASAGISLQADRR NQ+ RVHIT+ELPWSADKA+QQLGR+HRSNQSSAP YK L+SSVGGE+RFASAV+ RLESLGALTQGDRR+ GA GLGL+AFN DTK+G+ AL
Sbjct: 720 DTLIAELGGSDCVAEMTGRKGRMVRDATSGKVVYEARNSNGVSLEMQNMHEKQAFNGGEKHVAIISEAASAGISLQADRRVANQRRRVHITLELPWSADKAIQQLGRTHRSNQSSAPEYKFLISSVGGEKRFASAVARRLESLGALTQGDRRATVGAKGLGLTAFNFDTKWGKNAL 895
BLAST of mRNA_Ecto-sp13_S_contig11173.1032.1 vs. uniprot
Match: UPI000BA8308B (protein strawberry notch homolog 1-like n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI000BA8308B) HSP 1 Score: 218 bits (556), Expect = 1.340e-64 Identity = 119/198 (60.10%), Postives = 147/198 (74.24%), Query Frame = 1
Query: 1 EQLVNELGGAGAVAEMTGRKGRMVKKPDGEVVYEKRNANGISMTMQNVFEKECFMSGQKLVAIISEAASAGISLQADRRAKNQKPRVHITMELPWSADKAVQQLGRSHRSNQSSAPSYKLLLSSVGGERRFASAVSSRLESLGALTQGDRRSAGAHGLGLSAFNMDTKYGRLALEKVLLAAIRRIQPEVVFPALPEGE 594
+QL++ELGG VAEMTGRKGR+V DG + YE R+ + + N+ EK+ FM G+K +AIISEAAS+GISLQADRRAKNQ RVHIT+ELPWSAD+A+QQ GRSHRSNQ SAP Y L+S + GERRFAS V+ RLESLGALT GDRR+ + LS FN+DTKYGR ALE ++ A ++ P+V P EG+
Sbjct: 79 DQLIDELGGPENVAEMTGRKGRVVSNDDGSIQYESRSEIDVPVETLNITEKQRFMDGEKHIAIISEAASSGISLQADRRAKNQARRVHITLELPWSADRAIQQFGRSHRSNQVSAPEYLFLISDLAGERRFASIVAKRLESLGALTHGDRRATESR--DLSKFNIDTKYGRAALESMMRAIMQMEIPQVPPPEDYEGD 274
BLAST of mRNA_Ecto-sp13_S_contig11173.1032.1 vs. uniprot
Match: A0A2P2LR77_RHIMU (Helicase_C_4 domain-containing protein n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2LR77_RHIMU) HSP 1 Score: 216 bits (551), Expect = 1.520e-64 Identity = 117/206 (56.80%), Postives = 153/206 (74.27%), Query Frame = 1
Query: 7 LVNELGGAGAVAEMTGRKGRMVKKPDGE-VVYEKRNANGISMTMQNVFEKECFMSGQKLVAIISEAASAGISLQADRRAKNQKPRVHITMELPWSADKAVQQLGRSHRSNQSSAPSYKLLLSSVGGERRFASAVSSRLESLGALTQGDRRSAGAHGLGLSAFNMDTKYGRLALEKVLLAAIRRIQPEVVFPALPEGEATKVRNTVQ 621
++ +LGG VAEMTGR+G +V+ G+ V Y+ RN ++M M N+ EK+ FM G+KLVAIISEA SAG+SLQADRRAKNQK RVH+T+ELPWSAD+A+QQ GR+HRSNQ+SAP Y+LL +++GGERRFAS V+ RLESLGALTQGDRR+ G LSA+N D+ YG+ K L+ R I + P +P G +++ +TVQ
Sbjct: 7 MLIQLGGPDKVAEMTGRRGMLVRASSGKGVTYQARNTKDVTMEMVNMHEKQLFMEGKKLVAIISEAGSAGVSLQADRRAKNQKRRVHLTLELPWSADRAIQQFGRTHRSNQASAPEYRLLFTNLGGERRFASIVAKRLESLGALTQGDRRA----GPSLSAYNYDSAYGK----KALMVMYRGIMEQDTLPVVPPGCSSEKPDTVQ 204
BLAST of mRNA_Ecto-sp13_S_contig11173.1032.1 vs. uniprot
Match: A0A2G3BC98_CAPCH (Protein strawberry notch-like protein 1 n=1 Tax=Capsicum chinense TaxID=80379 RepID=A0A2G3BC98_CAPCH) HSP 1 Score: 212 bits (540), Expect = 1.620e-64 Identity = 116/203 (57.14%), Postives = 148/203 (72.91%), Query Frame = 1
Query: 16 ELGGAGAVAEMTGRKGRMVKKPDGE-VVYEKRNANGISMTMQNVFEKECFMSGQKLVAIISEAASAGISLQADRRAKNQKPRVHITMELPWSADKAVQQLGRSHRSNQSSAPSYKLLLSSVGGERRFASAVSSRLESLGALTQGDRRSAGAHGLGLSAFNMDTKYGRLALEKVLLAAIRRIQPEVVFPALPEGEATKVRNTVQ 621
ELGG VAE+TGRKG +V+ G+ V Y+ RN +SM M N+ EK+ FM G+KLVAIISEA SAG+SLQADRRA NQ+ RVH+T+ELPWSAD+A+QQ GR+HRSNQ+SAP YKLL +++GGERRFAS V+ RLESLGALTQGDRR+ G LSA+N D+ YG+ AL + R I + P +P G + + + +Q
Sbjct: 45 ELGGPENVAEITGRKGMLVRAASGKGVTYQARNTKDVSMEMVNIHEKQLFMEGKKLVAIISEAGSAGVSLQADRRALNQRRRVHVTLELPWSADRAIQQFGRTHRSNQASAPEYKLLFTNLGGERRFASVVAKRLESLGALTQGDRRA----GPSLSAYNYDSSYGKRAL----MMLYRGIMEQDPLPLVPPGCSADIPDAIQ 239
BLAST of mRNA_Ecto-sp13_S_contig11173.1032.1 vs. uniprot
Match: UPI00052813F4 (protein strawberry notch homolog 2-like n=1 Tax=Eurypyga helias TaxID=54383 RepID=UPI00052813F4) HSP 1 Score: 214 bits (544), Expect = 1.710e-64 Identity = 115/197 (58.38%), Postives = 144/197 (73.10%), Query Frame = 1
Query: 1 EQLVNELGGAGAVAEMTGRKGRMVKKPDGEVVYEKRNANGISMTMQNVFEKECFMSGQKLVAIISEAASAGISLQADRRAKNQKPRVHITMELPWSADKAVQQLGRSHRSNQSSAPSYKLLLSSVGGERRFASAVSSRLESLGALTQGDRRSAGAHGLGLSAFNMDTKYGRLALEKVLLAAIRRIQPEVVFPALPEG 591
++L+N GG VAEMTGRKGR+V +PDG VV+E R G+S+ N+ EKE FM G+KLVAIISEA+S+GISLQADRR KNQK RVH+T+ELPWSAD+A+QQ GR+HRSNQ SAP Y L+S + GERRFAS V+ RLESLGALT GDRR+ + LS +N + KYG AL++VL + + V P +G
Sbjct: 111 DELINHFGGPEHVAEMTGRKGRVVCRPDGSVVFESRAEQGLSIDHVNLKEKERFMKGEKLVAIISEASSSGISLQADRRVKNQKRRVHMTLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGERRFASIVAKRLESLGALTHGDRRATESR--DLSKYNFENKYGAKALDRVLSTILSYTENRVPVPKSYDG 305
BLAST of mRNA_Ecto-sp13_S_contig11173.1032.1 vs. uniprot
Match: D8QWV6_SELML (Helicase_C_4 domain-containing protein (Fragment) n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8QWV6_SELML) HSP 1 Score: 213 bits (542), Expect = 1.980e-64 Identity = 112/205 (54.63%), Postives = 152/205 (74.15%), Query Frame = 1
Query: 1 EQLVNELGGAGAVAEMTGRKGRMVKKPDGE-VVYEKRNANGISMTMQNVFEKECFMSGQKLVAIISEAASAGISLQADRRAKNQKPRVHITMELPWSADKAVQQLGRSHRSNQSSAPSYKLLLSSVGGERRFASAVSSRLESLGALTQGDRRSAGAHGLGLSAFNMDTKYGRLALEKVLLAAIRRIQPEVVFPALPEGEATKVRN 612
+ ++++LGG VAEMTGR+G +V+ +G+ VVY+ RN + + M N+ EK+ FM G+K +A+ISEAASAGISLQADRRA NQ+ RVH+T+ELPWSAD+A+QQ GR+HRSNQ+SAP Y+LL +++GGERRFAS V+ RLE+LGALTQGDRR+ G LSAFN D+ YG+ AL + + + ++ V+ P G VRN
Sbjct: 18 DDIIDQLGGPDCVAEMTGRRGMLVRASNGKGVVYQARNTKDVPIEMINMHEKQQFMDGKKHIAVISEAASAGISLQADRRAINQRRRVHVTLELPWSADRAIQQFGRTHRSNQASAPQYRLLFTNLGGERRFASVVAKRLETLGALTQGDRRA----GPSLSAFNYDSAYGKKALSMMYKSVMEQVDLPVLPPGCTSGNKEVVRN 218 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11173.1032.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig11173.1032.1 >prot_Ecto-sp13_S_contig11173.1032.1 ID=prot_Ecto-sp13_S_contig11173.1032.1|Name=mRNA_Ecto-sp13_S_contig11173.1032.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=209bp EQLVNELGGAGAVAEMTGRKGRMVKKPDGEVVYEKRNANGISMTMQNVFEback to top mRNA from alignment at Ecto-sp13_S_contig11173:1941..5283- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig11173.1032.1 ID=mRNA_Ecto-sp13_S_contig11173.1032.1|Name=mRNA_Ecto-sp13_S_contig11173.1032.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3343bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11173:1941..5283- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11173:1941..5283- >mRNA_Ecto-sp13_S_contig11173.1032.1 ID=mRNA_Ecto-sp13_S_contig11173.1032.1|Name=mRNA_Ecto-sp13_S_contig11173.1032.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=627bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11173:1941..5283- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |